morexGenes - Barley RNA-seq Database

Contig contig_55580
Source Contig contig_55580
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55580 (7218 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_55580

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68931	1	363 bp	MLOC_68931.1	Available	Available	LOC_Os04g11130.1, FRAME:+2, EVALUE:7e-17, 13104.m01008 protein DEF9 - Defensin and Defensin-like DEFL family, expressed
MLOC_68932	1	1776 bp	AK251853.1	Available	Available	None
CDS Structure of MLOC_68931

CDS Structure of MLOC_68932

Contig Sequence (7218 bp)

>contig_55580 7218 assembly3_WGSMorex_rbca.fasta
TAGGCCCTGTCCCCACTAGTGTATGCCACACTTACCAACAGATGGAACGTCGAAAGTCGG
TGTGTAGAGCAAAGCTCTTCATCAGGTAGTAATGCTGCAATTGATAACTCATATCCAAAC
CTTAATTTTTTTTGCAGAAGTGAACCCTGGATATGAAAAACCTTAAAACATTTTCTTTCT
TTCTTTCTACTACTTTCGATAACAAGTGCCGCCCTTTCTCTTTCCCTTTTGTTGTTTCAC
AGGACATGTCCATTGGCCTTCTGTTGTACCAGCAAGGCCTGGCATACTATCCTCCTTATG
CACGAATTCATGGGATGAGAGAATCTAAAGCATATACAAATTGAAAAATATGAGCAATAC
ATGGTACCAGGGAAGCTGTTGATACACAATGCATGGCATGTTCGTAATGGAGGATTCCAA
AAGAATTTTGGTATGTAGTAAGTTTATTTCCTAAAGAAAGAGGAAGGTTCTCACGTCACA
AATGAGACCTGAAGAAGCTGATAGTTGTATGATCTTAGTACAAAACGCAGACTGAACAAG
CCAAGTTCAGAAACATTGTAAATAAGAGCAGCAAAAAATATCCACATTCTAAATAACATG
CAGCATCCGGCTGGCCACTCTCTCCATAAAATAGAATGTAAGATTATTAGAAATTACAGC
CGAGGCATGGCCACTCTCTCCATTTTTCACATGTATTTTTTTTGTCAGCCTTCCTACTTT
TCACATGCCAGTTGCACTACCCTTAATTCACACACACACAAACAAAAAAGATGAGGCAAA
TCTTTTACTCCGCTTCTCAAGGAAAAAAAAATTGTACTGCCCTTGTTCTTTTGCGGGTAC
TCAGCTACACTACCCTACGAAAGCGGGTAGTCAGTTACATTACCCTACAAAAATCTGCTC
GCTTAGCCTGGAAGCAAGAAAGAAATATGTGTGTTACTGCAAGTATATAACAAGCCCCCC
TCCCTCCCTCCTCTACATTCATCTATCACATAATCCACCTTGAAGGTCTTAGTCTATCAT
ACAGCCCTTTTAGTCTCTCGCAAGAAACTAAATGGATCGGTCCACGAAGGTCTTTGTGGT
CGTCCTCCTGCTTCTTGTGGCCACAGGTACACATCCTACTACGTATTTGAGATAACTGAC
AATACTGCTACAGTTATGTACTATGTGAGATGGCTGATTTCCTCTTATCAATTTGCCCGT
GTAGAGTTCCAGGGAGCAGTGCAGGTGGCTTTTGCGAGGGATTGTAGGTCAGACAGCAAA
AAGTTTGTGGGGCTGTGCATGAGCGACACCAACTGTGCAAGTGTTTGCCTGACCGAGCGT
