morexGenes - Barley RNA-seq Database

Contig contig_55538
Source Contig contig_55538
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55538 (9063 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_55538

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68898	1	377 bp	MLOC_68898.1	Available	Available	None
MLOC_68897	1	536 bp	MLOC_68897.1	Available	Available	LOC_Os05g08740.1, FRAME:+3, EVALUE:2e-43, 13105.m00969 protein hydrolase, alpha/beta fold family domain containing protein
CDS Structure of MLOC_68898

CDS Structure of MLOC_68897

Contig Sequence (9063 bp)

>contig_55538 9063 assembly3_WGSMorex_rbca.fasta
CTCCGTCAACGTGTCAATTTCTAGTGCTGTTGTTTGAGAAGTAGTAGTGGCGCACCCGGA
CTCCCCGCACTCTCCCTCGTCCTCGGCTCTCTTTGGGGGGTGCGGGGTGGTCTCATCAGC
CGCGCAGCTTATCCCTTCTTCAACCCTGGTTGGCTCCGTGCCTCGCATGTCGTCCCCTGC
TCTGGAGGTCCTCCATCCTCCTTTGCCGGGAGCCACTTCCAGTCCGGCCTCCATAACGTC
GGCCATGTCTCTGGCTCCTGCGTTGTCCAGCCCCATGCTGCCTGCCCCGACCACGTCTCC
GGGGCTCCCGGATACCATCGTGCTGCTCCCGACCCTAGACCCACACGTGCCATCCCCGAA
CCAGGGCTGCCTCCTGACTCCACTCCCTGCTCCCGTGCTGCTCAGCCCCCCGTTGCCTTA
CCTGGCCCCTGCTTCACCTCTCGCCTGGTCCGTGGTGGGGATTGAGGAGGTGGCCACTCC
TGATGCCACACAACCCGACCCCCCTCGGTCTGCTGCATACTCTAGGCGGGTGCGGTCGGC
ACAGACTCCTATGTCCGCCTCTAGGCATAGAGGCAGGGTCGAACCTACTCGCCCGGTGGA
CCACCCGACGTCGTCCTTAGCCGAGCAGGCGGAGCTCCGGGCCATGGTCCGAAACCTCGA
GACAGGTACTCTTGTGATCCGTGCATCTTCAGCCTCGTGCTCGTTCTCTGACCTTGAGTG
AGTTCCACTTGGCCTGCTTGCTAAGGTTGCGAACGACTCTGCGATAGTTTTCAGGGGGAA
GGTGGGGCCCCCTTTTGAACAGATTGAGGCTATTCGGGCTCGTGAGATTCTTGACGGAAA
ACTCGCGGAATCACGTGCCCGCCTCCTACGGACTCCATCCCAGGAGTCGTCCACCATCCA
TCCCCCTGCCATAGCTGCAGCCGGGGCAGAAATCCGTGGGCGTACACGGTCCCGCACTGC
TGCACTCCGCGCCCTGTGTGCCTCCCTCGTCCTCGGGTCAAGCAACCCCTCCATGGTTGT
TTGATGCGAGTCCACTTCTGTAACCTCCGCGGTTTCGGCCAGGATGGCCATCGCCGCCAA
CTCATCGAGCACATGCGAGATGAGCGAATTGACATAGTTGATGTCCAAGAGACCATGTGG
ACGGACTTATCCCTCCAAGAGTTGGAACACCTGAGCCCTCACCTCTTTGCTTGGCACTGG
CTCCCTTCTAGTGGGACGACGGTCCACTCAGGTGGCATCCTTCTAGAAGTGAAGGATGCC
ACCTTTGAGATATGTAGCACGGACCGGGATGAGTTCTATATTAGCATGGAAGTTTATGAG
