morexGenes - Barley RNA-seq Database

Contig contig_55570
Source Contig contig_55570
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55570 (8849 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_55570

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68917	3	1593 bp	AK367813	Not available	Available	None
MLOC_68916	1	232 bp	None	Available	Available	None
MLOC_68915	3	2251 bp	MLOC_68915.2	Available	Available	LOC_Os01g54020.1, FRAME:+1, EVALUE:0.0, 13101.m05670 protein tRNA synthetase, putative, expressed
CDS Structure of MLOC_68917

CDS Structure of MLOC_68916

CDS Structure of MLOC_68915

Contig Sequence (8849 bp)

>contig_55570 8849 assembly3_WGSMorex_rbca.fasta
CTAGGGCATATTTCCAACACATACTCTATCACTTATGTACTTGAAAGTTCCTTTCTTTGA
GTGCCCGACATATGTTAGTATACCCAAGTATCGATCGCTCAGAGATTCATTGGGAACATG
CAAGAATCTCTTGACCGCATTTCTCACAATTTCTGGACAACCCTTACTAGAGAAGATTGA
GGACTTTTCTCTATTAATTCTTTGCCCCGAGGCCATGCAATAAGAATCTGACATGTTTGA
AACCTCCTCCGCTCCATTGACACTTGCCCTAAAAAACAATGGGCTGTCGTTCGCGAATAA
AGATGGTTCACCGTCGGGGACGTTGGTGCCACCTTAATGCCGTTGAGCTGGGACGACTAG
TTCTGGGATTTTAAAAGGCCTGAGAGGCCCTCTGCTGCTAATAGAAATAGGTATGAAGAG
ATAGGATATCCCTGCCGAATACCCCGTGTTGGTTTAAACTCTTCTCACTTGTTGCCATTG
AACATCACTAAGAAAGAGACCGAGCTTACCATGTTCATAACTACTGCCACTCATGATGCT
GCAAAACCCAACTTGTCCATGATTGACTTTAGATAGGACCATTCCACCCGGTCGTATGCT
TTCGTCATGTTAAGTTTCAATGCAGTGAAACTGTTGTTCTTGGCTCTGCTGCGCTCTCCT
CCCTGTAAAAACATAGTTTTAAATAGCCCGCTATAGCTCCGATATAGCTGATTTAGAGGC
CCACCGCTATTTACCATAGCCCGTTATTTAAAACATGGCGGCTGCTACGGATCAACTGGC
TGATCTTAGGGAAAGATCAGCCACCTGCCTAGCCGTATGATTAGGTGCATTAATGCCATT
CGATCTGACCAAATGTAGTTGTCTACTTCCCCCTTTCTCCCGTATCCACCACGCTGAAAA
AATAGGTGATTGCATCATCCCGACCCCGACCCGACGGCGCAACGAAGCTCCATTGCAACC
CCGACCCAACGGCGCAGCGAAGCTCCATTGTAACATCGGCGATGAGACTCAACGGCGCCG
ACGAAGCTCCATTGCAATCCCCGACGGTGAGACAAAGCTGCAACGCAGCACCCACGACGC
AGGTAAAGCTCCACTTCAACCCCCGACGGCTAGACAAAAGCTGCAACGCAGCACCGACGA
CGCCGACGAAGCTCCATTGTAGCACCAACGGGGCTCTATGCAGCACCGGCAAAGCTCCAT
TGCAGCCTAACGACTCCGACGAGTGCCGACGAGGCTCCATTGCAGCTCCAGCGATGCTTT
