Contig Data
morexGenes
Links



Map Locations of contig_55533 (6471 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_55533

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68895 2 3189 bp MLOC_68895.2 Available Available LOC_Os06g43620.1, FRAME:-2, EVALUE:6e-167, 13106.m04568 protein haemolysin-III, putative, expressed
MLOC_68894 1 257 bp None Available Available None





CDS Structure of MLOC_68895






CDS Structure of MLOC_68894






Contig Sequence (6471 bp)

>contig_55533 6471 assembly3_WGSMorex_rbca.fasta
CGGAGACAGTGGCGGACGGAAGGGGGTCACCCATATAAATGTTATCTGTTTCAAAACTTA
TGAAAGTCATTTGCATTTTCATTTCTAGAGAGGTAGTCTTAAGAAACAAACTGCACTAAT
GCAGATTATCACAACATTAAAAAAAATTGATAAATAACATTCTTCAAATTGATATATCAT
GGTGATACGGCCACATCGAAAGAATGTGTGGCCTCTGTATATCATGATGCACATAACCAA
TAAGTTCAACGGACTAAAAAATAAACATCATTCATCAATAATAAATTAGTCCAGTTGTGT
GGGACGGATCTTATCCGAAGATTACATTGTCGTCCGTAGAGGGAGAAAACCTCCATGACC
GTATGCTCTAGCTCTGTAGACCACATAATAAAAAAGGATTTTGTCATCCGACCTCTATAT
CATATACCAAATATGAAATCATCGCATACATGAATAACACTCAGAAAATAAGTGTGCTTG
TACAACTTCCTTTGAGACGTGTATAACTTGAAAACTAACGAAGTAATGGCATGATGGCCG
TCTAAACGTCCCAACAAAACAAAAGCTTTGCGAACCAACAGTTATATCCTCAGTGGAAAA
CCTCAGCCCATTAGGGTTCAAGTCGTAGTGCTCGTATTTATCCTGAATTTATTTTAGAAA
TTTTAACGATGCACTTTTAGTGGGGGGAGACGTTTTCATCGGTTACGAGGCCCTATGGTG
ATTTCGTAAAATTTCAAGATGATATGTCGGCTGGGTTTATCGAAGGTGCTCCTTGAGATA
GTATGTGTGTGTGTATTTTTATAGATGAGTGTATACTTATATACATGAGCGCTTGCGTCT
ATATTGTATTATAAAAAACTTGACAGGACGACTAACTCTTGCCCTGCACAAATTTCTTCT
TCTTTTACATCTCATACAATGAAACAAACAGCCATGAGCATCACTATGTACAGGTTCTGA
GCTGTAATTAACAGTTGATGTATATCATCCATGTATCATCAATCCACTCACCACAGCAAA
CTGCAACAAATAACTAACTGCTACAAACAAATTAACCAATCTCGCAAGCAAAACGCCTTC
CTTTCTTAAATCCCCTCCTGACTCAGATCAGATCCGTTGTATCATCTGCATTCACGGTAA
AATGCCATTTCGATGGCAATAATCGGGTTGTGTCCATCCCCGGATGGATGCAGAGGGTCT
CCATTAACTACTAAGAATCTGATGGTACTGTGAACGACGGCATGCATGCGCATCGGTATC
AGTTGGCCGGGCAGCCCATCTCGTCGCGGACCCGGAGGAACACGATGGCGGCGCCGTAGT
GCGCGAGCGCGCCGGCGATGACAAGCAGGTGGAAGATCTGGTGGCTCTGCCCGCAGAGGT
CGAACATCCCGGGCCTCCACCGCTCGGGCACGCGGGTGAGGTAGAAGGCGGTGCCGACGA
GGTAGGAGGCGGCCATGGCGCCCTCGTAGGCCAGCGTGACGTTCCGGCGCGGCTCGTGCC
AGTTGACGGCGGCGGCGTGCACGGCCGGCACGACGCCGGATAGGCCCATCCCGACGAAGA
GCAGGGCGCGGTGGGCGCGGTACTTGGCGTCGCTGAGGCGGGGGGACATGAGCGCGTAGA
CGGTGGCGGCGCCGGCGAGCGAGATGGCGGAGAGGTAGGCGACCTGCCAGCGCGGCTCGC
ACTGGAAGATGTAGTAGATGGGCGGGAAGAAGGAGACGACGATCATGACGGCGATGCCGG
TGTAGTCGAGGCGGATGAGGAAGAGGTTGAGGCGGTGCGAGTGGCAGGAGAGCAGGTGGC