GGGGGCATCAACTTCAAATGGGAGATTGTTGTTGTCTATGGTCCGTCCGACCACCGCCGA
TCCGAGTCTTTCCTTGTTGACCTCCGCAGGACGATCTCCTCTGCCCCTCTCCCGGTGGTG
GTGGGCGGCGATTTCAACCTCATCTGCTATGCTGCTCACAAGAGTAATGATCGGTTGAAC
TTCCCGCGTATGCAGCTCTTGAACGACTGCATTGCGGATCTCGGCCTCTGCGAGCTTGAT
CGGGTTGGTGCCAGATTTACCTGGACCAACCGCCAGACTAACCCGACGTTGTCAGTCCTT
GACCGGGTTTTTGTGGCCCAGGTATGGAAGCTCAAATTCCCCCTTGCCTCTCTTCGTGCC
ATTACTTGTGTTGGCTCATACCACGTGCCCCTGCTACTCTCTTCGGCGAATGATAGTCTG
CCTCCTCCACCCCGCTTTCGGTTCGAGTCCTTTTGGCTTAACCAGGCCGGGTTTGTCGAC
GTTGTTCGTGCCTGCTAGAGGGCCGCTCGAGACTCCCCTCTCCGCTCAGTTTCCGCTGTT
GACTCCTGGCAGCTCGGTGCTAAGCTCGCCCGACAATTTATGAAATGTTGGGGTGCCAAC
CTGGGTCGCAACCTTCGTGAGCGGAAAAGGGGACTCCTCGAATCCATACAGGCCTTAGAC
CTCCAGGCAGACTCCTCTGGTCTGTCCCCGGATGAGTGGCTCCTCAATTACGACCTTGAG
GACCACTTGTCGGTGATCTACACCAATGAGGAGGCTTTCTGGCACCAACGCGACACCCAA
CATTGGGTATTGCGGGGGGACTCCAACACGGCGTACTTCCAGGCCATCCCTAACGGCCGC
TGCGGCGCAACTCCATTCCCCTCCTGTGGGATGAGGAGACCCTCCTCCAGCTCCGTACTG
AGATCCGCGCTCACGTCGATGGCTTCTACAAAGCCCTTTTCTCACCCTCCCCTCGGGGAG
GGTTGTTTCTGGCCCCGTCCTTTTGGGACCCTCACCAACTCGTCACTCATGATGAGAGCA
TCGCCCTGACGGCCCCCTCCTCTGAGGCTGAGGTTTGGGCAGCAATCAAGGGGATGAACC
ATGCTTCTGCCACTAGTCCGGATGGCCTCCTAGTGAAGTTCTTCCAGACCTTCTGGCATG
TGATTAAGCTGGAGGTGATGGCCCTGTTCGAGGAATTCAATGTGGGCACCATTGACCTCT
CCCGCCTCAATTATGGGATCATCTCACTCATCCCCAAGGTGGTGGGGGCTTCTGACATCC
GCCAGTTTCGGTCGATCACAGTGATTAACATGATCTTCCGCATTCTGGCGAACGGGTACG
CCAATAGGGTCACCCTTTTAGCTGACCACATCACCCATCCTAATCAATCAGCCTTCATCC
GCGACCGCTTTATCTTGGATGGCATCTTAGTCTTCCATGAGGTTCTGTACGAGGTGCGCA
CTAGGCGGCACCATGCAGTCTTCTTGAAGATCGACTTTCACAAGGCTTATCACATTGTTT
CCTTGGCCTTCTTACGGGAAGTTCTTCCCCGCAAAGGCTTTGATGACCGATGGGTCACAC
GGGTGATGCAGATGGTCTCACCTGGTCGGACCGCAGTTACCATCAATGGGGAGACCGACC
CCTTCTTGCCCACTCTCTATGGGGTTAGACAGGGAGACCCCTTTTCCCCTTCCTGTTCAA
CATGGTGGCCGACGCCCTTGCCACCATCCTCGATAAGGCTAAGGAGGCGGGCCATATTCA
CGGGGATGTCCCCCATTTGGTGGGAGGGGGAGGGGTCTCCATCCTGCAATACGCCGACGA
CACCATCATCATGGTGGAGGGCTCTGAGGGTGACATTGCCAACCTTAAGTTCCTCCTCAT
GTGCTTCCCGCAGATGTCTGGGCTTGAAATCAACTTCGACAATATTGAAGTTATGATCCT