AATGCAACTGTGACGGCTTCAGTGCAGCTATGATGGCACTCCATTGCAGCGTCGGCGACG
CTTCAGTGCAATTCCGACGACGCTCCATTACCGCCCCCAACGGCGCTCCATTACAACTCC
ATCGGCACGAAGAAAGCTCCGACACAGCACCGGTCGCCTCCTCCTCTCGTGTGGTGCGCT
CCATCACCGGCGACGAGCAGCCCCACTTGAGCAGCAGCAGGGGCAGGCCATGGCGGACGA
CGCTTGGACGGAAGGACCTTGAGCAGTAGCAAGTGAAGCTTGGCCATGCCATGGCGAACG
GGATTTGAATGGGAGGACCTTGAGCACGAGCAGACGGAGCTTGGAGGCTGGTCATGATGG
AGAGGAAAAAGAACGAGGAGAATGAGCGGAGGAGAGGACGGGTGAAGGAGATAAGGTTGA
AGCCGAAAGCGATGGATTCGCTCGCACGCACGGGCACGTGTCGCATGGGTGACCTGACTT
ACGAGGTGACCAAATCAGTTGGTAGATTTAAAACATTGGTAAAAACACATGTCCTTCCCA
GCCCGGCCCGGCCCGGCCCGGCCGGCTCTGTCCCCATCTGAAAACCCAACCCGACCCGTC
AGCCTGCCTGCGGCTCGCTCTCCTTCCTTCCTTCCTTCCTTCGTCCATCCGGAGTCGCGC
AGCCAAATCCGGAGCAGAGCAGAGCACCGGGAGCCAACGCCATGAGCCGCGCGCTCCTCT
CCCACATCCTCCACCGCCCGCCTCTCCTCGCGTACGGCCACTCTCCTTCTCACTCTCCAC
CGCCCTGACGCTGCTACATTTTTTTTAATCTCTTCCGCCGTTCGGGCTTCGCGCGCAGGT
CGAGGAGTGGCGTCCGAGGAGGAGCGCTGCCTTCCCGCCTCCGCGCTCTCCGCCTCAACT
GCAGCGGGGCTGAAGCTGCCGCCCCAGCCGATGAGGCGCCTGCTCCCCCGGCGAGGAAGT
AAGCCCCGCGCCTCTGCCCTCGCTCCTGTGCTGTTCGACGTAATGCGTCACGGCTAGGCT
CTGCTCCTCCTGTGCTGTTCGTGTAGTTTCGTGCGGCGTGATTGCCTGCATTCGATCGGG
GGTGAATGCAATGCCTGAACGCTCAGGCTTAAGAGTTAAGACTAGTGTGCTTCAGTTGTG
CACCGCGGGCGTATGATGCAATGCTACATTAGGATAAAACCAATGCATGCCGTTCGACAT
CTGTTATCATGTCGTGGAGGTCTTGGGGGGTTGGGATATGCCGACGCATGAGCTATTGAG
TATCTGTTGCCGACTGCAATTTACTTCATGCAAACCTTAATTTCTATGGAGCACGCTGGC
CATACCATTTAGTCTTCACTTCTTTTATTATCCCACCATACTCATTCTCCCAGTGGTGAT
TTGGTTTTCTCTGCTTAAAAAGCATGCATAATGCAACCTTAAGTAGAACAGAAAAATCAA
ACATGTTTAATGAGACAATGCAAACTTTTCACTCCAAGCCGCGCTGCAAGATCATATATG
CTCGTTCCCTACTAAGAGATCTCTTGTAAGTTCTGCACAAAAAGCAATTCTTTGGCCTTT
TTGATGTTTGTATATATACAACTTTCAACTATTGGGTTCTCATACCAATATATAGATCTC
ACCGCAACTTCTGTACAGCAATAAAATGTTGATATTATTCTAAATATCTTGATGTTAAAT
TGGTCCATGTTTATAGTATTTGTATAGCAAGGTTGTGTGTAGTCCTGATAAACCCGTTTT
ACTTGTTCCTTCATTTGTAATTTGAACAATAATCTATGTGTCTACCCAATGCAGGAAAAG
AGTAGTTTCTGGTGTACAGCCAACAGGAATGGTGCACCTTGGAAATTATCTTGGTGCTAT
