Contig Data
morexGenes
Links



Map Locations of contig_55554 (5725 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_55554

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68904 4 2548 bp MLOC_68904.4 Available Available LOC_Os02g21970.1, FRAME:-2, EVALUE:9e-21, 13102.m02462 protein 26S protease regulatory subunit 6B, putative, expressed





CDS Structure of MLOC_68904






Contig Sequence (5725 bp)

>contig_55554 5725 assembly3_WGSMorex_rbca.fasta
ATGTATGCAGAATACAAACAAAAAGGAAGTTGCATCAGATGTTCACAGGCACTGCTTAGG
TAGCTTTATTCTTGTAACCTTGTGTTAACAGATCTCGGCAGAACACTTCAGTTCAAACAT
GTGCAACAAAATTACGCTGGAAATCTTGAGCATAAACAAGGAAACCTAACAAATACTTAA
CAAACTAGGCATCTATTACATGGTCAAAGCTTAACACATGCAATATTTTTTGTAAGAACG
AAAGGAGAACCGAATGCAGAAACAAGGTCAACATATGCATGTTACAACTATCCGCATCTT
ACCTCACCCAGGTACTTCTGCACAAACTCTGAACCAACCACTCTGATAAAAGCAGCAGTA
GTGTGATGTGCCACAGCTTTAGCAAGCATGGTCTTGCCGGTGCCTGGAGGACCATAGAGC
AGCACCCCTCTTGGAGGATCAATACCAATCTGCATGTACAATTCATGATGTGTCAATGGT
AACTCAACTGCCTCGCGAATTTCTTGTTTTGGATATCACATCCTCCAATGTCCTGAACAT
AATCAGAACTAGAATATTGTTATTGAGGTTTTTTCAATCCACTGTATGAAACAACTTCAG
TAAGTCGTAAAGATACAGACTCCATGAATTGAAAAGTTCTGATCATGTTATGCACACAAT
TCTCAGGAAATAGAAAGTGCTCAATCTTGGTTGGCCTTAAGGATAGGAAAAATGACACAG
GATCAAATCATTGCATGGGCATACAGATGCCGAAGTAAGAAAGCCCCAAATAGCATAAAA
TTTAAAGGATTTATTAAACCATTCCTACAGTACTATGGTGATTTGAGATTTTCGATTATG
TTGGCGAGAGTAGCTTTATAACCTAGAAGAAAATAAACCGGCAGTACAAAAATTGCCGGT
CGGTCTCCAAAACTGATCCCAGCAATTTAGAACACAGGCCAGAGGCAAATCCAACATTCA
ACCAATCTATCTGCCAAAAAACTACTGTTCATTGAACAATTATACTAAGAAACTATTACC
CTACTAGTACTGTTATTATTATGGGTAAATAACTGAGAACAGTAGCAGAGAATATACATG
TTACAGAGACCAGCTAGTCAATGCATAGCTATCTTTTCCTGTTTATCAGAAATGCAACAC
TTGTACTGTCAGCATAAAAGCTGCAGAAGTTATGTACATGACTGCGGAAACAACCAAAGC
ACACTTCAATTTCAGGCAAAGCAATTCATTCACAAACATCATCAATATCTACTACTATAG
CAACTAATTCATATCTACTAAAGGATGCCATAAATCATAATCTACATGAAGTACGCCCAA
ATTGAACACGGGCCACCGGCTAATCCAGATTCCACCAATCTATCTGCCAAAAATCCGCTG
TTCATTGAACAATTATACTACTCAAGAAACTATTACCATATTACTGCTACGTTTATTATT
ATTATGGGCAAGTAACTGAGAACCGAAGCAGATAACATCCATGTTACAGAGATCAGCTAG
TGTGAATCCTAAATTGGTCAACAAATTCAGAGTACCAAATGCATCTAGGGTTGGCAGAGT
CGAAGACAGCGATCCTAATAAAGCATCAAATGAGCTAGGGTTCAGACAGATCTGAGAAAC
