morexGenes - Barley RNA-seq Database

Contig contig_55398
Source Contig contig_55398
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55398 (7433 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_55398

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68823	3	1642 bp	MLOC_68823.1	Available	Available	LOC_Os03g11370.1, FRAME:-3, EVALUE:9e-60, 13103.m01281 protein B3 DNA binding domain containing protein, expressed
MLOC_68824	2	634 bp	MLOC_68824.2	Available	Available	LOC_Os05g34770.1, FRAME:-2, EVALUE:2e-69, 13105.m03622 protein cytochrome c, putative, expressed
CDS Structure of MLOC_68823

CDS Structure of MLOC_68824

Contig Sequence (7433 bp)

>contig_55398 7433 assembly3_WGSMorex_rbca.fasta
AATAGAAGACCTGTGAAATTTTAAACTGCATTTTTATAGGATAAGACCATCTTTATTTGT
ATCGTAAATACAAATTCTTAAATTATAGACCATTTTTTATAAATTAAGAGTGTGTGGTAT
TTCTTTCTTCCGTTGCAACGCATGGGTCCTTTTGCTAGTACTAAATAATAAAGAGAAGCA
GTTCATTCATCGAACATCCCAGTGGTTCATACAAATACAATCCATTCCTCAGCTTATTTG
CCATCACACCAAGGCACACACACGAACCAGTAGTCGATCACTGGACGGTGGTGCCGTCCA
TCTTGCGCACCTCGACGCTCAGCACCGGGTCGTCGCCGCCGGCGGCCTCCTGCACCAGCT
GGAAGAAGCAGATGTCGCCGACGCGGAGGCCGTTGTCGACGCGGAACTGGTTCCACCCGT
ACTTCAACGCCGTGCGGGTCCTCGCGTTGGCCTTCCGCCGGTTGCTGTGCTTGAGGCAGA
CGGTCCACTGCTGCCCGCGCATCCGCAGCACCACCCTGCTCTTCTCCGTGAACCCGTGTG
CCTCGCTGAACTCCACAGGCACGTTCTGCTCAATCGCCAAAATGTTAGTAGAAAGTAGTA
GAAACCAAAGACTCGAGGGAGGGGCGGGAGGCGCAGGTTTACAGCCACAGCTCACCAGGT
ACTGCTTCTTCTTTGTGCCCAGGTGGCACTGTCCCAGCGTCACGATGAACCTAGCGCCGC
CGCCGCCGCCGCCGCCTTCAATGCCGTCGTCGCTGCTGCTTCCGCTCCCGGGCAACGCCG
GTGGCGGAGACTCCTCCTCCTCCTCTGTTTAACGCACCCGCACACTGTCAATTCCAGGAT
GAGTATATATACTGCAAGGGAATATACAAGGGAACGTACGTACCGGCGCTGCCATCCTCC
TCCGCCCGCTGGCAGCAGTGTCTCCCGCACTCGGTGTCCTCGAACACCGTGACGGTGAGC
AGGGCGGCGCCGTTGTAGCGGAAGACGAGGAGCTGCCCGACCTCTATACCGTTGGCGCGG
ACAAACTCCTTCCAGCCCCCGCCGAGGTGCATGTCGCCGTACTCGTTGACGACGAGCTCC
ACGTCCCACGCGCGCGCCCCTCCGCCCTCGACCCGCAGCTTCACCTCCCGGAGCGCACGG
CCGTTGAGCTCGCTCGCGAACTTGGCAGGCAGCACCTGCAGCTCGGAGCAGACAGGCGGC
AAGAAACAGTAAGCAAGCAGGGAGATGAGTGTGTGAGAGAGATAGAGACGAGCCCGTGCT
CGGTGAACCAGCTAGCAGAGCATGCGCGACCAGGTACCAGCTTCTCCCAGGACATTCCGG
