Map Locations of contig_55659 (5509 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_55659

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68963 3 2926 bp AK375619 Available Available None
MLOC_68964 1 275 bp MLOC_68964.1 Available Available None





CDS Structure of MLOC_68963






CDS Structure of MLOC_68964






Contig Sequence (5509 bp)

>contig_55659 5509 assembly3_WGSMorex_rbca.fasta
TATATATATATGTATATATTTATATATATATATATATATATATATGTTGCATTTTCCATG
CATGGTAAGAGAAATATAATTAGTGTGATTGATGAGGTGGCATGTGTGGTGAGTTGGGAT
GTGTGCATTTTGAGAGAGAATATAAATGCCATTTCCCATGCATGTTAAGAGAAATAGTTA
GTGGGTTGATGAGGTGGTATGTGGAGTGAGGTGGCATGTGTGCATGTCGAGAGAATTGAG
ATAGTGGGGATCAATTATTTAGGTTTATAGGATTACAGGAATATGATTCTGTCTAATGAT
CACAATATGAATTTTCAAAGAAAGCAGTAGGAACGAACAAGATAAGGATATGCCCGCTAA
AAGTATGATATTGGTATAAGATGAATACAAACGAGTAGACATAGTAAGAACATAGTAGTT
AAATAACAAAAATGTTGACAGACTCGGGTTAACAAGATAAAAAGTCTTGTCAGCGTTATT
AAGCATTCTTATTTTTTTCTCATTGAGAATTATAACTGCATCATTTCTCCCTGACACAAG
TATTTTAGTTTGTGATCTGATTACGTCTACCTATTTGCATATAAGGTACAGTGCCATGAT
CCTGGAAGCTCTTGGCGAACTGAAAGAGCCAAATGGTTCAGAAGTTACTACAATTTGCAA
TTTTATAGAGGTTGAGCATCTTTTTGATTTCATTCTGCTGTAGTATTCTTTTGTCTCATT
TTTTGAGTTCATTCAAGTCTTGCTCAGATATACAACTAACATTGTACAAGTGAGAATTAT
AAGCATTCGGTTTTCACCCGGTTTTCCATTAATTAACTGGACAATTCTCTTCTTCTTAAT
TAATCGACGAGGCATATCTTTTGCCTCCCTTTCGAAAAAAAAAGAATTATAAGCATTTGC
TGTCGCTTGATTTGCTTGCAGGAGAATTTGGCGTTAAAGTATTCTGAAAATATTGTTGGT
AATAAGAGCTAATGTACTCCCCCGCAAAAAATAAAATAAAATAATAGCTAGTGTACTATG
TTGGGTGAACAGATTAGTCTAGCCGTTTTTCACATAGATATTGGTATATAACCTGATCTT
TGACATGGTGAAATAAATGTGAGCCCATGTTTCATGACCTGTTTTATTTATGATTTATGC
ATGATATTTTATGTATTGGTTAAGGTCCTCTACACCAAGGAAGCTCTGAAGATTGCCTTG
ATTGCTACAGGAATATTTTGTTTTTGTGGTCTGCATGTGTCCTGTTTTGTACCCCCTCTG
TTCCACAAATGTAAGACGTTTTTGCAAGCTGTTTTAGCTTGCAAAAACATCTTATATTGT
GGGACGGAGGGAGTACTTTGCAGTACTTATGTTTCATAATTATGTTGCATTGTTAGAATG
ATGGTAGGTTGCTGATGTTGTCTTTGTGCCATACATGCAGCAAAGGCATGAGGTGCAACC
AAATTTTAGAAGGTTGCTTTGTGCGAAATTACGAAGGCTTATAGGCGTGAACAAAGTTGA
GAAGGTGACAATATTTTCATTAGCAAAATGAAGATAATTTTATTAGGAAAATGAAACTAC