CCATAGCGAGTAGAGGACGTTGGGCTTCTCGGAGGAGGCGAGGAGCGAGATGCTGGAGTC
GGCCTCAGGGGCAGCACGTCGACGAGGGCGTTGGAGTGGCGGTGCAGGGCGACGGAGGCG
GAGGGCTTGAGCCTCTCGCCTAGGCAATATCTCGAACACGAAGCGCGCAACGAAACTGAA
GCCACGGTGGCCGCTGGGAGAGGATGGGAGAGCTGGTGCGGTACATACCGGGGAAGCTTC
GACGTCGAACGAATCGGCGCTGGCGCAGCAGCGCGCCCTCCACATCCTCTTCAGCGTCTG
AGTAGCCTGTAGCCGCCTCCGCCGGCACGGGAGCCGAGGGTGACCGTGGGGGTGCCTGTG
CAGCCGTCACCGTCGTCGGAACTATCGACCGCATCCTCTTCATAGGCGCCGCCTGGGAGG
ACCACCCATCGCATCTCCGCCGACACCGTCTTCGGCAGCCTCCGTGTCAGGCACAAGGCC
TTGGTTGGGTACGGAGAGGAGGGGCCACGTCCCGTACGCCGCGCTCGCCGGCCGGTCCAT
GCCGATGTCCCCTCGAAGCAAGCTCCAGCGGCAGCGCTCGCCGTCGCTCTGCACACCGCG
CCGCCGCCGGCCATCGACGCACTCCCCGTCGCCCCGCGTCAGTGCGGCCGAATGCAGTCG
ACGTCGCCCGCCAGTCGCCCCGAGACCGAACCGCCGGCCGTGTGGGAGAAGGCCGCGGCA
CGAGGCGCGCCGTTCGACGGCGTTGATGGGGAACGAGTCGGCCCGCGGGGCGCGGGCCGG
TGCGGACGAGGCGCTGGCGCAGCAGCGCGTCCTCCTGATCACCCCCTTCAGCGTCCGGGT
AGCTGAGTTGGCCGGTGACCCAGCGCCGAGTGCGCCGTCGAGAGGAAGGCCACCCGCGGC
GCTCGCCGGCCGGTCCACGCCGCCGCCCCTCGAAGCGACCTCCAGCGGCGGCGCTCGATG
TCGCTCCGCGTCAGGCGGACACTCTCCGTGAGGCCGAACCGCCGCCGGCGGCACGTGGTG
CACCGTTCGACGGCGTCGATGTGAAAGAAGGAAGGGGAACTGGGGAAGGATGGTGGGGAC
TGGACAGGGGCTCCGCGGCATATTCCCCCGCTCTCTCTCTTCCGGGCGGGGCGGGGCGGG
GCGGGGCTTGAATGATTGGGTGGGCCCACGTGACGATTCTGTCGTACATACCTCAGCGGC
TCAGCGCCAGCTGGGGGGATCGGCCAGGCCAGCCGCATCTCAGAGGAAACCTGTTTCTAC
TTTGGCTATCTCCTGACAGAAAGCGCTCAAACGTTTTTATCTTCGCCGTCGCAACTTTTT
CACTAATTTGATATTTCTGTTTGTGGTTGTAAGATCAACTCCAACGCTGCGATTCAAACG
GACGCGCGGTTTATCCGTTTTTCGTCCGTTTGGGTCGGACAAACGAATGATGGTGTTTGC
TTTTTCGAATTGATCGGCCAGACCGTCCAACGCAGGCTCGGACGCAAACAACGATAAACA
TAATTAAACATTAAAAGGCCGGTCAAAGCTGGCTCAAGTTCATATAAAACATTATTAAAC
ATAAATAAATAAAAACGTGGACGCCCTCGGTCGCCCTATGCATCATCTTCGTCGTCATCG
TCGGGGGAGGTGAGGTCGATGAGCTCCAGCGCCGGCCCAGCCCAAGGGAACGCTGCCTCC
CACGCCTGAGCAGCGTCCTTGCCCGGCAAAACCGGCGGCGCAGGCTGACGGGCTCGCTCC
TCCTCCTCCCGCTCCCGATGCTCCGCCTCCTCCTCCTCCGTCCACCTGGGCTCGAGCTTC
ATCTGCTCCGTTGCCTCGGCCTCCTCCCTCGCCAGTGCCAGCGACTTATGGTGCAGGAGG
TACTCTTTCTCCTCCTCCTCCGTGCATCCATACCAGACGAGAGTCGCGGACACCCACTCC
AGGAGCTGGCCGGTCCACTGGTAGGTGTGTGCCTGGCGTGCCTCGGCCTCAGCGGCCGGC
AGAGATGGAGGAGCAGGCACGACGCAATCGCCCGTCGCGGACAGCGCGAGGGCCTTTTCG
