morexGenes - Barley RNA-seq Database

Contig contig_55447
Source Contig contig_55447
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55447 (8060 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_55447

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68842	6	4749 bp	MLOC_68842.2	Available	Available	LOC_Os04g45910.1, FRAME:+2, EVALUE:0.0, 13104.m04606 protein placental protein 11 precursor, putative, expressed
MLOC_68843	5	2127 bp	MLOC_68843.4	Available	Available	LOC_Os04g45920.1, FRAME:-1, EVALUE:5e-166, 13104.m04608 protein protein kinase domain containing protein, expressed
CDS Structure of MLOC_68842

CDS Structure of MLOC_68843

Contig Sequence (8060 bp)

>contig_55447 8060 assembly3_WGSMorex_rbca.fasta
TTGTCATCAATTACCAAAGCCACATATGGAGATATATGCTCTAACAACCACACATTTGAG
CATCTTGCACCATAAAGAATTCAGTTTTTTCTAAAAAAATATGCTGTTTTTTTTGTTTTA
CTGTTCACCAGGTTCGGATGAGCCCGTACACCGAATTAAATTGTTGCAACTTTATAGAAA
AATATATCAGCATTCATAATCTGAAAATCAATGTCATTAGATGCATTGTGAATTTAATTT
TGATATTCTATACCTTATGTTAATATTTTTGTATATAAAGATGACACACTTTATAAAGTT
TGATTTAAGACAAATCCTATATACACGGAATAAAAAGGACTGGAGCGAGTATTGTAAATT
ATGATGGCCATCCGACTGATATGAAGGAATGTACAATGATGACATATGTATACAGACGTC
CCATGATAAAAAGTAGTTTGAAACATCTATATTAATTTTTTTCCTCTTCAATGCAAGCTA
CAACTAATGGGCCTCGTCGAGGAAAAAAAAGGACTCTCGCACACATGCATCTCTATTTTT
CACTTTAATATTTTAGCTTTTTTGGATCAGATCACACTTTTTCTTCTCAAGCACCCGCCG
ACAGATTTTCGTGTTTTGACCTTTTACGAAAGTTGATCGAGATTTGACCATGATTTGTAA
TTTTTTTGTGATCTGACCCTTTTTCTACAGCCGGGGTCCATGACAATAGGGTATAACAGC
CTACCGCTGAGGTCCCTGGCAGTAGGAAACTTATCCATGTGAGGGCGACGCACCCCTACC
GCTAAATAGGCTGACGGTAGCCTGTACAACCCTACCGCCAAGGTGCCCAACAGTAAGTTG
GAATTTTTTTAGGTAGCACATGCACCTTTACCACCAGGGTCCTCGGCGATAGACTATTAT
ATCCTACCGTCATGGATACCGACGATAGGAACAGGACCAGATCCCGAATTTTGTACAAAC
TAGGATCAAACATCGATCAACTTTTATAAAATGATCAAAACACGAAATTTAACCACACCC
GTCTTCTAATAATCCCGTTACATCATGCAAAACCACATCCGCTTATAAGTGACATACGAG
ACATCAGTCATGTCCTGAGGACATGTACAACGCATAGCCTCGGGGTGATGCCTCTTACGC
CATGTATGATCGGATGTAAGGAAAAATAGATTCGAATGAGAAAGCATGATACTTTGCAGG
AGACGGGTGCTTGAAGAAAAAATGTGTGATCCGGTGTAAAAATTGAAAAGTTAAAGTGGA
AAGTAGAGATAAATGTGTATTAGTCTTTATTTTTCTATTTTTTAACTAGGCCCACTGATA
ATAAAAAGTCAATATAAATATCTCAAATTACTTTTTGTCATGGGTACGTGTATTCATATG
CGAGCCTTGTACATGCGCCGGCCCGTCGCAGTTCTGCAATTCTGCAAGGCTGAACTTGCT
GTCGGCAGCAGCGGTTAATTAACAGGCAGGAGACTTCGTCGGTCATCCGCGTCGTCGCGA
