morexGenes - Barley RNA-seq Database

Contig contig_55572
Source Contig contig_55572
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55572 (7724 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_55572

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68920	1	1133 bp	MLOC_68920.1	Available	Available	None
MLOC_68919	2	1978 bp	MLOC_68919.1	Available	Available	LOC_Os05g04470.1, FRAME:+2, EVALUE:6e-166, 13105.m00450 protein peroxidase precursor, putative, expressed
CDS Structure of MLOC_68920

CDS Structure of MLOC_68919

Contig Sequence (7724 bp)

>contig_55572 7724 assembly3_WGSMorex_rbca.fasta
TAGCCTAAGATCCACCGGATCTATCAGTAAGTACAAAAAAATTACATCTCTGTCTTGAGA
TGTAAATTAGATCTTCACCTATAAAAGATGTAAAGTTGATGGTCGTGTGTCAACCGTCCA
ACTGCCTTCATTTCACTTTTGCCCGTCTGTATTCGCCGTCGGTCATATTTGCTCGAAAAC
GCTGCCGCCACCTTCCACCCGTCCATCCCTAATCCCGCCGTCCATCCTCATCACCAGCCA
CCGTCGATTTGAGTCTGCCACATCAACGACCGCCCGCCTCTGACATTGGCGATTTGTGCC
CCGAAATGCCTCCACCGCCGCTCGTCCGTCCATCCCCGACCCCGCCGCAACCCCATGGCC
TATCCCCCGCTAGCCGCGCTGCCCCAACGTTGTGACGGTCCATTCGGAGGTCGTACCGAT
GGGCGTAATGGTCGTAGCAGCTGACGATCGCCTTCCCTGGTGGTTGCTGCCCGTCACCGA
AGCTAGTTGAACGGCCGCACGACCACCGCAACCTGTCGAGCCGGTGGTTTCTCGGTCGTT
GCCGTCGTGGTTGCTTCACCTCGAGCCAATGTTTTTTTTTTAATTTACATCATCTATTAG
AGATGCTCTAAATAAATATCGTAATCCCGTCACGCACCGGCTCGTTGCAGCGCAGAGACG
GCACCCGGAGAGGGACAACACGGATCCGGGTGTGCATGAGTGCGCGCGGACACCGCAGGC
TCCATGTTAACCGCAACCACTTCCGGATTCCAAATCCTTGCCGTCGCCCACCCATCTTCG
CCATCGCCCAAGGAGAAGACAACATCGGCTAGCTTAGCTGCAGGGCACGAAGCCTAACCG
GCGGTCGATCGCGGGTCAACTTCGGCTCGGTCCCATGTTCCTACAGTCTCCCTCAGCTCA
GTCGGTCGAGGGACACACTGGCCACGTTCCAAGCTGATTAATCAGTGCCATGCAGCGGGT
CGCTCACTAGCTTCCATTTTCTATCCATCTCGAATCTAGTTAGTTGGGGTCGCATCCAGC
CACGTATAAATGCCACTGCACTTGCTAAAGCTGGTACACTCACCCATCTCCCCTCCCTGT
ACATACCAAGAGCGCGCGGCAGCGCGAACTTCGAGCTAGCTTAGCTTAGCTAGCACCAGT
GGACGACTATAGTACATAGTACCCAGTGTAGCGCGCGGTACAGGGGAGATGACCACTGGC
AATGGCGGATCTGTCCTGGCGGTGGTCGTCGTCGCCTGCTTGATCTTCGCCGTCCCTGGC
GCCGACGCGCAGCTCAAGGTTGGGTACTACGACGCGACGTGCCCCGACGCCGAGAGCCTC
ATCACCACCATCGTCCACGCCTCCGTCCGCATGGACGCCGGCAACGGCCCCGGCCTCATC
CGCCTCTTCTTCCACGACTGCTTCGTCAGGGTACGTGCCGCGCTCGATCGGCCCAGCTCG
TGCCGTCGTGCGTGCTTGATTATACGCCGCTAATGGAGCTGCATTCGCTATTCAGGGCTG
