morexGenes - Barley RNA-seq Database

Contig contig_55565
Source Contig contig_55565
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55565 (8682 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_55565

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68912	1	2192 bp	MLOC_68912.1	Available	Available	LOC_Os06g35630.1, FRAME:+2, EVALUE:0.0, 13106.m03679 protein reticuline oxidase-like protein precursor, putative, expressed
CDS Structure of MLOC_68912

Contig Sequence (8682 bp)

>contig_55565 8682 assembly3_WGSMorex_rbca.fasta
TAGCTCACGTCCGTTATGCGTAGGTCGTCCCCCTCTTATTTCTTGTACTCGTGAGTTTAG
CCATCAAATATATGCTTAGCCATTGCTGCAACCTCACCACTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTCTTGATACCTTTGGAAATGAGACAAGAGGCACAGACGAAGGTAAAAA
TGTGACTCTCGGGGAAAAAACACACAACAAAAAACGCATTTTTTTCATTCCCGAGAGGGA
CGGTCGTGCCTCCCGCGGAAGCAAAACCATGTCTCTCGCAAAAAAACATGTTCTTTTCAT
TTCCGAGAGGCACGGCCGTACATCTAACGAAAGTAAAACCACGTCACTCGAAAAAAAACA
AAAAAACGCTTATTTTTCGTTTCCGAGAAGTACAGCCGTGCCTCTCACGAAAACAAAACT
GTGCCTCTTGCAAAAAAGAAAATCAGAAAACACGTTTTTGTTCGTTTCGAGAGTCACGGA
TGTGCCTCTCGCGAAAGCAACACCGTGCCTTTTGCGATAAACGTGTTTTCTTTTACGAGA
GGCACGACTTTTTTCCCGTACAAAAGCTAACAAAGCCGGTGAAAAACCGAAACACCAAAA
AAACCAGAAAAAAACCCAATCCAAAAAGCCAAAAAAGCGTGCAAAAATATAAAAAAACGA
TATTCAGAGAAAACGTTCAGAACGTGGCACGTGGCGGCGGCTGAGAACACGCCAAATGAC
GGTACGTGGGATGGATCGCTGGGAGGCTCTCGAAGGAATGCTCGCTAACTTTTCTTTTAG
ACAAATAAATGATCGCTAACTGGTTGCTCTCAATAATAACTCCGAAAGTCCAGGCCCATG
TTTAACAAACCTAGGTATTATAAATCCTAAATTTATAATCAAGCCCATCCGTTAGATCTC
AAAATTGATCTAATACACAAACAAGATTAAAACTCCTTGAGATCAGAAATCTCTATGGTG
TCAAGGCGTGTCCGCTTCTAGTAAATTTATAAACTAGCTACATACAGTTCAATATACTAT
AGGCCTCATATTCTCATGCATATGGCAGAGTCTTCCAGAAATGATATTCTACCATGCATA
AAGTATGTGTTTTTCATTCTCTACATAATGTTTTGTTGGGCCTTTTTTTCTCGTTCCAAA
GTTTAATGTTCTGTTGTGTACCAACAAAAAAACGCACTTGTTTAAAAATAAATTTGCTGG
TATGCAATGAAACATTATGATACGCTTTGAAATAAGGAAAAAAATAACTACAAAACATCT
TATATTACAATAGTTTGAAACAACACAAAGTTTATCAAAAATAATAATAATTAGAAAACA