AGGCCATGAGCTTGTAGAACTGGAAACCAGCCAGGTTCGGGCTCTCCTGCAGCTGCCGCG
CCATCTCCGCCGTCTCCGCGTCTCTGCTTGGAAAATAATTAGACCGACGAAACAGCCATG
AACGGAGATGATCGAAACGTTAGAGTAAGCAGATCGAATTCCGGTTGCCGCACCGCGCCT
ACCTGCGACTGCGAGAGCGCAGAATCACCATGGAGCACGTACGGACGAGGGCAGCGGCTG
GCGTCACAGTCTCACTGACGGGAGGAGGAGGAGGAGGCTGCGGATCTTGTTGTGTTGGAG
TGGGATGGGAGGAGGAGGAGACGATCTCTTGTAAAACGTTGCGCAGCACCAACACATGCA
CCCATCACGTACGTCTCATCTGCCACTTCTTAGCAAGAAGCGGCACACAGGACACACACA
CTTTGCTGGCAGCAAACACCAAAGGGGCGTCAAGCTGCGCGGCGTGTGTGCCGTAGCCTT
TGGAGCTCACATGGCTCTATGCATGCTCGGTTGTATCGTGTGCGGGCCAAGCGCTTGGTG
GTTTCTCATCTTTCAATGCATGCATACGAGCGTCCTGACGCCTACAGCGCTACTCTTCCC
CGTGCATGTTTCGTGGTGTACGTACGTACCACTGATCTAAGGCTGCTTGACGAGAAATTA
ATTGTAGTATTTGATTTGTAAGAATCTATTTATGGGTCATCATTTTCTCTACGCAGGTCC
AACCAGAACTGAAGAAGAAACAGGTTAAGATGCTGGTAAATGACCAACGCCTCACTGCCC
TGGAGGGATAAGGGTACACTACCACCTTTGATTCGCAGCCTCTTCCTCCCGTAATAACAA
GCTAATAAAACGCTGGAAGGCTTCTCTGTGCTTTGAGCAAAACAGGGCTGCTGTATCAAA
GGTAACATACTATTGATAGTTTGTTCCTGATGCAGTTCTTGTACTGTTACTTGCACATTT
ATCTGAAATGCCCTCATTCTACAACTGCAGGTGGAAGATGCATCCAAGTACCTTCCGTAG
CCATCTAGTCATGGTCAGACTGCCACTGCCTTAAGCTTTCAGCCTCAAAGGGCAATGGTG
GTAATTGTGGGAAGGAAAACAAGCTCATGGTGATGGCTGTGGTTTTCTGCCCAATGTCAC
GGGGGAAGACGATGGTGAGCTGTTGCAATATTTCGCTAGTTTCCTTTCCCTGCACTCTGC
ACTCACATGGCTGATGGGGTGGCTATGGCTGAATCTTACACCAAAATTGCAAACTTCAGA
CCAGGGAACGTATTAACACCACATCACTGCCCCCGCTTGCCACTGTCCGGTTCTGCAGGG
CCTTAAATTTACCCCATCCACCATGTACCGTTTCATTGTGTGACTTGGTGTTCGTTCGTG
GTACTCAACCCATAGGTATCTTTAGGGTATTCGCGTATTCCATGACAACGAAAAAAGTAG
AGTATGCGGCGCACAAGATACTTGAGGAGGTCTACTGCCCAACCAAATGCACAAACAGGT
GATCATCAATAACAACAACAACAACAANAACAACAACAACAACAACAACAGGTTCATAAC
AGACCTGAGAAACGGCCATTATAGCAGTGCATTTTGCTGAAGGAAAGAAACCATCGTAAG
GAGAAATGCTACCAAAATCTCTAACCGTCTTGGTGATGCACCCCGTCAAACCAGAGTGAC
ACCATGGCAATGTCTATTTTTATTAACTTCAGGAACGTGGCAGCAGAGCAAAAGCCCTTT
CAAGCTGTGGCACTCTTCAGGTATGCGATGAGATCAGCACGCTCCTGAGGCTTCTTCAGT
CCAGGGAACACCATCTTAGTTCCAGGGATGTACTGCACATAAGAGAACAGCAATTGGAAT
GTTATCAGGATATCACATACAAAACCAACGAATGTCACTCTACAAGTTTAAGAAACAATC
ATGGCTAACATATCCAGCACATTAACGAGTAAGGTTCGAGAGGCAGTTTTAAGAGTAGAA
AATACCAGGGAATCCTGGTGATTCCCCCAAGTAAAGCTCCTATTAGAAATCTCAAATTTC