TAAGAACTGGGTTGCACTTCAGGTGCTGCATACTTTAAACTTGTAACTAAATTGCTTTAT
CAAACTGCAGTGGAAGTGCTTTGGCTTTACTGTTAGTATCTGAAAAGGAAAACTTTCAAA
GCAATGAAGCCACGAAATATTAATCAAACATTCTCGCGAGGCTGGTTCAGTTTTGGCATT
GTTCCATGTTCATCTAGTTGGGGGGTGTTCAAGAACTAGCAAGCTATATATCCGGTGCTA
AACAAATAATCCATTATATCTACATCTTAGTATCTTATTCTTTGATAATTCCTTGCAGGA
TTTGTATGAGACATTCTTTTTCATTGTGGACCTGCATGCGGTAAGCATCTCATGACCATC
AAGCGCAATAAGTTTCTATAGAGTGAAGTTCGTTGTGAAATGTGAATAGCTTATAAGGTA
GCTAGCTACCAGCATCCCCGTTGTAATTTATCCAGTGCTTCGGTCAAACTGGGATGCTTT
ACCTTGTATGGTTGGATACTCTTCTAAGACAAGCTACAACTGCAAGATCTTGTGTAATAC
CTGAGGTTCATCACAATATCTATTTGTCTAATCAACCATGTGAAGTACTCCCGTACAAGT
CTAAAAAGCACAATGTTTATGTTAACCAAGCAGTGTTAATGCTGTATATCTGAACTACAG
TGCTCCCTTACAAGAACACAAGCAGCGGCATAATGGTCATGTTCGACTATTTCATAATGA
TTTTTTTTGAAGATTTTTCTTCATGATTCATTTGGCTAGCTTAACACTTGATAATTTATG
TTTCCCACTATCTCCAAACATGTGCAGATTACCTTGCCGTATGATGCACCGGAGCTATCT
AAAGCTACAAGAAGCACCGCTGCAATTTATCTGGCATGCGGCATTGATAGTTCCAAGGTC
TGCTCCATATGCATATTTATGCTATGTTTTGGTTTTCCTGTTTTTGGATAGCTTTCTGTT
GCTGAAGATTTTATGGTACTTTTGTGTTTCCAGGCTTCTATTTTTGTACAGTCTCATGTC
CGTGCTCATATCGAGCTGATGTGGCTACTGAGCTCTTCGACTCCTATTGGTTGGCTGAAC
AAAATGATTCAGTTCAAAGAGAAGTCACGCAAGGCGGTGCGTCATTCGCTGTACGATAGC
TTCACTATTAATTTCTGTTTTAGCTGAACCCTCATAAATCATCATAGTACATAAGGGATT
TTGAAAGACGACTGCTCAGTTCACAAATGGACATGTCTCCTATGTTGGGGAGATTATTTG
ACAGTCAAGAAATAGCACCTTCTCAATTTAGGACTGGTGTGAATAACCTGCAGTTAAAAA
ACAGTTCCACCAATAATATGCATTGATATATGTTCCCTACTGATTTAGAATATCCTACTG
AGCAATGAGAGGAAGGGAAAACCAGAAATCCAATTCGGCTCTTGGGAACACTAAATTTAA
TACTCCTTTCAGTATACTGACACCCAAGTTTTTCTGTATTTTGTCAAAATTGTTAGTTCT
AGCATTAGCTTTTTACTCAAGCATTTGCTCCGTATTTTCTGTGATCAGATGAACCCAGGT
TTCGTTTTATGCATGTCAAATCAGTCCATCTGCAACTTCCATCGCGTTGTTAAATTTGTT
AGATTTCGTTAGGAATGTATTGATTGGTCGTGTCCTCTACCAGGGTAATGAAAATGTTGG
AGTGGCACTTTTGACGTACCCTGTTCTAATGGCTTCTGACATCCTTCTGTACCAGGTAAA
GTTTGTTTGTGGCTACCATTTTGTTATGTTAGTCTAGTGTAAAAGCTCGCATTAGCATAT
AATTCATCTTCAACCTTGTGCTTTTTACACTGCATTCCTTGCGTTGATCTCAACAATAGC
TGGTTTGAATGGTTGCAGTCCGATTTGGTACCTGTTGGTGAAGATCAGACACAACATTTG