CGACGCGTCGGTGCTGCTGGACGACCCGACGGGCACGCCGGGAAACCAGACGGTGGAGAA
GACGGCGCCGCCCAACTTCCCCAGCCTCCGGGGCTTCGGGGTCATCGACCGCGCCAAGCG
CGTCGTGGAGCGCCGCTGCCCGGGGGTCGTCTCCTGCGCCGACATCGTCGCCTTCGCGGC
CCGCGACGCGTCCCGCATCATGGGGGGCATAGTCTTCGCCATGCCCTCCGGCCGCCTCGA
CGGCCGCGTCTCCAACGCCACCGAGGCGGTCGCCAACCTGCCGCCCGCCAACTTCAACCT
CACCCAGCTCATCACCCGCTTCGCGTCCAAGAACCTCACCGCCGACGAGATGGTCACGCT
CTCCGGCGCGCACTCCATCGGCCGCTCCCACTGCTCCTCCTTCTCCAGCCGCCTCTACCC
GCAGATCGACCCCACGCTCAACAACACGCTCGCCAAGGCCCTCCGCGCCGGCAAGTGCCC
GGCGGCGACGGGGCGGCTCGACCGCGTCGTGCAGCTGGACGCCAAGACGCCGCTCATGCT
CGACAACCAGTACTACAAGAACATTGGCACCAACGAGGTGCTCTTCAACTCCGACCAGGC
GCTCGTCGACAGGAGCGACACGGCGGCGCTCGTCGGCCAGTACGCCGCCAACCGGAAGCT
CTGGTCGCAGAAGTTCGCGGACGCCATGGTGAAGATGGGCTACGCCGACGTGCTCACCGG
GCCGCCCGGGGAGATCAGGAAGGTCTGCAGCAGAGTGAACTAGCACTACTGCCGAACCTC
CCAAATTCAGACATCTGCACATGTGTACTCCGGCCACTGTACATGACATGATCACCATTC
AACACATACATCTCACCTAGGTCACCCCGACGCGCCACCTGCATCGATCGTTCATGGCTG
TAAACCTGTGACATAGTACAAGGGTAGATCAGGTGTCACAATCTTGCAAATTCCATTGAT
TCGTTTTGTGGGGCTACTTTGGGTGCCTAGCTAAAGTCTGTCATGCATGCGCACCCTGAC
AGGTACAGTACAACAGGTACAACAACATAGAGATCAACCGTGTCATGGAGTTATTTTTTC
GCTTCAGCATTATTTTGTCACTCATGAGATTGGAATTGTGCACTCGCATACATTAAGATG
TGTTCCTTTCGTACAGCTTAAGAACTGAGCATACCGAATAATGCCAACGACTAGCACTTG
ATAATCTTCAAAGAGGCTTTCGCCTAGCTTTATACATAAAGCCTGAGTACTGGATATGCA
TATCCCTTCTTCATGACATGGACGCAGCTCATATACCAATCTGACAATAAGATTTCCACG
AGATGAGGCCAAATACCTTTTATCTTGTCCACACACATACATAGAAAGGGCAGCTTTTGT
GTAGCACAATATTATGATCCTAAAATTAGACTGTAGGAAAACGCATGCACGCAACCTGGA
GCGCACGTCTAAAAACAGAACAAACCGAACATACAGGACGACAGGAGCACTGGCTCAAAG
TCTGAAACTGCAGAGGAAGAGCCGGGAGAAGAAAACAGAGCATGAGGCATGGCAGACCAC
GGTACCGGACGCAGCGAACCACATGAACATGGTACCTGCTGCATATGCGCCCCTGTATTG
GCAGCGATCCAACGCGCGTGTGTGGCATGTTTCTGCTCCCGTGTCCGGGTGTCTCTCTCC
GCCCCGACCCTTCCTTCCTTTACACATCGAGCCTAGGCCAGGAACGAACATGCGCGCATG
TGCAGCGGCATGCAGTTTCGCCTAATTGGACTCTGCAATTTTATTAACATCGGAGATCCA
TGCATCCACCCCCTGCTTAACCTTGACATTTCTGCCTCCATTAAGACGCGCAATGCGGGT
AGGTCGTGGAGGGTTCGATCATCAGTATAAGAAAGTTCACTTCCGCAGTGAAGATATTGC
TAGGGATTGGCGCCCGATCGAGAGACGGAGATACCCCATGGCAGCGATTGACCACGTTAA
AGCCGGCCAACTTGGAGCTTGCACGGATATAAAACGGGTGCTGGCATCTTTTCGCCAAGT