TGGGTGGCACGGATCTCACAATAGCGACGGAACACATCTCAGTGCAGAAAAAATCACTCT
CTTGATAGTTCCACTCCCTCGTTTTTCACATGCAAAGGAGGGAGCAGTAGTATATGAGGA
GCTCCTGATAAAAAATTGAAGCACAGCAGTATTGTTGCGAGAGGATCACCGACGTAGCAA
AAACATGGGTATGCTCAGAGGATTGGCACTCGCCTTTTCCGTGAGCTTCTTCTCATGCTA
CCTGGCGATGGTTTCCTCCGATGTTGCTTCCTCCGACAGCGATGGCGATGGTTTCCTCCA
ATGCCTAAGGGAGAAGATACCCAGAGAGCTGGTGTACACACAGAGCTCCAGCAACTTCAC
CGACGTGCTGGTCTCCTCCATCAAGAACCCCAGGTTCTTCACCAACGCCACGGCGAGGCC
GCTCTGCATCGTCACGCCGGGCGACGCCTCCCACGTCCAGGCCGCCGTGGTGTGCGGCCG
CATGCAGGGCGTGCGCCTCCGCGTGCGCAGCGGCGGGCACGACTACGAGGGCCTGTCGTA
CCGCTCGGCGCGGCCGTCCGAGGTGTTCGCGGTGGTCGACGTCGGCGCCAGCCTCCGGGC
CGTGCGCGTCAACCGTCTCGAGTCCACGGCCTGGGTCGACTCCGGCGCCACCATCGGGGA
GCTGTACTATGCCATAGCCAAGAACGACTCACTGGTCGCGTTCCCGGCTGGAGAGTGCAC
GACCGTCGGCGTAGGCGGCCACTTTAGCGGCGGGGGCATCGGCATGATGATGCGTAAGCA
TGGCCTCGCTGTCGACAGGATCGTCGACGCCAAGCTGGTCAACGCCGACGGGGACCTCCT
CGACAGGGCCGGCATGGGGGAGGACCTCTTCTGGGCCATCCGAGGCGGCGGCGGCGGGAG
CTTCGGCGTCGTGCTCTCTTGGAAGGTGCAGCTCGTGAACGTCCCGCCCACGGTGACGGT
GTTCAACATCGGGAAGACGGTCGACCAGGGCGCCGTGGACATCCTCACCAGATGGCAGGA
CGTCGCGCCGTCGCTCCCCAGCGACCTCACCATAAGGGTGATCGTGCAGCAGGGGCAGCA
GGCTCTGTTCCAGGGCCAGTACCTCGGCGCGTGCGGCGCGCTGGTGGAGACGATGGGCGA
GCAGTTCCCGGAGCTCGGCATGACGAGCGCCGACTGCCAGCAGATGACCTGGCTGCAGTC
CGCGGCCACGCCCTTCATCAGCTTCTCCAGCAACGGCACGCTGGAGGAGGTGCTCCTGAA
CAGGACCGCCAGCCTGAGCACGTCCACCAAGGGCAAGTCCGACTACGTCCGGCGCGCCAT
CACCAAGGCCGCGTGGGAGGAGATCTTCTCTCGCTGGTTCGCCATGGACGGCGCGGGGCG
CCTCATCCTGGAGCCCCACGGCGGGTTCNNNNNCCCCACCCCCGCCGCCGCCACGCCGTA
CCCACACCGGAACGGCGTGCTGTACGTCATCCAGTACATGGCATTCTGGCAACAGCAGGG
TGAGGGCGGCGCGGCGGCGAAGAGCTGGATCGGCGGCTTATACGACTTCATGGGGCAGCA
CGTGAGCAAGAACCCGAGGCGGGCGTACGTGAACTTCCGAGACCTGGACATCGGCCAGAA
CGACGACGACGGCACCTTCGACTTCGAGAACGGCCCGCTCTGGGGCGAGCGCTACTTCGT
GGGTAACTACCGGAGGCTTGCATCGGTGAAATCCGTGGTGGACCCGACGAACTACTTCAG
AAACGAGCAGAGCATCCCGCCGCTGATAGAGACGACGACGCAAGTGATGTAGCAGAGCTG