GAATTAACTCGTGAAATTTCTGAACGTGTAAATAATCTATATGGTGGAAGAAAGTGGAAG
AAATTGGGAGGGTGAGAAAAGCTAAATTATCTCGTACATCTTTTGCGATGCCAGTAGCTG
TCTCTCAGTATGATACTGTCATGTCTTGTGTGTTTGCAGGAGAGGCGGTTCATTATTTAA
GGTGCGTGTAGTCATGCGTACACATGGTTTGCCATCATTCAAAGATTCAACACCTTGAGC
GAAGGATGTTTTGTACTTTTGCTTAAGGAATTTTCTGGGTTGTTTATTTAGGTTCCTGAA
GCCCTTATCCCTCCAGCAGGTGCCCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGGTA
CTTGTATCATTTCTTACCTGATCACGGACTAAAGTTAATACCTATGGTTACTATACTGAT
AGTTTTAATGTTGATCCATGATCATATACGTTTTATTTGCAGAGCTGATTTGATGCACAT
ATTGTACTTACCTCCTCAATGTGATGTATGTGTATGTCCATACTGTACTGATGTGATGTT
TATTGGTTGTAGATGTCGAAGTCTGCTCCTTCAGATCTATCTCGCATTAATCTTCTTGAC
CCAAAAGATGTAAGTGCAGTGTATGAATTCAATGTTCTGCTTTTGTGTTATTTTCTTCCA
TCAACTTACCGTGTTTATGTTTATAGGTTTATACATTTTTATTTGGTCTGATAGATCTCT
GACGCTTTGCAGGTGATTGTGAACAAAATCAAACGCTGCAAAACTGACTCGCTCCCAGGG
TCTGTAGCATCTATCCTTCCCTCTCTCACCGCAATTTGAATTAATATAGCCGTTGGTAAA
GAATTCATGTCATTCAACTTGTACACTCCAGCTTGGAATTCGACAACCCAGAGAGGCCGG
AATGCAGCAATCTTCTCTCAGTATATCAGATCATTACTGGGAAAACGAAAGAGGTAACTT
TTGCATGCCTGATTAATACACCTGCTCAGCCAGAACAGGAAATGCGTCTCCTCCTGCACA
TGGATGGTTTCATCCATGTCCAGCATCATGTTGTTGATTAAAAACGTATTTACCCATTTG
GCTTGGCAGGAAGTTGTTAGCGAATGCCAAGATATGAACTGGGGGACATTCAAGGCTACC
CTTACAGATGCCTTAATTGATCATCTGCAGCCTATTCAGGTGTGATAATCTCAGAATTCA
TGTGGTCTGCTCATGTTCACCCTATCCAAGTATACCTAATCCGAAACCTTTCTGTAGGTC
CGTTACGAGGAGATCATGTCTGATCCAGGCTATTTAGATACTGTTCTGCTAGATGGGGCA
GGGAAAGCTTCCGAGATAGCAGACGCCACACTCAACAATGTATACCAAGCCATGGGTTTC
TTGCGCAGATAGCATATGTTTCACCATGCAGACCATTTCACAAGAAGCACGGGTTCAACT
GTTTTATAACTGCACAATGCTGCCTTCTTGCACTTGTGTTGGCCTTTCTGCCAGTAGTAC
TGATAAGCCTTTTGTTCCTAGTTGGAACAAACAAAAATCAACAGTCTGTTAACGGATTAT
TTATTGAAATATAATGTCGAAATACCATCTCTGGGCAACTTTACAATTGTTTTCGCAAAG
TTACATCTGTGCATGGACTTCCTTTTATATATGAACTGGTGATGACATATTGACATTTGC
ACAAACTTGCGGTCGCTAGTTGAATCAACAGAGCAAAAAGCTTCATGTCAACCCTCCACT
TAGGACTAACGCGGCTTGGCTGATGACTCTAGCAATCCTGTGGATCTCATGCTGTACAGA
TTGCCAGGACTGGGAGGTGTTTGTTTTCTTTGCTGTCTGAATGGCATCATCAACACCTGG
ATACACTTCCGCTCCATAATCGTTGTATAGTGAAGGTCCATAAATCTGTGCGATTTCTTT