AGGCGCAGCTGCTCATCAGGCAGAACATGGCCCCCGCCAGGAACACGAAGAAGGGCCACC
GCGTCGTCGGCCCCACCCCCGCCGCCGCCGCCATCGCCAGCCCCGGGCTCGCCTGCATGA
ACGACGCCGCACCCTGAAACAATCACATCCACCGGCCGTACGTCGTCAAACTCAAACATG
TCAGCCAACTCAAACCTCACTCACCACCACCACCATGCATGCATGATTAGAAGATGAAAC
GGAGGCATCAAACGGACAAAGGTGACACCACAGTCTCAACCACCGCTGTGTGTGATCATA
TGATTCACAGCCATGAATTGCGTGCCATGCATGTGACGATGCAGGTGGTTAACGGAGGGT
TTTTTTTACCGTGCATGCGTGTGCGGCTGCCCGGCAAGTTGAGTGCACCAGCCGGCAGTC
CAAGCAGAGGCAGAACCAGCCGTGAGACTTGTGAATGGCATGTGAAAAACGGATGGCGCA
TCATCTCGCAACAGAAAGGGAAAGTGTCTCACACGGGATAAACTCCCGGATCACGCAGGC
GGCGCCCGCCGGGGTACTATTACTATAGGACGATTGGCTTGATCACATCAATCAACAGAA
AGCAAGCACATATGGTGCTTCCCAGCCGCTTAATCTTCCGATTACGTGTGTGCATCGATC
TCGATCGATGCAGAGGCCATAAAACGACGACGAGATGAAGGTTGTCGTGGTTGAATCTTG
AAAGGAACATGTGTATATTTTTGTCATGGCACTGTAAAAGTTGCAGTTTATATCTAGCAA
GGTTGGTCGAGTGAAGGCAACAGGAACCGCATGCCTGTGCCCCACGCAGCATCGAAGTTA
AGTCCGAACATCTAATCTACCCGTAGATAGCAGACAGCCAAGGCAGCAGCAGTAGCGACT
ACCAGTCTACTAGTACCACAGCTAGCTACTGAAAAGGTGAGCAATTGAATTGAATCTCCA
AGACATGTGGATCTGCCTGCCACTGGCAGACAGCAGGATTTCACCTCTGACAGATCATTT
CATCCTTCATCTCGTATTAGTTGAGGACACTTATGGGTGTAGGACATAGCATGCAGCACT
AGTTTTCCAATGCGAAATTCCTCTTGCATATAACCTACACGACATTTTTACGTGTACAGC
ACGGGCTTCACTATACTCCATGTCAAAACTTGGAACATCTTATAATAGCGAACAAAGCGA
ATACCATTTTCTTGCTATTACTAAATTATTAATGATTATCACGGAAAAGCAGAAAGGTAT
TTGAAGAAAGAGAAACGGCAGGCAGGCAGGTAGGTGCTAGTACTACTCACGGAGAGGACA
TCGCCGATGTTGCTGGAGACATTCTCTGCGACCTTGGAGATCGGCCTGCAGTAAGAAAGT
AATACCCAAAATGAGTCCAATTAGCTAGTCAATTTGAGTGAAGAAGATAGTATATACAGT
AGGGATTCTGAAGGTGATTACCATGAGAGGTGGCCGATGAGGTGGGCGACCTGGGGGAAG
TACTGGGCGAGGTGCCAGAGGGTGAGGCCGAGGAAGAGGAAGAACCCGAGGAGGTGCGTC
CAGATGTTGATGGTCTCGTTGTGCCAGGAGAAGACGCTGAGGAAGGCGTGGAGCAGCGGC
CACTCGGATCGGTAGTGGTTGAGGATGAACTCGTTCTCCTTCATGTACTCCGGCAGCTCC
TCGTAGCTCACCAGCCGGTACTCCTGCTGCTGCTGCTGCCGCCTCTTCCTCCCCTCCGAC
GACCTCCTCTGCTTGCCCCTCCTCTTCTTCGCCATGGCCGCCGACGCCGCCGCCTCCTGC
TCGTGCAGCTGCCCGCCGCCCATGCTGCTCTCCTGGTCCATGGCCACCGCGCGCACACCT
AATAACTGCTTCACACCGCCTCCCCCCACCACCAGCCTCGACCCTGTTTCTCTCTCTCTC
TCTCTGAAACTCTCACGGTGAGAGAGAGAAGGAAGGAGGAGGCTGTGTGTGTGGGTGTGT
GACAAAGGGGAGGAGGCTGTTGCCGGGGTTAAAAAGGACGCCCGCTCACACGCGCCGCAG
GCAGCTCCCCCTTGTCCTGAGCAAGCAAGGCAAGGCAAGGCAAGGCAAGAAATCTAGGAT
ATATACGCACGCGACTAGCATAAGCATAAGCTGTTTTCATGCTCCTTTTATATGGTGGTG
GAGCATATTGGTTGATTGAAATGTTGCTCGCATTTTCTCGGGTTGGTATACCTTCATCGC
AACAATATTTCCGGAAAGCCTCCGCCTTGATGAGGAATGAAGTTGATGAGGACAAATGCG
GGTGGAGCAGGACGGGGAGGGGCAACCACATCGGTACCGTTGGGTGGGAAAAAGGGAGGA