CAGAATTATGAAGGCTTACGGGTGCCAAAGTTCTTCTTCTGTTAGCTTGTTGGGGTCTGA
AGAAATTGGAGGGCACTCGCCTCGACTAGCCACTGTCAGGGCTCTCTTCCCTGCTTTGGT
AGAGAGGCTCCTAGGCCTATTTGAACTTCTAACTCTTCATTGCTTAATTGCAAACTGGGT
TCATGGTCTCTCTTTTATAGGGAAGACTGACTTGCCCCCTAAGAATATAACTCACCTTCC
TAACTCATTTCTTTCTCTTCCTAACTACTTGGTCGGCTGCTGCTGGTGCGACTGATATGT
GTCTCATGCTTGTTTGAATCCACTCCATTAGGCCACAACATCTCCAATCTTCCTTTTTGT
AAATTTGTTCTCTTTTGTGTATCTTGCTTACTATTTCTCCCTTTAAACTACGGCAGGACC
CTTGCCAAATCCACATGAATCTTAGTTCTCCGCATGGATTATGCTGGGACCCACATTCCT
TAGCAAATCCAAACCAGAGTATTCATGTCTACTGGGTAGAGTGTTGGTGGGAATACAGGG
GCGGTATAGGAAGTCTCACTGTGCCAACTTTGCAGCAGATGTTGTGATTTGCACCTCTTC
CAGTTTAAGCATTGTCGATATGCGGAATTCAGATTCTGTAGTTTGGCTGTCAAAATTGGC
ACACTTCATCTCAAGTTACAAGTTATCTTATGTGGAGCTCGGCATGAAATTCAAGTTTGT
ATTGCTATTTTAATTTCTTTAAATAGATTTTAATTCAGAAGAGAATTGAAGACGTGAAAA
GACCTCTAGATGCAATTAATGATAATCTTTTCTATCTTAATGTGAACAGATTGACAAGTC
CTATAAGCTGACGGATTCATATGCAAAAAGGGCTCTGGCTCCAATGAAAGATTCATCTCT
CAAGAAGAAGGATCCAGCCAAGTCATCCAAGGCAGCAAAGGGTCTAGCCCTGTTTGCGGC
CGCGAGCCCTGCACTGGACGCAGCTGAAGCTGCAGCGATGAAAGTAGCCGACGCGGAGGC
CAAATCTCACCTCGCAAACGAGCACATGATGGAGGTTGAAAGGATCGGCAAGATGGCCGA
GGAGACCGAGTCTCTCCTTGCGCTCGCCGAGGAGCTCTACCAGCGATGTATAGCATGTTG
ACCCTCCAGCAATTTTCACCTTCAACATCATCTTTACCATCATTATCTAACCCCTGGTGC
TTCAGGTTCAAGAGGAGAGGTGCTCACAATACTGCAGGTGGCGAAAAGGGAGATTTGATG
ATATTATCGGCCCCGTTAGCTGCGCGCCGGCATCTGCCCTATTGTACATGGATGGATAGG
TTGGCGCCGACATCTGCTCCTTTGTACATGGATGGACGGATAGGTTGGCCCAGCCTGTTG
TCTTCTTGCCCGCCTGTTGTCGCTGTGTTGTAGCATAACCTGAATCGATTCGTTGGTTGT
ACCTGATGGGCATTCATTTCGTTGCCTAGGATGATTTTAAACTTGCTGCATTCTGGATAC
TGTTCTGCGTTGAAATCATAATGTGCATGTCATCCTGCTGCCTTGGCCTGCAGGTTTGGT
CATATATACTCCTCCTTAACGTACAGCCTGGAAGTTTGCTTTTATTATTATGTTTGTTAT
TATTATTTGTGGGAAGTGAAGATTGCTTTTGGTGGATGCTTAACGTACAGCCTGTGACGC
CGCCTTCTTTGTACTACATGGCCGATGGATGGCCTTTGTCGAAAGCACCTAAAAGCAGAT
TCGCCAGTGTTTTTTTTGTCCTCTGCGATGCACTTTGCCCTGTCGGTCCATCTTATGAAA
CACTGATCTGGAGTTTGGACCCAGTTCCCAGTTTGTTGTGACCGGACAAGTTCAAACATC
TGTGTTACGGAGAGCGTCTCTCTCTCTCTTGTAAAATGATTATAAAATCAAATTTTAGAC
CATAGGACAGATTGCCATAACATAGTCGCAAAATGGGGTACACAGAAACTTGTTTGGGGT