TTCACCGGAGGCAAGTGCGACGGCATTCTGAAGCATTGTGTCTGTACCAAGGACTGCTAG
TTGGCCCTGTTTTCTTCTTGCATACATGCTTCTGTGTAATAATATAACTGAATAATACTA
GACCTGCATCTTTATATATCTATATGTAATGTATCAGCAGGGCCACGGTTCAAGTTGAAT
AATCCAACACTCCAGAACTGGAGCTGCTACCGTTTTCAGGGTTGAAACGAATATAAGCTT
AAAAACTGGAACAAATGAGACATGAAACTTTACTAGAAGACTAGAAGGGAAGTCATATTT
CGTGAGAAAGAAAAGTGAAGCATGGAAGTAGACCTAGCACCACACCTCAGGATTTGATCT
AAGCCTTCTGTAGAGAGAAAAGCACCTATAGCTATATAATAGAAATTCAATGTATGAACT
TGCGACATATTGGGGGAAAAAATGAAACAACGCAAATGGCTGCATCCAGAAGATGAAACT
GGACAAGATAGGTCAGTCTGGGTTGAGACGCAGGCATATCAATCCTTGCTGTACACAGTA
ACATGGTTTGGCAGTTTGGCACTGAATAATCATCCATAATATCCACTAGGGGCGAATAAG
GTTGCATACAGTGCTAATGAACAAATAAAACATGTTATAAATAATACTAGGTCTAAACAG
ATTACAAGAATCATACTTGCAGGAGTAACTTTTCCAGAATTGCTGCTATTTTTACACAAG
TACTGCAGAGATAGAGATTTAAGAATCTAGTTCACTAATCTACACGTTTTAGACCAATTT
ATTGTGTTAAGCTACAGGACATCATATGAAACAGAAAGTAACGTTCCAGATCCACTGTCC
GGACTCACATACCTCAGTCACAGAACAAAATATGCCAGGATGGACGTCAGAATGGTGCCA
TTTTAACAGCTCAGTTCAATAATTTGGGTTAAATCTGTGGCTTCGTGAAATTAATTTTTA
AAACTATAGTCTTCCTCGAAAGTTTTGCTACCAGAATGTATACAATTTTCTGAACAGTTT
CACCATGTAGAGTCTGAAATAAGAAAGATGTGGCGTAGACATCCAAGCTGTAGCTTGCAG
TATGCAAGGCCTAAACAACCAGCATTTTATTTCTTCATGCCCCAACTACTGAACCAATAA
TGCTAGACCTACAAAGACTTACAAAGATTTACTTAACCTTCCAAACTAATTCTTTCTCCC
CCCTGATTTTCAGTGGGGGTGAGGCCCCTCATCCCTCTATTGCCAATTACAATCTTCCAC
ATCAGTTTGTATGTAAAATTTGTATGTAAACCTTTGTAGATGTAGCATTACTCCTACTGA
ACCAACGGCAGTTCTAACACTACTAAATTAAAGTACAGAGTGAAGAAATCATGGTGAATT
GATAGTTTTGTCTTATAAAGCTTTATGTTCGGCTTATCCTAAAGCCTATAGTCTGTCTAA
CTACATTTGAGATCTCTGATTTTCAGAACTGTTATTTTATAGTGGAGGCTCACACATATT
TTTGGCTTGGTATGTCCACAGCCAAGGAAAACTTATTCAAAAATAAATTTAGCGCGAGAA
GAGAGCAGCAAACTAATACAGATATAATATTGATCCAAAAACCTTCCTAAACAATTAACT
TTCGGAACAACAGAAATGAACATTGTACTGGAACTAAGTCAGCCAAACACATTACTTCAA
GTAGTGACATAAAAATATGTACAAAGGACCTGGTTATGAAGAACCTAAGAAACAAATCGA
TAAATCTACTTATGAAAATTTATTCAACACCTACCTAGAGATGGAAAGTCCGTGTGTAGA
GCAAAGCTCTTCATCAGGTAGTAATGCTGCAATTGATCACTCCTAGCAAAACCGTAAAAA
GATTTTAGGAGTGAACCGTGGATGTGACAAACCTTAGAGAACTTTTTTCTTGCTACTACT
TTCAAGTTTCGAGTTTCGAGTTTCGACAACAAGTGTCCCCTTTCTCTTTCCCTTTTGTTG