TCTGTAAGCACAACAGTATGTAATGAACCAGCAGCGTATTTTACCGAAACCATAACAGCT
TACCATGTGTTTGTACCATGGTCTCCCAGACAGTCCTTCCCGCTCCGTGAAGGCCCGCTC
AGTCATCATTAACCGGTCATTCAGATCTCTCATCCTCAACGGGTTGTTTCGCCGCAGGGA
CCAAAACTTCGATGTTTGCAGAGCCTAATTGCCAAGATGAACTTAGGAAGCTCGAAGTTA
AAACTATGACCCAACAACAACAGACACAATACCTGAAGCTCAGAATCCACTTTCAGCACC
GCTGTATTGAACTGTTTGATCGACTTGTGGAGGGGAGATAAGCTGACAGGCATTCCTAGT
ATTCTCTTGCTTATATCCACCGCGCCATTCTGCAAGAGAGAGAGAGAGAGCTGTCACGAT
CCTCCAAATTTAAACCCCTAATTACTGACAGAAGATGCTCAGTTCTGAAAAAGTTGGTAT
GGGAGAGCTCTGAAGGGCATGTTTTACCTCAAGCTCTGCGGCATAAGAGCTGTAGTTGAA
GGGCAGGATCTCCTCATCCGAAAGCCTCAAAGCAACAAGCCCCCATACACTTGCCACTAC
AAGAAGGAATGATTTTAGCTTGAGTTTCGATTATGCAAGCATTCTACAAATGCAGCAAAA
ATTTAAGGACAGTCCAGTGGTTTGATTGATGTAAGTATGTAAACACATCAATCAAACTAC
TGAACTGTCCTTCATATCTACTTTCGGCCGAGTTGATCATCCACAAGTCATATATACTTT
CTTAGTGGTCAAGTTGAGTTTTCCCTATAAACAGGACACCATGTACTATCAATTAAGCAA
TGAGAAGAACAAACTAGAAAAAATCTAATCCCAATCACTCACTTCTATGCCTCTCATCCT
CTGCACTACCTTTGCTCCTCGGAGCCATAACTCCAACCTTGTCACATTCATCGGTATTAG
GATCGCTACCAACTTTAGAGTCGTTGTTATAGGGTACCTGCGACATGCCTGCGGAACATG
GGATCTCCATACTTCTCCATCCATGTGAAGTCATCATACAGGCTATGGTACACAGCGTAT
CCTGCAAACAAGTAGCACTCTTATCCGATTTGATCTAGTAAAGGAAATCACAACCATTCA
AGAGCGCAAACGGCAAAACATTTCACAACCATTCAGGCAGATAGAAAACATAAAACAAAC
CTGTCCCAATAGCCATGTCGACTGAAGGAATGCCAATATGTTGAACAAAGGCAGAATAAT
CTGATCCTCCACCTCCTAACCTTCCAATCTTAATATATAAGCGTGTCATCAGAAATCTTA
AACTTGTATAGCAAAAGCATCGCACGCCTGAACTTAGAACAAGAGGAAATAGAACCATGT
CTAAACAATACATAATATTCCTTTTACATGCCAAGTGTGCAGAATACTGAGAGAACAATT
TGTGTGACAAGCTTTAGCTAACATTAAGTGCTTACCAGAGAACTATCAGAAGCCATCCAC
ATGTCATACAGACTTTCTGTTCCATTATCCGGATTTTGAACCTTCCTCAGAAAGAAAGGA
AACACAGTATATCAAGAGAAGTAAAGAACCCTCAACAGTAATTCACTCTTTGGTTTTTAA
TATAAATTCCTACTGAAAACAATTCCATTACAGTAAACTATTCCTTCTTTCAAATATAAC
GAAACAAGCCAAGCACAGGCTAGAGAGAAAGTAATTTACTGATTGTAAATTAGTTGCTAA
ACTGGAACCACTTTGGTTAGTCTGAAGGGAATATGTCCCATGATTTTCTAAGTTATTGAC
ATGTGGGATCCAGGTGCTATAAATGGAATTTTGCCACATGTGAGACTACGGACCAAATGG
ATGCCCTAGCATTGGTAGTGGTACTTCCG