TTACTCCACCCCACCGACCACGGCCAGCCCAATCGGCGACCACCACGTGCAAACCCTTCC
TCCTCCTCCACCCCAGCAGTCCACCCACGGCGCACTACCCCTCGAGACAGCACACCTTCC
TCACCAGTCATCACCCAGATCCCAACAGCCAGTCGGATCCATCCCATCCCCGCTTCCCAA
CTCCACTGTTCTCGCCATGGAGGGCCTCATCAAGGGTCTGGCCAAAGCGGCGATCGGCGC
CCTGGAAGGCGGCGACGACCGGCGGGAGCGGGAGCGGGAGCGGGAGCGGGACGAAGACCG
CGAGGCGCCGAGGAGGCACCGCCCCGCGCGGGACGCCGAGGAGGATGAGGACGAGGAGGG
CCGCGAGCAGCGGGACCGCTCGACGTGGGCCGAGGTGCGCGCCGGCTGTTCCCTCAATTG
CGAGCGAAGCGGAAGCTTGGCGCGCAATGGCTGGTCGGCCTGGTAAAGTCTAACGGTTCT
GGTTCTGGCAGGTGGTCTCCGAGAAGAAGGGCGGCGAGCCCCAGGAGGAGCGCCGGGGTT
CTCGGCCCTCCAGGCGGGTGAGTGTCTTGTCCTGTTCAGTTCGTGCTTAGTTTGTGTGAT
CAGCAGGTGTTGATTTTTCGTGATTGCATTTCAGGAGGAGAGGAGGGAGGATGAGGGCTG
GGAGAGGAACCAGGGCCGGAAGCAGCATCCATCTTCGCATGGTGGATCTCACAGCCAGGT
TGTCCAGATGATCGGGGGTGCTTTCAGTTCCCATTTGATTTTCCATGTTGGTGTAGCTGA
TTTGGGCTTATTTTTGTAGCACCAAGGCGAGGGCAGGAGTGATGGTGGTAGCCGGCTACC
GCAGCAGCAGGCTCCAGCATACAGGCGACAGCAACGGGTTTGATTCTGCCCTGTCATGTT
AGAAATTCTTTACATCAAAATTGTGAGCAATTGACCTGCGCTTTCAGTCATATACCTTGT
AGTGTCTGTATTATAAATGTATATATCTTGGAGCTTTTCAGTATCAGTCTGGACTCTGAA
GTTGGGATGGATTTGTTAATAAGCCAAGTCTTTAATTTTCGGATTTTAGGAGGAGGAAGA
AGAAAAAAATGATGAAGGTTGGGAAACTGTAGGGGAGAAAAAGCACCATGGAAGACCACA
ACAGGTTTGTGTTTAGTAACCTAAATTAAAGTTAATAGTTGGTTGCAAATACCAGATGAG
TTTCTATGTGTTTTAGGTAATAATGTTTATAGGCCAATACTTTTCTCTGTATGTAAGCAG
TATCATGCAACAGACCGACACTGACATCAAACACCATTTCTCTACTCTTGACACGGTAAA
TGAAATAACTGAATTTCAGATAACATGATTTTCTGAAGGATGTTTCACATTGACTTTTTC
TTTCAGTGTTGCTATAGTTGAACCAATTAGTATTTGAAAGCACCATAGTTTATAATTTGA
GCCAACCAGTATGCAAAAAAAAAAGGGAAGAATTTACCATAGTTCAATACCTGGAAACTT
TATCTATTTGTGTGACTTTATGTTAACTGGTGGTTACCTTTTCCCTTATATATATATGAA
CTAACCTGTAGAATTCCTTCGGTAAGATGTCATGGTGATCCTATACTACAGTAGCAGTAT
ATTGTGAAGCTTCCTTCTCCTGTTTGAACTCTGAACTCCTAGATGACTGGTTGATACAGT
GTGAAGCATGGAACGGATACAAAAGGCCACCATCTGAACAAGAGTACTCTGAAGATGTTG
GTCAGATCCACCACGGCCTAAATGTAGAGCCTACCAGGGAAGAGCTCAACAGCTTGACAG
AAGCATGTAGCCGGCTGTGGGAGCTTGACATGAACCGTCTTGTTCCTGGCAAGGACTACA
GAATTGAATGTGGAGAGGGAAAGAAGGTTTATCAGAAGGATGATATGGCATCTGAAAACT
TGTTCAGCTGGCTAGGCGAGGATGTGCTTACCAAGCCCACCTACTCTCGCTTCTGTGCGC
TTCTTGACAATTACAACCCGCACCAAGGGTACAAAGAAGTTGTTACTCAGCAGGATAAGC
ACGAAGAAGCAGCATTTATTGAAGAGATTGCCCGGACAGCACCGATTAAGTACTTGCACC
GGTATTTAGTGCTGAAGGGAGTCGCATCCCAAGACTATGATGACTTCAAGGCAATGCTGA