TTTGACACAAAAGCTCCATTGGCCTTTTGTTGTATCGGTAAGGCCTGGGACACTGTCCTC
CTTATGCACAAATTCATGTGGATGGGAGAAGATAAATCATATGCAAATTGAAATAATGAG
TAATACATACTAGAAGCTGTTGTACACAATACATGGCATGTTTGTAGTGCAGGATTCAAC
AAGAATTTAACAGTAGTAAGTTTATTTCCTAAAGGACAGGAAGATCATCACGTCCCAAAT
GAGACCTAAAGACACAGATAGTTGTCTGAACTTTGTACGAACCGCAGACTGAACAAGCCA
GGTTCAGAAACATTGTTATTAACATGACAGGTGAAGAACCAATTCATAGCTGTGCCATGC
TTTCTTTCTTCTCTACTGGATGACGAACAAACCATACTCGAATTCAGAAAATATTAGCAA
CTACCAAAAGTGCAAGTACCATACTATATAGTGGACACCAAACATCCAGTTAGAATGTCA
GAAAAACAACACAGAAACAGGACTTGCCAGCTTGCTGTGCAGACACCAGAGTGAAAACTT
CATTGTGAAAAAGCAGTTAAATACTATTCAAGCCCGTTCCTGGTTATTGCAATCTGAATC
TAGTGGGAACTTCCCCTTTGAGAATGGCAGCGTAGTCTTCAGCGAGGCGAGGCGCAGCTT
CCTTGTGAGGGTGTATGAACTTCTCCACGAATACCTTCTCGCTCACCTGGGCTGCGGTGT
AGAAGCTTCGGTGAGGCTTTAGCAACCCCTTTTCTTTAAGAAACTTCACAACGTAGTACC
GAGGTTTGAGCCGGGCCTCTAAGCTATATGTGAGCATTGCCGGCCTGTGAGCGATGTACT
CCGGCTCTAACCCGACCTCGGACATCAAGAATTCCGACATGCGCAGCAGCCTCTCCTGGG
AGTTCCTCAGCACCACCGGAAGCTTGGCGACAGCGATGGCCACCTCAGCTTCCGACCACC
TGAAAGTCTTCTTCAGGAACTCCACCTTGGCAGCAATCTTCTCCTCGCTGAGGAATGCGA
CGGCCAGCAGCGCGTGCCTGAACATCGCAGAGCCACGGGGCACACCGACATCCTCGGCAC
GCGCCACCATCGCCTGGATGCGCTCCGGCTTGCTGGTGAGCAGCCTCGGCACGGGCACGC
AGAGCTTGGCAATATCACAGTCACCTAGCCCGCACTCCCGGAGGAGCGCGACGTTGGGCT
TGACGACGTTCTCGAGGTCGGAGCTGAGGAGGTAGGAGTTGTACTTGAGCGCCTGGAGGA
GGTTCTCGAAGGAGCCGAAGAGGGGGACGTAGTACTGCAGCTTGGAGATGATGGTGGGGC
GGCGGAAGCGGGCGGGGTCGACCAGGACGAGGCGGGCGATCTGGGACGGGGAGAGCCCGA
GGTCCCGGAGCTCCGCGAGGCGCGGGGCCAGAGTCTTGTCGACCTCGGAGCAGAGGAGGA
GGGGGTCGTACACGACGACGGCGGCGACGTCGTCGTCGGAGAGGCCGAGGCCGGCGAGGA
AGGCGAGGACGGCTTCGGGCTTGGAGGGGGACTTGAGGCGGGAGAGGACCTTGGAGGCCT
TCACGGCCTGCGCCGGGGTGAGGTGGCAGGATGCTACGAGGTAGTCCTCCACGGCGAACG
GGGCAGGGCTAGCCGACGCTGCCACGGCGGCGGCGGCGGTGAATCGGGTGTTGGAGAAGG
GGCATCGGTGGCGGAACGCGAGTAGGGCACTCGTGGCGCGGGGACGGAGAGAGAGGAGGA
GGACGTGTTTCTGGAGAAGAAGCATGTCTGACGGCGGCGGCGGCGGCGGCGGCGGCGTGG
GGAGGGCGGCGCGCCGGCGAGAGTCAAAATATCACACAGGGAGAGCGAAGAGATAGGCTA
TCGTCGCGCGAAATGTTATCTTTCCGAAGGCCATCCCGTAAAATAACCGCCAATTTAGAA
ATAGGTCCTCTAAACAAAAATGATACACTTGCGGACTACCTACCGAATTGAGTTACGGAT