TGAAGGATCGACCTCAATCAGACCGCTGCACCGGCGCACCGCACATGTTTTCTCTACCCT
CCTCTTCGCCATGTTCGTGTTGGTAGGAGGAACATGATCTTAAATACATATACAAATGGG
GCACATTTCCTGGCAGAAAAGAGAACAGGGGCTGCGAAGGTTCTTCTCCCAGCTCTGCCC
TGACGGATCCATGATGGGCAAGAAAGAAAGTAAGGAATCTCGGAAGCAAGTTGTCAGACC
AGCAGTGCTCCATATTTTGGATTTAGTGTGCTTCGGCGAGCTTCCTCCGCCGATCAGTGA
TCAGCGCATGCGCTTGCACTTCCGCCGCCTGATTGAGCAATAATGTAAGCAGCGCCCGCT
TTGGATCCTTGCGGCCCGACACAGCAGCACGCCACGTTTGGACTGATTGCCTGCGCCGGT
GATCGCACATGCGTATAAGTGCATTTATGTGTCTCTCTGACTGTACTTTAGCTCGGGCCT
TCTTCTTCGTCCTGAATAATCTTGGTGCCGCATCTTCTTCCTCACAGCTGTGCCTTGTCG
TTCCGGGAAAGGGCGTACGTGTTCATGTGTTCTCGCTCGCTCTCCTCCATGGAGTAAACC
ATTGTTGTTCGGTTGGATAATAATGGAGGGCGTGATGGTTGGGGTGGTGTATGTCGGTCG
TCTTTGGGGCAGGGCCACGGGCTTCACCGAATTTCCACACGAGTTTTAGAAACATCCGTG
GTTTATATCAACTTCGTGGTTTTTTCCCTTTCAAGTAAAAAAACCTGGTGTCCGTGAATT
TGAGCCCGCCTCATACGGTAATTTGTTTCGTGAAAATTCAATTGAAATTTGTCCATTTTG
TTTGCTCTACATTTGCCCAGTAAGGGCATCTTCAACCGTCTGTATATATCCAGCCCATGG
AGGCATTCCAATGCAAGTGTGTATCAGTCCGTCAAGTGATCCGGACGTGCATTTTTTCGC
AAATCGGATATAAATCGGACGTGCCTGGACCGCTGTTGCGCACGCTTCTCACCATCATGG
CTCACCAGATAACTCTTTCCTCGCCCGCGGGCTTCCCGTCCAAAACGTTCAACGTCACTC
CAGGACGCGAGTATCTGCATTCATCCCTGATGCCGTCCGTTCCTCTGTTGCTCACATTAA
TGACACACACTTACCGAGAAACCTACTCCGGCGTCTCCCATCCATCCGCATATCGTACAC
CATTGCCATTCGCCTCACCATATATACTCCAGCCCCTACCATAGTCGGCACTCATCCTCC
TCCGGTTCCTTTCTCTTCTTTGTACCATTCACATGGTCTCCTCGCGCTCCAAAACTCTCT
AGAACGGGCTCACGCGAGAGCAAGAAAGGAGATGGCCGCCATTGCTGTCCGCAGAGAGCC
GGAGGCCGACGACGTCCTAATGGAGGATGCGATCGATGACGAGCCGGTGCCACCCTCCTC
GTCATAGGCACCACGCTCGCTGGCGTATTGCACGATGACCATCAACGAGGCCCGTGCCCA
TTACATGGACATGATGCAGGATGAGCGGGAGGTGCAAGCCGACATAGCCTACAACTTCCA
GCTCCTCTAGGAGCACTCGCACGCATAGGAGTAGCTCGACGATGGCAGGGCGATCATGCC
GAACAATGACGTGGAGGATACGCCGACACTGCTCGAGTCCTACCGCTTCGCCCGTCAGAT
CCACATGGACCACTGGCGGTAACACCAGTGTGAGGCGAACTAGAGGCCGCCTACAAGGAG
TTTGATGAGGCGGGGGATGAGGTGTGGCCGTGTGGCGCAAGAGCGACTGCCAGGAGGACA
TCACCGACTTTGCCAAGCTCGCTCCCCCCATGACCACGAAGAGTAGTGCATGGTAGGTTG
CCGACACTCAGATCCCAAGAATGCCACTGTTCTTCCCCTCGGCCTGAGGCCAAGTTTGGC
GGGCTGATAAACGTAGGCCGATTAGTTGCTCAAGCTGCTGCGGCAGGGGTTGCTAGGAAT
GAGCTGGAGAAGGTAAAGAAAACTGTCGGAGCTTCTGTTCTCGGGGCTCATGGCGGTCCG
ATGTGGAACAGGCGCCAACGACCATTTAAGTTAGGAATTATACCTCGTGAGTCGGACGAG