CTGCATTCATGTGCGAGAGATGTCCGACAAATTAACACTTGGATCCTGATGTTCCTACTA
CCGGTCGGGATCAGTTTGCTTTCATGAATAAACTAAACAGAACATGCTATCATTGTATTT
CTGTTGGTTAACCAATCGTGATCGATGGCACTGGTGAATAATAAAGCTAGTTGTTACGTA
CTACGTTCTTGGTTGAAATTTTGGTTGGATTGTGATGCTTGTGGCCTGGATGTGTGCATG
CCTACTGAGATGGTAACGATAAGGCGAGTCGTGGCCCGTTGGGTGCCACGTACGGGCAGC
GCTAGCTAGCTAGGTGTATCGCGGCTGAAGTTTTCACCGCGTGGATTGTCGTCGTCGCGT
ATAGCGTGTCAAGACGACATAAGCAACATCAACTTTCCCCTCCTAAATCCGAGTAAAGTT
TAAAATAAACCCTAGAATCGTAGAAGCCGATCCAAATGAACCTTTATCTTTAAATCCCTG
AAGTTCATACCTAATCTTTTTATCCCTTTCTATCCTAACCCTCGGTATGTTTTGTACATC
GGAAAAACATAATCGTGACCGGGAACTCGATTTTCTCACTGTTGGATTGGTCAACACATC
ATAACTATAAGAGAATTTTTTTTTTCTAAGGATGATATAGAGTAGTTTTGTGTGCTAGCT
ATTTCCATTCAAGTGCGTTACTGGATGTTGCCATGCAAACCGTCATGTCCACTGCTTCAA
GCACTCCTCTGCACTGCTCTACTTGCCACTCTCTGTGTGACCTCTACTTGACACTCTCAT
CTGCACTGCATTCAGGCACTCCTCTTCCTCCACGGCTCGCATTCGTGCCGTGTGCGTGAT
AGCCACCAGAAGAAATCGATTGCTTTGTATTGGTGGTTGTAGGTAGCTAGCCTCCTGGAG
AATCAATCACAAGTTCTGTGTGTGTGCTGCCCCTCGTGTCATAGAAAAACTGAGCCAACT
TGCGCATGTGCTCGCATCCAAAAGTAATCGGCGAGAGGATGCATTGCATTGGCCGCAATA
GTGATAAGATCTAAGGCCGACAGGCGTGGCAGCGGGATTACTCCGCCATGAAGTTTGACT
TGTTGACGTTCCTCGTCGAGTACAAGAGCAGTTTTCTAAGCGTGGAGCTGCTCATGGTCA
CCAACGTGGTGGCCAGCGCATAATGGCGAACTCGCTCACCAGCATAACCTTCACGGGTGT
GCTAGTACGGGCAGCCATCGGTCGTCGGCTCGCCGCTGCTCGGCATCGATCAGCCGACCC
TTAGCACCGTGCGGGTGGATCGGTCAGGGAGTAAATTTGAGAGGAACAAAATGAGGAAGG
AGATGCACATGACAAGTGGGCCCACGTAGTAAGTGACACTTAAAATCAATCCCGGTGGGA
TCACCCGTTTCCTATCACACCAAACAAGGTTTTACTCATACATTGTTTAAATTGACTAGG
ATCTGTAAATACGAGGTACAAACTTCAAGGATTTAAAGATGAGGGTTTATTTACGTCGGT
CTCTACGATATCAGGGGTTATCTTAGACTTCACCCCCTAAATCCCCTTAAAATTTGAATA
TCCTGATGGCCGAAACATCACAAGGCCTTCTCGATTTCTAGTCACTCTCGCTGGAAGCCT
GGACCACAAAAACATGAAGGCTGCAATTTCGAGTGTGCCGCCTGTTGCGTCCTGCTGGAC
ACACCTCCTCGTCACATTCGAATGCCTTCCTGAAACCAGTGTGAAAGCCGAAAAACCTAC
TCCAGCTACACGCTCGTTCATGAGTGGGCCGGCATTAATCAAAACGCAGGCCGAGCTCCT
CCTGTCCACCCTCTATTTAAACGAGGTCAGACGCCACGCAAGAATCGCATCGCTTCGCCG