CCCTCCCATTTCCATTATGAGCCTGTTTGGGACTGCTCTGGTCCATAACATTTTTCAGGC
CGGGCCGGGTTTCGGGTCAGGCAAAAAAAAAATGATGCTAAAAACTTAGGTCCGAGCACG
GCCTGACCCGATCGTCGAGCCTGAATTTTGGGCTCAAGCCTGGCCCGAGATGAAAAAAGC
TCGACTGGACCCGACCGGCCTGGCCCGGGTGTGGCTTAATTTTATTTTTTGATAGGCCTG
AGTCCGGCCTGACGTGATCAACGGACTCAACTTTCACGTTCGAGCCTGAAAAAAGCCCGA
CTGGGCCCGATCAGTTGGGCCGGCAGGGCCGGCTATAACTCCCACTAGCCAATCCTTCCA
CCTGTGAATCCCAGCCTGAAAAAAGCCTGATCAGTTCGGACGGTCGCGCGCGCCCCGCGC
GCTTGGTTGGCTAAGCCATGCAACATTTTTCTCATCCAAATTTGGTATAACATGCGTTTA
AATTTGCTACAATTTATCCATTAGAAAAGTTGCATCCACGTTTGGTTGCAACCCGAGTTT
GTTGGATTTTTTCGCTACAACCAACGTTTGATTTTGCTACAACCGTTGTTGATTTTCGCT
ACAACCGGTATCATTTTTTTTCTACAACCGTTCACTAAAAAAGTTGCATACACGTTCATT
GGAGTTGCTATCCGAGTTCACCAGATTATTTTGCTACACCCCATATTTTGTTTTGCTACC
ACGCATCATCAGCGTCACTTTTTTGCTACGACCACGCTGATATTTTTTGGCTACAACCAT
ATTGTTGTTGTATTCGCGACGGAAATTTGCTACATCGCTGCTTATTTTTGCTATCATTGA
GGATTTTTGCTACATGGACAGATATGACGGTCAAACCACATCCAATCTGACGGATCGTAC
GGCCAACGTGCGGTCGGCCAAAAGTTTCAGCCGACGCGCCGGAGCAGAGCAGTCCCCTAA
CGAGTGACCGCACGCTTATTCGTTTGATCGAGCAGACTATTGTATTAGGAAAGGAGGCTT
TAAAAATACAACCGGTCTCACGTGTCCTTCCAAATAAAGCAACATCACGTTCTCCCCCCA
CCTAATCTATGCCCACGTGATTTATAAAATCTTGTCCCATGTGTATTAATGTGGGATTTC
AAAAAAAAATAAAAAAAATCATAACTTTTAATACGGGCGTCAGAATTGATAACCATTTTC
ACGGCTTCTCGCTACGAATTCTTCAAAATTAGATTTCATATGGGTAGGTTTCATCGAACT
TTTTTTTCAAGGGCATAATTGGATGCATTGGAGGCGACTTAGTACTATGGAGAAGCAACT
TCATCTTTTGGGCCTAGTAGGAATGTCTATTAGTTTGATTTGTATAGAAACAAGAAAATC
GAACAAAACATGAGGCGCCTTTAGTGCTAGATACAAGGAACTTCAATGCACTATATCTAC
GTGTCAATTTTGCTAATATTATCCCAACCTGTGTATCGTTGATGGTTAGTTGCGTACAAT
TGATGCTCACTTGCCTATAAATAGTATGAAATTGACTACCAATGATGTCCAGTTGCGTGG
CATTGGTAATAAGTTGCCTACCATTACTGTTCAGTTGCCTAACTTTGCAAATTAGTTGCT
TAAAATTGTGAAGTTGCTTCTCATTGTTTTCAAGTTACCTACAAACACTGCTTAGTTGGC
TACTAGTGATGCTTAGTTGCCTACCGGTGATGATATAGGCAACTTCACAATCATGGTAGA
CAACCCAAAGAAATGTGTTTTTTAATAAAATATGGATATACGGTAGTTGTATCATGTATG
CATAATTTTGTTGGAGAACGTTGCATGGGAAACAAAAAAATTCTACGCATACGAAGACCT
ATNNNNNNNNNNNNCATCTACGAGAGGAGATTTAGATCTAAGTACCCTTGTAGGTCACAC
AGCAGGAAGCGTTAAGAA