CATCCCTTTGGTTTACTTTGTATGGAAGATGTGGTAACTCTAGCTGCTCTTCTGCATTTG
AGCATGTGTTTGTTGGTGAGATAAAGGAACAGAGACAAGGAGAGACCGAGGTCTCAGGAT
TCCATAACTGGATTCAGGTAAGTCCATGTAATGCTTCAGCAGTCTTGTATCCTTGATTCC
TTGTATGAAAATATACATCTGACTGCAACTACATGGCTAATTTGCAGTTTTATCTGGAAG
AAGCCAAGGGAAATGTCGACTACCAAGGTTACATATTCCCAAGACGGCGTGGGGAATCAG
TGAGTATATAGTCTCAACATTCGTAAGATGTACATGTATATAATGCATCTAACATGTTCC
ATTCTCGTTTTCCCAGCCTGATTCGGAGACACAATTACTGACCGTGCAATTTGAGTGGCA
TGGTGTGCTGAAATCAGTATCAAGCTCTTTGATTGGTGTTAGCCCTGAGTTCGAGCTGGC
ACTCTACACACTGTGCTTCTTTATGGGAGGGGAGGATAACCGTGTCGATATTGGCCCGTA
CACAGTGAACGTCAAGTGCTACCGTATGGGTAACAACAAGATTGGGTCAGTCTTTCCCAT
TGCAGAGAACTGATTTGTGTGATGAGTGATGACTCACGACCTGCTTCTGCAGGTTTGTAA
TTCTTCGGTTTTTATCTTTTCCCTTCACTTCGTGAGATTTACACTGTTGGTTATGAAAAA
AAACCATTGTTCAGTCTGTTGTCACAATGCCACTACTTAAAACGTACCATATTACAAGTA
TACAGCACCAAAGTGGACGCTGATGCTGACTGAGATGAGAATTAACTTTCTGTATCATGT
GTTTGTAGAAAACATAGAATAGAATGTTTCTTGTGGTTTTAGCAAGTTTATTCTAAGTCA
GTTTTTGGAAATATAGTTAATCAGTTGAGGGTCTAGTAGACTAGTCAGAAGCGAGTACAA
AGGGGCATGGATCAAAATAGGGTGGGAAATGCTGTCACTAATCATTATAGATAACCTAGC
AAAGAACAACCTTCCTGGCCTTTACAGCTCTGGTGCCGACCTGCCCGCTTCAGCCCCCCG
TCCTCTGTTCTTCCTGTTGTTTGATTTTCACCTGAGAAAATTGCTAATGTTCCGTTGTTC
TGAAGCCATAGAGGAATCACCAACCTCTTTTTATCTGTATACTTGTTGTTGCTTGCTATA
GTGTGCTTCCTTTGCCAACAAAAGTAATAAAATAGTGTGCTTCCAGTATTCCAAAAACTA
CATATCCAAATGAAATAGTAGGCACCATTTCCATGTATACAAATTGCTGGCTCACGTGAG
TCCGACAACAGAAAGGCATAATTGCACTCATGCTTTTCAACCTATTTTTACCACCACCAG
GCCTTAAAACTTTACTCATCAATCACTAGATATGGCACTGGAGAAAACTAAATTTCTAAA
CCATATATACAGTTATTATACATAAAAAGCAGAACAACAAGAAGAAAAAATCCGTCAAAA
TCAAGAGCCTCAACGATGGCAGGGTATCACGTCCGAGGAGCAGCTGCCCTCATGAGCATC
AATCTTCTCCTTGCATGAGCATTTGCATTCTCACCTAGAGCAGCCAAATGAAGCATCCGC
CGTCTTGCCGAAACCGCAGCCTCATCCTCCATGGGTGGTGTCGTTGGTGCCTGATGAAGA
AACGAACTTTCCTCCACTGAGCAGGCATGATGACCATCCAGTTCCTTGTGCTGCATTGCC
AGCTTCAGCCTCTCAACCACCTCCACCATGGTGGGGCGGTCCTTTGCATACTTTGCAAGG
CAGCTGTTGGCCAGTTTGGCAATCTCTCTTGCTCCTCTCATGGAGTACCTCCCGTCAAGC
CTTGTGTCCATGATCTCGCGGAACTGTTCGGTGTCGGCTGGGTGCCGCCTCACCCACTCC
AGGAGCTTCTGCTCGTTCTTGGGGCGTTTTTTCTCCACCGAGCGTCGAGCCGTGAGGATT
TCATACATTACCACTCCGAAGCTCCAGACGTCGCTCTTTGTGGTGAGATGCCCTGTCTGG
ACATAGTCTGGAGCTGCATAGCCGTAGGTTCCCATGACCTGAATTTACAAAGTTAATTCG
CCTGCTCTGAGGACTGTACATATGGAGCATTCAGAATGCCATGTGGCTATGCAACCCAAG
GAAATTGAGCCAGTCACTATAGTTAAGTTTGCACATACCGCTGTAGACACATGAGTTTGA