AATAGGCCATGCTTATTAATCCAATCATTACATAAGAAGGCCTAGTGAGAATTAAAGTTA
CCAGTGTTCTTATCTTGAGAAAATCTAATGAGGTTAAAAGTCACCACCCGCAAGGGTAGG
ACTATAACCAGATGCATGGCATCCTCTGAGATAAAATCAAGTTTATACAGTTCATTATTT
AACAGAATGCATTTTTGGCTCTTAGTAAAAAGCGTAAACATTGTCCCTGCTAATATGAAC
AGAATGAATGATAGGAAACAATAGACAGTTCTAACGAAACAAACATCTCTATGTAGAGAA
CAAGGAGTTTCAGCTACATATAACTATAACCCGGATAAACGGAGATATCAAATAATTAGG
TAAATTCAAGAACAACTAGATTAAAATAGAAGAGCACAAAATGAAGAAATGTGCCATCAA
TGTAGAACGACCTCGAGAATAGCAACTATCAACAATTTAGCTCAAAAGAACTTCCAAGAC
ACTGAACTCACAACAATTCCTCAAAAAAAAAAAAAACCACTCTCTAACAGGGTATCTGAT
TACAAGTGCACAGCACAAGGCAGCAGCTTTCACATACCCACAGGCCACTGATGACAAAAA
ATAGAAGTAGACATTAACCATACCTTCTTCGGGTTAAGCAGGTAGTCGTAGAGTGTTTTC
TCCTCCCAAACCACAGCCATGGTCTTGTTAGCCGTAGAGTAAGAGTATCCAGGAGTTGTT
CCAGACTGCCTCCCAAACAGACCATTCAGGTTAGGCCCTGCATAAGATCAGCATGACTGG
CATTACTAACAACACATGTTGGGATTTGGTTAAACAAAATCTGGCTTTGTAAAGAGGCGA
CAAGTGGTGAACGAATTCAGTTCCAACAATGTATCGTCAGTTCAAAACTACTCCATCTGT
TCCTAAATATAGGTCTTGATGAATAATCAATAAAATGGCCGCATGCATCACCGAGATGCA
GAGGCCGGGGGTAATCCTTCTTTTCTAAAGAAAAATGTACCCTGCAGATATTACTAGAGA
TGTTTTCTCAGAAAATTACACAAAACTGAAAGCCTGCAGAAGACTACAAACAAATAAACA
TTGAATACATGTATGTAAACACTCTTATTTCTCCATAATGAATTGACAGTGCTCCTGCTT
GTTTGTCAAAAAGAAACATAAATTTCTCAAAAAAACAACATAAATACATGCCAAACTATT
GGCAAGGCTGGTCACTGAATTATAACACCGAACACACATACATGCAGTGCCGTGTCATGA
GTAACACCGCTAAGACATTGCGTCTTTTTGAATTGTTCATTTCAAGTGGTTTTTTCAGAT
CACTTGCTATCTGTAGAAAATTATCATGGTCATTAAATCTAATGCGTCTTAGCATCTACG
TTGAAACAAAGGCACGCCATCCGTCAAATCACGGGTCGAACAACATAGCCCACAGACGGA
TTCACCCATTTCATGAATCAACCAACACTCGTCCGGGACCGCGTTCTGATGCAGAGGCCC
GGGGATAACCCCCTTTTCGAAGAAAAAAAAACCCGCACTCCAGCTGACCGAACAACCGGG
ATCCAAACGCGAGCAATACGCAGGGTTTACGATCAATCGATGTGATTTATCCCTCCCAGT
TTCCTGGTCCCAAGTTGAACCCGAACACAACCCAAACCCCCACGAAACAGGGGCTCGCGT
CAGGGCAGAACACCGCCGACGCCAATCGCAAAACCGATCCCGAAATGGGACTCCACGACA
CGAACGATACCGCGCTACACGAACGAGGCGCGATCGACGTCAGCGGGGCCACTCACCTTG
CTTGTGGCCGGCGCCCTTGTCGACGGTGTGGCACTGGGCGCACTTGGTCTTGAAGATCTT
CTCGCCGGACGCGGGGTTCCCCGGGGGCGCCTCCGAGAACGACGCCATCGCCGCCGCCGA
TGATCCCGCGCGAACGGTTGCCGGACTAGAGGCTAGGGTTAGGTGCTCCCTCGGCTGGAG
GTGGCTGGGGGCGGCGGGGAATGGTGATCGGGCTCGTTCTGTCTCTGCCTGTTTTAAAGC