TGGATATCCTCCGGAGGAGTTTAGATGATTGTCCACCACCTTAACTGCAAGCTTGGGTCC
TTCCCCACTTCTTACCTGGGGGTTCCCATTAGTGATTCGCGCCTCTCCGTCGCGGAGTTG
TGGCCTACGGTGACTAAGCTTCAACACCGAATCGAGTTGTGGCAGGGCAGATGGTTGTCC
AAGACAGCCAGGACCCTGCTCATCAACGCCTCACTGTCTAGCCTCCTGTTGTCCCTGATG
AGCTTCTATAGTCTCCATGAGACCCTCACCACGAGATTTCGAAGTACCAGTCTAGATTCT
AGTGGACTAGCGAGGGCGACATCCAGAAGTACCATATGGTCCGCTGGCCCGACATTTGCA
AGCCTCGCGATTAGGGCGGTCTGGGGATCATGTCGTCCAAATGCATGAACATCGCTTTGC
TGACCAGATGGCTGTGGAGGATCACCAATGGTGATGGCGGTCTTTGGCTTGACATCATCA
GGAACAAATCCCTTCGAGGGCCAGCCGCTGGCCTTTTGCCAGCGCTCTGGAGGGTCCAAG
TTCTGGCAGTCCATCATTCAGCTGCTCCCGGTCCCCCGTATTGGCTCCTCCATCTCGATC
GGGTCCGGTTCTGCGACGTTGTTCTGGTTTGATAGGTGGGCGAGCGACGTACCCTTTGTC
ACCCGCTTTCCGGACTTATTCTCCATCGCGGTGGATCCTAGGACTTTTGTCGAGGTCGCC
CTTTCGGATCTAGGGCGCCTCGCGTTCCGCCGTCCCTTCGGCCCCTGAGATGTTGCTTCC
TGGGATAAGATGCTCGAGTGCATCACTTTCCACACCCCCGACGTTGACAGTGTTTCAGAT
CGCATATCTTGGCGTCTGGAGCTCTCGAGCCACTTCTCCACTCGGTCTCTTTACCAAGCC
ATCGCCCCATCTACGGCACCGGATGCTATCTCAGCTGTTTGGGCCATCCAACTTCCGCTC
AAGATCAGGATATTCTTATGGCAGTGGATTAGGGGTCGGGTACCTTCTGGGGTGGAGGTG
CTCAAACTTAATGGTCCTGGGGATGGGATGTGCCCCCTCTGCGATACGGTGGATGACTCG
AACCACATCTTCTTTGCGTGTGTTATGGTTGAATTTCTTTGGAGTTGTTTCCGCGAAGCC
GTTGGCGGTCACTGGTGTCATACCAACGTCCCCGACCTCTTCGCGAAAATCCCGTCCGTT
CCCCCATCGGCCCGCCACATTAGGTGGCTGGCCATTGGGGTGCTCGTGTGGACGTTCTGG
ACGGTCCGCAACAAGCTTTTGATTCGGCGTGTTCTCCTTCGCCATGCCACTGACGCTGCC
TTTAAAATGTGTGGTTCCTTGCAGCTCTGGCGGCCGCTTAGCCGCTCTTCCGACCGGGAC
GCCATCAACACCATCATCGCCGACCTTCGCTCGATGGCGCTTCGCCTGGCGCCCCCGCTT
CCACCGCCTCCTTCCGAGCCGGATTAGCCTGTTTTGGCTGCCCCACCCTGTGTTGGGTCT
GGGCGTGTGTGTGTTTTAGGGCTTGTTGAGCTGTGTCCTCAGGAGAACCTCATATTTCTG
TCGTGTGCTACTTCGTGTGTGTGGGGGACTTGAACTTATGTTGGATGTTGCGCTCTGACG
GTTTGTTTTATCTATAAAGCGGGGCGAAAGCCTTTTTCTGTAAAGGATTGGAGGGGATTG
GCTAGAATTGAGACATATTCTGGCTTACCAAGGGTATAAATCCATCTCAAACCCTTTCAA
TCCTCTTGAATTCACCCTCAACCGAATAAGGCCTAACTAATGAAATCTGCCTTTATTCCG
CAAGATAAAAGGGTAATAAAGTCTTCCACCTCTCAACTGTTTTGGCACGAACGAAAAGAA
GGATTGCCCCGGCCGATCTCTGCAGCCGTACCTGAACTAATATTCGACACCGGTCCGTTG
AAACATTCGTCGACGGATTTGGTGATGGGCCGGTGAGTATAAATATGGGAAATGGATTCA