CTCATCTATCTCCTCCATCATTTTCTTCACTTTTCCGATGGCCTTCGAAGAGCAGTTATC
TTGCATACAAGCTGGCTGGGTGGCACGCCAAGCCCGCCGGATACGAGCGCGAGCGAGGCA
GCTTGTTCCTCCACCTCTCTCGCCTAGCCCGACAAAGCTAGTTGGTGCCCCAAACCGATG
AGTGGTTCAGCAACTCGACACTCCAGTCCAGGTCCCTGATTAGTGCCGACTTGCTCCACA
CCGGCACGGTGGGGAGCACAGCTGCAACCGCACCTCCCATGCGTGCGACCATGCCACACA
GGCAGAGACAGAACCGGGTGCATGAAAAGTGATGAGTCGGTGCTCAGTGCCTCCGTGTTC
GCCGCCATCATCGAGGAGAAGTAGAACACGGGAGGCTGCAGCCGCTTGGGTCCCATGCAG
GCCACCGCTGAGGCGCCGCCGCCGTACATAGCCGGTGTCTTGCCCGGTTCTTCTTTTGCA
AGGACCATCGTCGACCCCGCATGGGCTCCACGAAAGCGGAGGCACCTCTTCCCCTCCCAC
TGAAACATCAGTCGAGGGTTCCACTCTGATGAGCCATGGGGAAGCGAGTCATCCTTTGCG
CTGAAGCATATGCCTCCGAGGCTCCTGGCAGTCTGGTTATCGGGTTGCTGGACATGAAGA
ACACAAAGGGATCCGGTGGCGAACATAGGTTAGGTATACCTCTAGAGCCGGACTAGCACC
GCTTAGTTGATGTAAATGTAATGAAATCCGTAAGGTTTATACGAAAATACGGTATTTTGT
TATGAAATCCATCATGTTTATATGAATGAAATCCGGTCGTGTTTGCACAAATTTCGTTCG
GTTGGTTCTAGTTGTTGTCAAAATGTATACGACTAGGGTTGGGTGTGGTACTCCCGCATC
TGTCTCCGGGAACTAATCCCCAAGTCCGCGGACAAATCCGGGAGAAATTGTGCAAGTTGC
CGCTGAAGATGCCCCAAGTAGCTCTTCTTTTTTAGGGCAGGGGGACTGCCCGGGGCCGCC
ACAAATAGCGCACTAGGACTTCCCTAGTCGGTAACAACAATGCAGTGGGTGTTGGGAACA
GGCATGTGACAGGCATGGGATCGCTAAATCACCCATTTTCTAGGAGGATCGCTAATTCGA
TTGAGATTATCAGAATACCTGAAAGTGCTAGTTATCGACTAGAGGGGGTGAGTGGGCGAT
TTTTATGAAAAGCTTTGAAACAATAAATATATTCAAAGTATACGGAAGCGATGCAGGATC
ACGTAGGGATAACAATCAAGGATCTAAGCATAGCATGCAATACTACGAAGACATTCAAAC
CGATAGAGCATAGTCATCATGTACACTAAGATGTATCAAGGATAAACTTATGTAGTGCGA
AGATAAACGACAGTTGGGAATGTCTTCGGTGAATGTCTTCGAGTTGAGATGATCAAGCAA
TGGCTTCATAGTATAGTATAGTAAGTAAGGTAATGAAAGATAGAGCAAGTAGCTTGATGA
AGACACAAGATTTGTTTGACCAGTTCCAGTTGTTGTAACAACTATACGTTTGGTTGAGGA
GGCTTAGACCTCGTCTTCACCTTGATCTCCTTGAGCCGAGGTCTCTCACACCACACCAAT
CACTCAGGTAAGTCTTCCGGGGAGACTTCTGAAACCCGTACAAACTTGGTCACCCGACAA
TCCACAACGATTTTTGGATTGTTCTAGACCATGGTCACCCGGCAATCCACATTGGCTCTT
GGATGCACTAGACCACGATGCCTACCATCTGGAAGATCACAGTATTCAAGTGTAACAAGT
CTTAAGTTCTCTCAAAACAGAATGACTTCGGTAATGCTCAAACACTATGGATCTAGGTGT