GGTGCCACGAGATTACGAGAGACGTCGAGCCGTTGAGGCCGAGGGGCTGCGAAAGTTACC
ATGCTGCCCCTGAGACTTCCACTATGGCTGTGGTGGAGCTTGGCCTATATTGTTCGAAGG
GGCGCAGTTGGCGGGGGCGACCAAAACCTGATTTTGCCTCATATTTGGCCCATGTTCTCA
AGGGGTACTGTCTTGGGCAGGGCCACACTATAGGGAGCAACTAGCTAGCCAGCGATCGCT
CCCGCACATCGCCACTTGAGGCGTTTTCAGTCGCCGCCACGTATCGCGCTATGAGCGTTT
TCTTTGAATTTTGTTGTTTTTTATTTTTTTGCACGCGTTTTCGTTTTTTTGAGTGGTTTT
TTTTGATTTTTTTTAGTGTTATGTTTTTTACCATCTTTTTTAACTTTTGGACGAAAAAAA
TTTACTTTTTAATAAAAAAACGCGTTTTTTTCATGCGAAAATCTGGTTTTTTGAGAGGCG
GTTTTGCTTCGGCAAGAGGTACAGTTTTGCTTTCGTGATAGGCACGGCCGTGCCTCTTGG
AAAGGAAACAAATGTGTTTTCATTTTTTTGCGAGAGGCACGATTTTGCATTTACGAAAGA
CACGATTTTACCTTCGCGAAAGGCATGTCCTTGCCTTTTGGAAAGAAAAACAAAACACAT
TTTCTGTTTTTTTACGAGGGGCACGATTTTTGCTTCTACAAAAGACACGGTTTTGCCTTT
GCGAGAGGCGCCCGTGCCTCTCCCGAAAAAGGGGAAAAACGCGTTTTCTGCTCTCTTTTT
TTCCGCGAGAGGCACGGTTTTGCTTTCACGAGAGGCACTGTTTTGCCTTCCGACCAGTGC
CTCTCGGAAAGGAAAAAAACGCGTCTTTTAATTATTTTTTTCTATCGCGTGAGGCATGGT
TTTTTTTCTTCCGATTTTTTTTATGAAATAAAAGTTCGTCAGAACCTGTCAACATGAGAT
CCGGTTTTGAAGATCTCAACGCGAGAAAGCCAACAGTGTAAACAGTACGAGATTTGAACG
CATGGTTTAGGAGATAAAACGTTTTAAAAATACGGATCTACCAAAAAAAAGGAAAACTCA
TAGGTTGCGACAAGTGACATGCATGCAGTGCGCCACTTGTCGCAACCTGGAAGGTGGGGA
TAATCGTTGGAAGGTGTATTCGCTAACTAGTGATTTCACACACTATACCGACGATCTTCT
GGCCGACAGAGCGGCCTTATTGGACAGGCCCATTATTATAGTTACTCGTGAGTTTTCTTT
TCGTGTTTTTATTATCGACTACCACAAGGGCTCGTGCGTTGCAACGAGATCTTAAAATTA
TATACATTCAAATTAATCCATCATAAACATAATATCTCAATGAATATATAAAATATTAAT
CCAAATCAAATAAAACTGGTGGCATGCTGCACTTAAGAAATAGCCATGCTAATATTACAC
ATTTAGTAATTGACTGCACACAAGCTTAGATGCCACAATTTATCATGAAACAAAGCATCA
CCACTAAACTTTAGAGCCATGAAAGAATCATATTTTAAGTTAATTAATGTTGATACCACT
ACTCATATCCAAATAATAAACTAATCAGCTTTAGCCCAAAAAGTGATATTCGAACCAATC
ACAAAGCAAAATCAAATATAGATGTTTCTTGGCATGCAGAGTATATTGCAAGAAATTAAC
GTGTATTACTGGTAAAAAAAACAGTAGTTCACTCAATCAAATGTTTGCCACTACTTTTCA
TCAGTTTTCATCAATCAACACTATATCATACAAACCCGACATCAAAAAATAATTGAAATA
TGCTTCACTGTCTTGTACAAACTTCCTAATAATAGAATAGAACAAAATTGGACAAGAAAG
AAGGATGTATTTACTTAACTTAATGTAACATCTTCTGTAGAGTAGATGATGTGGAAAACA
AGAAGAACTTGAAGAAAATACTTCAAGTAAGATGCAAGTAACAGCAAAAAATAATTCATA
ACCTCTAAAAGGACATGGATGTCACATAAGGGGGGGGGGTAGGCGCTTTAAAA