TCACGCACAGCTTCCGTGTCACGGAAATAACGGCACGACAAAGACATAGGCATATACAAA
TCCTTTGTTTCCATGCAAGTGACATACCACATGGTTTCAGTATTTCGTGGAGTGCGAGAA
GGACACGTTCCACAGAAACCGGCATAGGATAAAACTACCCCATCTCAAACTGCGACAAAA
TCGGACCATCCGGAGACCTAACCCTCTGGTTCACGGAATCTGCCCTTGTCACCATCACCG
CGCATTGTGCACACGCAAAACTCCAAGTGACACCTTTTTAGCCCCTCGTCACCGTCGATG
TGGACGCAAGATAAACAACCGCCAGGAAACTCTTCGAGGCATGCAGTGGTCTCTTCTGCT
CTCTCTCTGGTATCCTTGTAGCCATCTGGATGTCACATGCAGCTGTACACATCTGAATCT
GAATGCCCAGTTTTCAATTCTATGAGCTTTTCACTGCCTCCTGTCCTCCCTCTTTAGTTG
ATCGATCTTATCTTAGTGGTTGGTTTTTCCCTATAAATTGAGGCCAGGAGTAGCTATGTG
TTCTCATCGCTAACTAGCACGGGATCCTTTAAGCGATATATTGTAGCCTCTTTGCTCCTC
ACTGCCGCACTCGAATTACTGATACGAGATGAATGCGACGGTTTTCGGCAACGTCGGTGA
GACCCTGGTGCTCGCCCACGGCTACGGGGGCAGCCGGTTCATCTGGGACGATGTCGTCCC
GTCGCTGGCGGAGAAGTTCCGAGTCGTCGTCTTCGACTGGAGCTTCTCCGGTGCGGCGGA
CGATGGCGCCAGGTGCTCCGAACGGCGTTTTTCCTACCACGACCTGGCCGACGAACTTGT
GGCGCTGATGGACGAGCTCGAGCTGAGGGGAGCAGTGTTCTTGGGGCACTCCATGGCTGG
CATGATCGGCTGCATCGCGTCGCTTGCAAGGCCAGACCTATTCAGCCACCTCCTGCTGGT
TGGGGCGTCACCTAGGTTGAGATCACACTCTCAGCTTTCCTACTACACGATTCATTTAAA
CAGAAAAATTGAGCCTAAGGATGTCACTGAACCATGGCCGTCTTAATTGCACGTACGTTC
GACCAGGTACATCAACGACGACTGCTACGAGGGCGGATTCGGCCGCGGAGAGGTCGACGC
CATGCTCGGAGCCATCGAGACCAATTTCACAGAGTGGGCGCCGGTCTTTGCTGAGACCGT
GGTTGGGGTGGACCAGCCGGCCGCCGTCGCAAAGTTCGCCAAGCAGCTGGCAATGATGCG
CCCGGCCACCGCCCTCCGCGTCATGCGCGCCGTGCTCACCTGCGACGTCCGGGACGTGCT
CCCGGACGTCAAGGCGCCATGCACCATAGTGCACTGCACCAAGGACGCCGTGGCGCCCCT
TGCAGTTGCCCGCTACATGCAGCACCGACTGGCCGGATGTGCTGATGGCGGCGGGGCCGC
CTCGGTGCTCATTGACTCCTCCAGCCACTTTCCACAGCTCACCGCGCCAAAGGAGTTCGT
CCGGGTCATTCAGGCCATCTTGCTCGACCACTGATCAGCTACTACAACTCGCAATAATGG
ATCGATTTCCATGGCGTTGTTGAATGTGAATTAAAAGTTTGCGTTGCTTAGTGTTTTTAC
TGCTCTAGATTCGTCCCTCAGTTATTTGCATGCATGCTTGTAGTTCTCATGAATAGTACA
GTAGGAGTACATTTCTATGTCAACGCCCCTTGTGCTTTCCAGGTTTTTGTGTGACAAACA
GGTGAACTATGTATGACTTGTGAATGCAATAAAAATATTAGGGTCTTGTAATGCAAATGC
CAAGGAAATATATCCGGATGCTTTCCAAAATTGTACATATCCGGAAAACCATTGGTGGAT
CTCTTCGGTTTGCCCGATTATTATATCTAAAAAATGAATTTTGACTTCTACTGCCTAATT