CGAAAACGAAATGAAAAATGCCGGCATTCAATTAGGAGAAGGAGTAGGGTTTATGATTTA
CACACGAGAGAAAAAGAAACCTGGGTTTAATACTGGCCACCTGCGCGTGGGCCCCTCTGG
CAGCAGACTCGGGAACCAAGGAATGAAATGTTTTTTGCAAGGTAGATAATTTGATGCATG
GGTGCGCTTCAAATTTCAAACCATTTAGATATGGGCAGTACTACGGCACGCCGGCGCGAA
CGCTCGCGTCCGTCGAGCTTTTTTCCTCGATGCAGCAAATTTCAACGCGATGCACCAATT
TTCGTCAACGATTGTAACAAAAAAAATAATTGTAGCAAAAAAATATCTACGTGATCGTAG
CAAAAAAACGAAGTTGATGATGCGTGATAGCAAAAGTCAAACGCCAATTGTATCAAATAT
CTACGTGAACGTGTATGTAACTTTTTTAGTGAACGGTTGCANNNNNNNNNNATGCCGGTT
GTAGCAAAAATTTACACAGTTGTAGCAAAAGTCAAACGCCGGTTGTAACAAAAATCCAAC
GAACTCGAGTTGCAACCAACCGTGGATGCAGCTTTTTAAAATGGACAAAATGTAGCAAAA
TGACAAACGTTTGAAGCAAAATTAAANNNGGTTGCAGCAAATCGGATAAAAAAATGTTGC
ATGGCTGCCAGCAAGGCGCGCGGCCCGCGCGCGATCAACCGAACGATTCGGTCGGCGCGC
CGGGTAGAAGCATTTACCTTTAAATATCTGAATAGCTCTCGGTAAATAACATAAATTAGG
ATCCAAACAGTACATGAATAGTATACTTTCAAAAAGACCTTAAATTTATTTTTTTGCAGA
GAGCTACTCGGATGTCCAAGTAATTTGAAATTTGAAATGGACATCACGCATCAAATTCTC
TACTAGGAAAAAAAATAGATTTCTCTGAATTTTTGTAGTACTTGTTTCAAAAAAATATTC
AGCATGATGGAGATGAGTCTGGAGCCAAAACACATCACTTCATCAATAGGTCAATCAAGC
CTCGGTTCGAGCAGTGACGGTTGAGGATAGGGGAAGACTATGCAACGGTGTGTGTTGGTT
GAGCCCTTGAGTGGAGCGGTGTCGACTAGGGAGCGACAACAAAGTGAACGCACGGGGAAG
GGGGCTCTTACGGCAATGGCAAGGGAGGGTCTAATTGAGTGGTGGTCGAGCGATTTAGGT
GACACAAATATGTGGGAGGAATAGATGGTGGGCTATGCTACTCGGCTGCTAGGACCGTGG
GTTTGTGGCCCAAAATATTATATGATAGTAAGTCTTAAAACTACGAGTGGGGCACGGTCC
ACACGGCCTACCCTCTAGGTTTGGCAACGTTGAAAATTATTGCACTTCTTGGTACTTTCG
GCATTCTCTTCGACCCCCTAGTACCATCAGTAAGAGTTAGTGTCAAACTTTTAAAATGTG
ATTGTCAATGTTGCACTTTTTTTAACCAAAACATCGGTTGGCCTAGGGGTTCACCTCCAT
CAACTGGCCCAGGTGACGGTACGAGGGAGGGGAACCCCGGTACCTTGCCTTGTGTGTCGT
CATTAGTTTAGGGTAATTAGGTTCGTCTCTCCACCTATGGTGTTTGGGAAAATGTGTCGG
TGTTCAGAAATTACCATCGATCCAATCAACATCCCCTTCCCGATGAAGGGGGGCGAGCGA
TGAGATGTTAAAGAACAGGTTGTCCTCTTGTGCTCTTTTGGACGATAGTTTTGGTGTACC
TCGTTGTTGTTGTTGTTATTGTTATTATTATTATGAAATGTGTGTAATGTTGGATTTTGG
TTAATGGGTCAAGTTACCTTTTTATGGGGGCAGCCAAAAATATTTCATTGTTTTAGGTCA
AGTTATCATAGACATCTCACAGTCAACTGAAACGCTGTCTTTCAATGTATGACCATCGCT
GAAAAGCCTGAAACAATTCATAAGAATGTAAGCGCCGGTATCTCGTTAGGACCCGAACCT
TAACTCGTACCGGATCCATCATATTTTTTACTGGAAAAAATATATATTAATATCATGAAG
ATACCAATTAATCGGATCCATCCATCGAGCTTAAACATCTAAACGCTAATTGAACCCCGT
TGGGTGGGTCTGCGTGGATGTTGAGCCTCATGTGCACCCCGTTCATCTGTACAGAAATGG
CATTAATGGCCACCGTGATGGGGAAAAAGAAAGGCAGAATTTTAATCCCATCCCTTTCAT
GTGCGAAATTCGGTTAGCTAGCCTCGTGTCGCGTCAACTAAATGTGCACTCCGTATTATA
AACTGTATATATTTGACATTCATCTGTACACGCCCCCCCCCCCCCCCCCCC