CCTTCTGACGGGCCCTCCCTTGCTAATCCAAAGTCCGACAGTTTGGGTCTGAACTCCTCA
TCCAACAGTATGTTTGCAGCCTTGAAATCGCGGTATATAATCTACAGATATCAAAAGATC
ATCATGAGCATAATAGTTCAGGTTGTGGTGACAATTGGACATTCTGCCTTTCCCATGCGA
TAGTTCCTAATTCAGTTCTCATGCCATGATCTGAAGAGATCTGCTGGTGTAAATAGCTGT
CTGCCTATTCTTGCTCAGACTTCATTCGCTGACCAAAATTATATTTATCCAAGCTCAAAG
GGATGGGCAGTGTCCAAGGCAGACTGGTTACCTACCTGAAGCTCAAGGCCCTCATGGAGA
TAGAGCAGCCCTTCAGCAGCACCCAGTGCTACCTGCAACCTGACTTCCCATGGGAGTACA
GGGTGCTCTGGGTTGAACAGGTGGTCGTCCAGCGTCTTGTTCGGCATGAACTCATAGACC
AGAAGCCTCTGCGGCCCTTGATCGGTCTGTGTTGCGCAGTAGCCGACGAGCTTGACAAGG
TTCGGGTGCTCGACGATGCCGAGGAATTGTACCTCGGCCAGCCATTCCTTGTGTCCCTGA
ACAGGAGAGCCAGGTGATCAGATCAGATCAGATCAGAATGGTGGAGTCTGGAGACAGGCG
AATTCTTCAATGATGAAATTGCAATGAAGTTTGCAGGACTGAGATCGATCGGTACCTGGC
CGCCGTTGGGGTTGAGCCTCTTGACGGCGACCGCGGTGCCGTGGGGATTCCCGCCGGGGA
GGCGGAGGGCGCCCCTGTAGACGCACCCGAAGCCACCCACGCCGACCATGAGCAGCGGGC
TGAAGTCGGCCGTGGCGGCACGGAGCTCGCGGAGGCTGAGCTCCAGCAGGCTGTGCGCGC
CCCTCTCCCCGTACAGCTCCGGGATGCTCCGGGCGGAGGAGCCCAATGACTTGCTCGACG
CCGGCCGCGCGCCCGAGCTGTCGGACGTGCTCGTAGCAGTAGCGCTGCAGGCTGGCGACG
CGGCCGAGGCGCCGGCGGCTGGTACGGACGCGTGGTGGGAGCTCGGCCCCGTGCATGCGG
CGTAGGAGGAGGCAGCGGCTGCCTGTGATGGCGGCGCCGAGGACTCCGGCCGCCTCTTGC
GCCTCCATTTGTCCCGGCATAGGCATAGGCAGCCCATTTCTTGGAGGAAGCTGGCGAAAT
TGAGGACGATCGTAGTGGTTTGTTGCCTACCCCGAATCACAAAGAGAAACACCAAGGCTT
GGCGATAAAAGAAAGGAGCTTTGTCGTCTCCTAGTTCTTACGCTTCTCGTAGCATCTCTG
AAAACAACACAACCGACGGACCAATCGATCAATCAAGAAGTTAAGTTTCTGACAGCTAGA
AGGTCCGGAGACGAGAAAGCAAAAGCCCGACAGATGGAAGAAACCCCAAAAGAAAAGAAA
AAAAACTGAATCGGAAAAGCTTCAAGAAATGCCTCCAACTGGCTGAATTTCGTTATGCAC
CAACAAATCAAGAGCTGTAAGCCTGTAACACATCCAAGCAAAATGTGAACTACTCCGACG
TCGCTATTATATGTCTTAGCTAGCGCGCCTATCGAGCAGCACAGTGGCACACAGTCACGC
GGTTTCGCAAGTCGCGGATGGAGCGTTCAAACTATACGGCCGTCATCATGGGTACATGCA
GTGATCGAGGACGACGAAAAGCGCAGAGCTTCCTTCCCTCTCTCTCCGTAGCGTAGCGAT
ATGTACCAGCGGTTCGCCACTTCTTCTCACGTACAGTTCGTTCACGTCACATGCAACTTG
TCCCGGCTGTCAAGGAAGGCAAGAAATGTTGACCACTGGGTAATCCTTCTGCAATTTGAC
CTAGGCCCGTCGATGTCCACCACGCTTGGTGAGCTATTCGCGCGCTGAATTTGCCTTCCA
AGTCTTGACCTTGCATGCATGTGATGGCTGATGGCTCTGTTAGGTAGAAAAACACGCGAG
ACTCTACAACAGAGGTTTTTCTTTTGAAACGCGGTCCCTTAGATACCGATCTTATTAAAA
AAGGTCGAAGAGAGTTGTCCGGTAATCGGAAAACCGGACTAAAACTGTCACAATGCGCCC
GCCACGACAAGGTACACAGGACGACCTGACAACCTACACAAGAACGCACACACGCCGCCT
AGGGGAAGAGCTCCGTCGAG