TCATGTTTTTTACCACTAAAACTTCATCTTTATTAATTGGTGCTCCATTTAGCGGTTTTT
TGTACATCTTAATTCATTTTAATTGAACTTGTGCCACAAATTATTCCATTTAATTTTTTC
TTTGTTTCTGTTGCATGTCACATAAGTAGTTTTGTGAGTGTGACATTGGACAGTCTCCTT
GATAGCATATCGCGACTAGCCGGAAAAACCAGAGGGGAAGCAGTAAGTAGAATTATTCAG
GTTCGGGCCCTCTCTCTGTTGGTAACACCTACTCCTGCTCATACTGTGTTGATCTATGTT
GGGGAACGTAGTACAAAATGAATATATATATACCGCACTAAATAACAAGCCCGTGATCGC
TACAAAAATGCATGAGATGGATCAATCTTTACCAACAAAAACGTTGTGGAAAACTAGATG
TTCATGAAGACATGCCAATCCGCACAGCCTACAAAACATGTAACATTGAAGGGTTAGCCC
TCCCCTCTATTTACAGGTGGCCACCGGGTGCGCAACCTTGGAGGAGGGGCAATGCGCCTA
GGGCCGACGCACCTGGGAGGGAGATCATGTCAGAGGATCCTCTCTCAACCATAGCCGCCC
TTCTTTTCTAGCCCTCCAAGCTGAAGGGGTGGGGCGCACCACCATGGGAATCAACTAGTT
TGTCGTGAGTGGTATTCTTTGTCGTTGGCATTTCATAAGGGTAGACGATAAAGACCACTA
TGCCCCATGCGGCGCAGGTGACTAGCACCCCTTAGGCCAGTCAAGGGGGCAACCCTCTAC
GGCCACTTGGAACCTTCCAAAATGTTTTGAAACTTTTCGAACCTACCATGGTACCTCCAG
GACAGTGTCGATATCGCCGGAACAATTTTGGGACCATCCAAAATGTTTAGTATCATCTGA
AGCATTTCCAGTACATTTGTTTCGTACTCCTAATACCTCCTAGTGCGTCCTCAAACCGCC
AACCATTAGGCATGTGATCCTGCAGGTTCCATAATATGTAGACATGACCTGGAATAACTT
TCGGTCAATAAGCAAGAGGGCGGTTTGGACACCCATATTGATTCTCACATACACGCAATG
ATATTTATCTAGCAAACAATTTTTTTGCATACTGATATCTCTTTGGCGTATATGTAATTT
TTAAATTTTTATGCTATTACAGTAGCATTCCTACATACTTTTATTATCATTTTATATTAT
TTTGTATTATTTTTTTGGACTAACATATTAATTTAGTGCCCAGTATCAGTTGTTATTTTC
TGATTTTAATGAAAAAGATACCTAGGAAGGTCCAAACATGATGCCATTTTTTGATGATTT
TTTCTAGACTAAAGGAAACCATGGAAGCCTAGGGAGTCGTAGAGAGGATGCTAGAGCGGG
CCACAAGGGCAGGTGGCGCGGTTAGGTTGGTGGTCGTGCCAACCAAGCTTGTGGGCCACC
TGAGCTTCCATTTGCCTAATTCACGGCTTATAAATTTTCATAAATCATGAAACCTTTGGA
ACGAAACCCGAAACAATATCATTGCCACGTGTCACATGTGCACTGGTTCGACAATGCCTC
CAATGATCATACCAGCCTTGGGATTGATTCCGGTTATAAATAACCATCCCACTTCAACCT
TAGATGTTCCGTTGTTCCGTGAGAGAATTGACATGAGTTTGCCTGAGCAACCCATCGTCC
CGAAAAATTGTGAGAATCTTAAGAGAGAATATCTCATGGCTTAAAAACTACCAAGTCATT
GGGCATCACTAATGAAATTGACCAAAGCGTAACTTAACCTTTTACTCCTATTCCCTCTTC
ATGGTCTCCAAGCGCACATGATTTACTTATAGCTTTTTTAAGTAAGACTATCGATCCCAC
AGGTAGCTGCTACCTCTTGAGCTTGTGCTGGTTTTTCCCTTAAGAGGAAAGGGTGATGCA
GCA