TTGGGTTTATCCTCGCGGGATAGTTTTCTCTCTCGATGTCTTCGAGGTGGGATACTCCAA
AACGACAATCGTATCTAACTCTGAGTAGCCACCAACATATGGTGGAGGGGTGGGCTATTT
ATAGCCAACGAGCAACCCCACATGATATGACCGAAATGGCCCTGTGTCAATGGCCAACCG
GAATGTGTTCCAATGGTCAGATTTCAAAGACACATGCGGCAACATTACGTGGGCTACAAG
CAATGCTAACTCAACCAACTCTAGAAGAGATTTCCTCTCATTGTCTTCTCTCGAAGACAT
AGGTGTTTTGAGTTGAGCATCACGTCAATGTCTGACTCGATCACATCGACCATGCCACTT
AACTGTACAGTAGTTGCTATGACCCACTAAATAAGAAACAAAACAAAAAGGCTTTGTCTT
CGTGTTTCATTATCTTCAAGGGATTATCTTCGCGTACCACCAATGGCTTCAGCCACCAAC
AGTGTCTTCGGACATTTTTGGGGGTCGTCTTCGATGGTTAAACTGAATCTCCAAGGACTT
CTATCTCTGTTAACCTGTGGACTCTCACAAACACATTAGTCCCTCAACCAAGTTTGTCTT
CGATAATCCAAAACTAACAAGGGGTGGCACTAGATGCACTTACAATCTCCTCCTTTTTGG
TGACGAATGACAAACTAGTTGAAGTTTTCAACGGGGATAAAAATATGTGAAGATAAATAC
TTGGAGATTATGATTTCAAGATATAAAGAGCTCCCCCTCAAGATGTACTTATGAAGATTT
TGTTTTGAATGCAAAAGCACATGGCAGGTTTTAATTAGTGGAGATCTCCCCCCCTATATC
TTGGAATCCAACCACTATGCACTTTGAAGATGTTCATCAAGATAATAAAATGCATAATGA
AAAATGGTCTTCTCTAAATGATTCTAGACGCATGTGATAAGATATAGAATAGCGCCACAA
GTATGATAAATAGAAATTGTGCAGGCGTCCATCAAGACTTAAGTTTTACAACCCAAAAGA
GAAAATGTTCGGAACGAGAGTTGTGAACTTAACAAAATAGCAACACCCAGCCCATATAGA
CCCGTTTAAATACTATCAATCCCATGCTTCTCCCCCTTTGTCATCGAATGGCCAAAAAGG
GCAACGAAATTGGGCACTACTCGTCCCCAGCCTGTGAAGACGTTGGTGCGGGAGGGTCGA
TGGAGATCCGTGCATTCGGACTTGGTGCAGGGTCGATTCGATCCGTCGGTGCAGCAGGAG
AAGTGACATCATCAGATTCATCATTTGCAAGGTTGACATGATCAGATGGTGCTGAAGAAA
AATAGTGATTGTCTTCAAGAGATGGTGTACTGCTCTACTTCTCCATGCGAGGAGGGGGCA
TAGAATCTGAAGCTCTTGTCGAAGCCATCCTCATGAAGATCATTCTCATGAGCCAACATG
GTCGATGTTTTCCAACATCTCCGGCAAGTCTCATGAGCAACATAGGTGTTCTTGGTGGAG
AGGTTGTGAATACGATTGATAACTCTGACAAGAGAATGCATTCATCTTTGCATCCACTCA
TGATCTTGATCCTGCTTTTGAATCAGAGAGACTAGAAGCTCTCGGTCAATCATTGCACGT
TCCCATCTGAGTGGGGCTATTGAGGCAGAGTGGTAGCAGTGGCTTCTGTTGCAGTGGCAC
TTGGCTAAGCCGACGAATTGATCCACTAAGCCTTCCCTAGATGGATCAAATGGTATGAGA
AGCCCTTCAATATCAAGAGTGCCACTTGTGCCTTCAATAATGAGGTTCTTGCTCTTGGAT
GGGTAAATGTCTTCATGTATGACTGCTACCTCTTGAGCTTGC