TTTTCTTCTACAGTTGTAATTTTGTGTGATGTTATCTCTCCGTACGATCCAATAATCAAT
GGGGTTCCACTATGAAAAGATGACGGAACAAACATGAAACGGCGTCGTCAAGACAAGAAA
CTAAGGCCCAATTCTTTTTCCAGAATCTCAGGATTCTTCCACAATCTGACCCCTCCCTAG
TTTCTTTCAGAATCTTCGACCCCTATTTGTTTTACAATCCTAGCTAATTAGACCCTAACT
AGATAGGATTGTAAAATAAATGAGGCTCAAAGATTCTGAAAGAAGCTGGGGAAGGGTCAG
ATTCTGGAAGAATCCCCAGATTCTGACAAAAGAACCGGGCCTAAAGCATGGTTCACATGC
ACCGCTAGCATCGGAAAACTAAGAGCATCTAAAGCCGGATTTAGCAAATCTGAGCCCCTC
TACGCCTGCAGGCACGTTCAGGGTTCAGGGATAGCGTCCGTCGGTTCCTCATATGTTGCG
TCGCATATCCACATACCTCAAAGGAAATTTTTAAATCTACGCAATTCATGCACGCCGATC
AGTCGATATAAATTGTTTGAATTTAATAGTACGAAACAAAGCAAATCGAAGCATAGTTCA
ACAAATCGGACATGCCAAAATGAAATCAATATCCGAACGTGAAGGGATGCTTGTCGGATC
GCTGGCTGGACGCGCCCATCCATGCGTCCCGCTCGTCTAGCTTGCCGAGCTCCGCCCGCA
TCCGGGCCGTGTGCTCCACCTGCATCCTGGTCGCATGCTCTGCTGATGCAGTTACCGTCG
CCGCCTCCTGCGTCCTACGGTCATTGATCTCCTTCTTCTTCTCTGTAACCATTTCTTCGC
ATGCGCATCCAAGTGGGTTTCGTCCGCCAACATGAGCTTCGCATCCTCCACGTCCTGTGC
AAGTTGCAGCCTCTCCTTCTCGAACTCTATCTCTCCAAATGTCTTGGCCTTCTCGAGTTC
TCATTTTATCGCTGCCTCTTGCTTCTCCAACTCGATCTTCTCCCTCTTAATTTCAAGCTT
CCTCTCTACCCTCATCTGATCCTATTTCATCCTTTCCTTTTGCGCATCCAACATATGCTT
GTACCTATCCTCTTTCTTATTCTCCCTTGTCAAAAAAATGCCCGTCCATGTGGACGGCAT
TTTTGTAGCCGCCACGTCACGAGAGATCCTTGCCTTCTCCCACTTGTTTCCCATGACTTG
TCGGTTATCCTTTGGCACGGTAACTCTTCCATTGGTGACGACAACCTCGTCGTCCAATCC
AATGGATTGGTTGGAGCTTGAGCCATTATTCCTCGTCTTGCCGGCCTTGAGATCGGACAC
AACTCGTGTCCACTTTGTCTTGCCATTCAATAAGAGCCAACAATGGCTAAAAACAAATGG
CTTCTTCTCGACCTCGTGATACAAAGTGGACGCCACCGATGTCTAGCATACAACATACGT
ATGAGCACAAGAATAAAAGCACATGAAACATATTGAAATGACAATAAGATGAGGCAATTG
AGCTTACATGAGTTGCCACTCCCATCCCACTTTGAGGTCGTTTGGTCACTTATGAGTAGT
ACCCGATGTACTTGTTCACTTCTCCTAGAATGACCCCCCATCGATGTTGGAGAGATGCCA
CATCGCGGGTGGTCACGATAGGATGCGACTCCATATACTCCTTTCGTTCATGATAGTCCT
TCTAAATCTTCTCCCAATACGTGGTTCCCTTTTTCTCGGTGCCGCTTATTGGATCGAACG
ATTGTGCCCAACCAAGATTTGACCAACAAGATGTCCTCAAATCTTGTGAAAGTCAGACCT
CTTTCCTTAGCTGTCTTGCCCCCCTTCTTCTTCTTGCTCGGATTGGGACCGTATGTTGCC
CCAAGTACAAATGTGGTGGTCTCCTCCAATTCATAATCCATTTCGGCTGGATTTTCATTG
TCATTGATCATGCTTGTCAAGTACGCCTCTGATAACCCACAAGTGTAGG