TTCCGCTTTTAGTTGAAGTATCTCTGAAATGTAATGAATTTCGTCATACATATGTGAAAT
ACGTCGTGTTTGCATGAATCCCTTATGGTTGATTTGAAAATCCGCCATGTTTGCAACAAT
TTTGTCCGGTTTGTTAAATTTGTTGTTGAAATGTATGTGTTATTGCAATAATTTTCCTCC
TTATGTTCTAGAGATTGTTGACATAAACGATGAGGGATTTATGTGTTTGCTAGTGGACAC
AGAGTAACAGGTCCCCAAAGTCATGATGAGTTTGGTCCAAACTCAGAAGATAATCTCCTG
TGGTGCAGCGGGGATTATCATGGAAGATTATGCTAATAAAAGTGACCCCCAAAAAATTGT
CGACGCTAAGAAATTGATTCATTGCTCGTCCGAAGGTTATGACTGCAGCCGAGAAGTTGA
AGACGAAGAGAAGACGTAGTATTCGCTTTGTTGTTCTCCTTCTCTTTCATTGAATCATAG
GACCACCGTACTATTAGGAGGGTATAGTGTTTGAAACTTTGGTCCTCTCATGCTAAACCC
AATCCTATGAAAGTTGTGAGAGAAAGCTCTTTGTGCTCCGAGCAAATACTTGCGAGCAAG
TGACTGTGCTCTTCTTCACTGCGAGAGATTTGTCTGATTTTCTCTGACCAGGAGTTAGCA
TTACTTGTCCCCCAAGTAATGTTAATGTTGCTCCCAAAATAGGACTGTTGAAAAAGTGTC
GGTTGGCCATTGGCTAGATTGCATGTCTAAAATGGTCATTTCTCACCAGGGAAGATTGTC
GCTATAAATACCTATCCTGCACCATCTTTGTTTGTGACTCCTCCGTGTGACTGAGAGTTT
TGTGAGAAACCCCCTCTCCTAAGTGATTTGAGTTTAAAATCCATCGAGATAAAAACCTAG
AGCCAAAAAAATTAGATAGTGGTTTAGCATTACTCGAATCTAAGTCCAGTACGCTCCACC
TATTACTCTTGATAGCTACCAACTCTCTAGATGGTTACGTGTCTAAATCTTCAGAGACCA
AGCTTCAACACCGTATTGAGCCTTGGCGGGGCCGATGTCTTTTTAAGGCTGCCCGGCCGG
TCCTCATTAACTCATCTGTGTCCACCTTGCTCCTATTCTTGATGAGGTTCTATAGCCTTC
TGGAGGCACTTCATGAGGATATTGACACGGTTCAAGCGCGGTTCTTCTCGGCTGGCGAGG
GTGATAAGAAGAAGTACCACATGGTTCGTTGGACCGAAGTCTGCAAACCTCGTGAGCAGG
GTAGGCTTGGGATCATGTCCTCCAAACATATGAATATCGCTCTGCTCACCCGCTCGCTTT
GGAGGATTGCCATTGGGGAGGGTGGTCTCTGGCTGCGTATTATTAAGAATAATTACTTGC
ATGGCCAGCCCCTCGCCTTCTGCCAGCGGTCCGGTGGATCTCAGGTCTGGCAATCCTTCA
TCCAGCTTCTCCTGATCCTTCGCATCGAGACCTCTATCGTGGTTGGTTCTGGCGCGTCCA
CCCTGTTCTGGTTTGGTCGGTGGGCTGGCGAGACTCCCTTTGATGTGCATTTCCCGGACC
TGTTCACCATCACGGTCGAGCCTAGGATCTCGGTCGAGGTGGCCCTTATTGACTTAGGGC
TCCTCATGTTCCAGCAGCCATTAGGGCCTATGGACGTGATCGCCTGGCAGGACCCCCTAG
ATTGCATCACCTTACATGAGCCGGATGTGGAGCAGTCGATTGATTGTCTCTCGTGGCGCT
TGATAATCCCCAAGTGCAAGGAATCATCGTAGCAATTTCCAAAGGTGGAAGTGATAAGTA
TGGAGTGTCGAACCCACAAGAAGCTAAAGGTAAGATCAATATTCTCGCAAGTCCTATCTG
CCAGTGATTCTACTCTACGTACGCCGAACGTTTGCTTCCAACTAGAAATGAGAAATAAAA
CTGCGTTGTGGGTATGTAGGGAATAACTTGGCATTATAACGGGGAACTAGAATATAAAAA
TAGGTGTTGTTATCATAAAGTTAGAATATATTACAATATATTACAAACAACGAGTGTGGA
ATAATGATGGGTCGGTGTGCAGAATTTTCCTAGGCAATTGTTAA