AGACCTACCTAGTGCGCATCCTCCTCGCGCCTGCTCTCCTCGATGGCGTAGGTCGTTGCC
TCCTCGAGGGCGGCTTGGTAGGCGGCCTCCTCCTCCTGCTCCTCTAGCTTCACTTTGAGG
GGTGGTGGAGGGATGGCCGTATCAAACTGGGCGTCGTGGATGTGCTCTCGCTCGTGCTCG
ACGGCGAACCAAACCTCCCATTTATGGGAGTCGGCCGCGTACGTCGGATCGCGCCGGTGC
TCCGGACTGAGGAGCGCGCGCCGCCGGCGGACCTCCTCCGCGTGCGCGCGCGCAGACCGC
GGCACTACTGGGATAGGGATGCGGTCGGGGTCCAGATGCCAACATGGGGGAGGTTGACAT
CTGGGTAGGGCAGAGCTAGCTTGTACTGCCAGTGCCATCGAGCTTGGTGGACTGGGATGT
ACAGACGCTCCCACTGTGGCACGCAGCGGCGAGGTGGCACCGACACCTTGGACGAGCTCG
CGCCGAGGGTGAGCTTGCCCTTGCCCTTGCCGAAGAAGCACATGGCTAGGGTTTCGTGGT
TGCTGCCGTGGGAGCAAGCGTGGCCAGATGTGGACGGGAGGGGGAAGTTGATGAGGCCGG
CCCGACGCATGCTTTGGAATAAAAAGGACGACCCACGGCCACCTTCCACCCACTTCCGGG
CCTTGTAGGTAGGTGGTCGCATTTAATACGACTGAGGGGTCATTGGTCGGCGGATGAGTG
GGGCCGAACTATGTTTTTTCAGTACGAACAAATGTTATTTATTTGTTATATTTATGTGTA
TGGTAGACATGAATGAATTCACATGAATTTAATGGTTTAGGTATGAGAAATGTGAATGTC
CAGTAGGAAATACGAGAAATCGACGTCCGTGAAACTGAATTTGTGTAGTTAGAGCATCTA
CAGTCAGATCTCTCGAACCTATTCATAAACGCTCGGGCAGGCCGCCCGATCATTGACTGA
TCACAAAAAGCGACCCCAACGGGCACCCTGAATGGGCCTCAAGTGCCCGGACTGACCGAC
ACCCATCATATCCAACCAAAATATGGGGCGGATATGAGGGCGCCCGGGCGTGTCGGCCAT
GTTGGTCTGGCATTGTGGACCCACACGTAATCGTGCGAAAACTCGGCGGTCCGATTAATA
TCTCCTCCTTTTTGGGGGAGGGGGTGTGAACGTCGCTTGACACCGGTCCAACGGGCCGCG
TAGTCAGCTATTTAAGCCCACCGTCGACATCAAAACCCTACCCTCCACATTTTCCTCCTC
TCGTCCGCCACGACCGCCCCTTTCCACTCCCCGTCCACCATAGTCGTTAATAAGCGATGC
TCCCCACGCCGCCGCCACTTTTTAACATTGGAGCATCGGATGCATCTCCTTGAGCAGATC
CGGGAAAGGCACGAAGCCCGGATCACCGCGGGGCTACCTCCTGGTGCAGTGGATCAGTAT
GAGGGGTTGGAGGAGGAGGAGCTGACAAAGAATGTGGAGGTGTTGGGGACACTGATATGC
AGCCGGAGCAGCAGACCATCCTCGATTCCATCCGTTCAAAGTCGGATGCGGAAGCCAAAC
ACCCTCGTCGGCGGAGGAGGCGGAGATGCTCGCCTACGTGTATGAGTTTGAGGAGTAGGA
GGAGTCGGAGCCCTCCTACGCGTCCGTCTACCCGGTACACCGACATCGTGGACATCTCAC
GATGATGGCTAAGGTGGTACGTAGGATATTTTTTGCATGCTTTATATAAACCTAAATTGA
AATATAAATTTTTTGGATACAAAATAGTAAATTTAAGGCGTGTCGAGTCACTGTTTATGG
ACATATTGACCAATGTATAGGGAGCCGAATGGAGGCTCCGGATGCTCCAGCCAATGGTTG
GATGGGATTAGGCCCTCAATGACGTATGGACATGCATGCACGTACCCACGCTCTCCTACT
CTCTCTCTCTCTCTCTCTCTCGTCACAGACTAATTACACAGAAGCAAAAAAGCACCGCCC
TGACACACAACAAACCCTTCCATTAATCTCTTTTCTCCTCTCTCTCTCTCGTCACAGACT
AATTACACAGAAGCAAAAAAGCACC