Map Locations of contig_55376 (8495 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_55376

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68805 2 266 bp MLOC_68805.2 Available Available None
MLOC_68804 1 354 bp MLOC_68804.1 Available Available None





CDS Structure of MLOC_68805






CDS Structure of MLOC_68804






Contig Sequence (8495 bp)

>contig_55376 8495 assembly3_WGSMorex_rbca.fasta
CCATGCAACGTTCCCCAACAATCTGGTGCCTCAAAAGGGTCATTTATTAAACTTGTTCTT
TAATAAGACATAAATTACTTTCATTGTTGCTTGTAGTTTGCGTGTTGGGTCACCTGATCC
CTGCCTATAATAATTGTGCTATATTTTGGTCAATAGAGCCTTTGAATATTTGTTTTGAGT
CATAGAGTTTGTGTGTGATGCATGTTGTTTCACAGCATGGCGTGCATGATGAATGTATGA
TTATAAAGTGCATGTCGTGTGTGGGGTTCGACTTATTAGCTGTTAACCCACTAACAATCT
CTCTTATAAAGGAATGTCTGAGTGTGTTCTCGAAGCTTGTGAATTTATCACACCCGTCAC
GTGCTGACGCTTCGACACAAAACACAATATTTGAGCGACACACATTGCAACTGCATTTCG
TGAAGCATTATACAATTGGGCCGTTCGAGTTATATGACTAAAAATGTCGACCTCAGAATT
TTGTTGTGTGATTACTATCAGTGATCGAGTATAGTCCCAAGATAATATTAATGGACCAAC
ACAAATAAGATGGCATATGTTGCTCCGGCGTGAGTCTTGTACTCTTATATGACCCACTAT
AACTAGAATTATTGTTGTTTTTTTGGACATGGTACACACACAAACACTCATATATACGAG
CATACACTCATTCTATGAACTCACACACACCCCTTACCCCTATGAGCACCTTTGAAAAAT
TGAGCTGTCATATCGTCTTGAGATTACTAAGTTACCGTAGGCGGCTCGTTGATGGAAACA
TAACTAGAAGTAATGTTTATACCCAGGACAATATGTTTTTTTCGGAGGTGATTTTTTTTC
ATAAGAACCCGGTACAATAGTTAAGTAAGGATTTTGTTTTCGGGATAAAAAAATTGTAAA
GCTTATTGGATCGGCCCATATAGCAGCCTTGTGTGGTGTAGGTAGTAGAATTTATCGATT
CGGGCCATCCCAAGCTTTCTCATCAAAATCTTCCTTTGCGGCTCCTCTCCATCCGTCGCC
TCCCATCATCGCCGCCCCTCCGACATCGCCGTCCTCGACTCCTACTCCGGTAATAACACA
TCGTCTTCTTCCCTCCCGTTAAAACAAAACAAAACACACACACACATCGTCTTCCTCCCA
GATCCGATTTCACCAGAAATTAACCTAATCCCCTGTAATCGACCCGTCTTTACCAAATTC
GTTTCATTGGAAGCTAATCGTCCTCGGTTTCTGCAGTTGGAAGCGGGATAGTTCTTGGGT
CATCGGAAGCGTCACGCATGTGAGTAATCCGATCCAACCGATTATATTGCCGTATTATCT
CGCTGATCTGTAGCGCAGGCGTCGCGCGTGGGCTGAGCAGGTCGCTGCATTGGGGTGGGT
GGGGATCCGTATGCTGCTGATCGTGTGATTCTGTTGCCGTGCTCGAATTAAACATTGATT
GTAGGACATTTAGATTTGCGAATGTCTGCCTATGTTCAGTCTGTTCTGGGGCACGATGCT
TGTTACGATTTTGTTGCAATTCAACCGCTGATGGATAGGCGTCCGTACTCAGGCATCAGT
TCATATGGCCAGCCTTTATTGTCAGAATCTGAAAGATAAGGCCTGGAGCAATCAAACAAG
TGAGTGGTTGAGGTCCATTGCTGCTTGTTTAATCAGGGCCGGTTGTGACATGTTGGCCCT
AGGGCAAGACATCGATGAGGGTAAGATATTTTTTTTTCGAAATAAAGGTTCTTTTCTTGT
GGGGAACGATGCACAATTTTTTTGGAATCCAGAGAATTTCGCAAAAAAATAGTACAAGAG
AAAATGCAGATCACATTACAGCGAAACCTAATGATACACGAGCTCAAAAGATTTTTTTTT
CTGTGGGATTACAAAAATATCATTTAGTCGCAACAAATAGGCACATAATGTATGAATGCG
TCGTTACCCGACAAAGCCATGCACCTAGTAGGCTAGTACAAATTAATAATCATGAGCTAG
TATTAGTAGTATGTAATGGAGTAAATAACCAAATAAATAAGTAGTACAACCAGGTATGCA
ATGATCACCTATATACAAGAGTTTCTGAGGTTGTTTGCACATAATAGCTAGGCAGATGTG
CCATCGTGATGCATCAAGATGGGGCCCCTCCGTACCTGGGGCCCTGGCTGGTCAACCCTT
TCGCCATGCCTCAGAGCCGGGCCTGTGTTTAACTGATTTCTGATGTTCGTATTTATGTGA
TTGTTCTCTGCCGTAGGCATCAAGCTGTGCAGGTTCTAGCTGTACTGCACTTGTCTCAGA
TTCTTGTGTTAGCGTGTGTTGAGGTGCACTCGAGGGTTACTTATGCAAATTTCTTCCCAA
AACTTAGTTTGTGGAAGAAAGCCTGCGCATATACGAAGCGATAGCATCCTCTTCAACAAC
TGAAGTTTAGGTGTTTTTCTCACTTGATGTGTCATAGACATAGTTAAGATGAAAGTTGGT
TATTGGCTGGTTCTAATGTCCGTGACCTTCCTCATTCCGCGCAAGTATGTGAGCCACTAT
AAGTATAACCAATATTGATAAATGAATCGACGTTAAACATTTTCATTTTGTATCTTTGGT
GGGGGAGGTTGACAAGGCGTGCAGACCAGGCTTTTTTGGGGAGCAAAAGACAGTAGACAG
GGCCCCCACCGTTGCTCTGATTTTCATTAAAATATGGAACTGTGCAAACAGAAGTAGAGG
GGGTCAGAAGGAGTTAGAGAGAAAAAGAAATAAATTACAATAAATCGAACCAGGTGAAGT
TTGTCTTGGTTAGCATTTTTCTAGTGTTGAGCCTGTTCTGTATGAGCAGCCAGAAGATAA
ACTTCTGTTTTGACAAGCAGTATGATTGCCATATCCATTTGAATGATGCATAGGCAGGGG
GAGGATTGCCAATAAGCTCAATAAATATTCTCGTAGTTGAATATTTAGTGCCATCCCATA
CAAACTTTCACTGATCTATGTCCTCAGTAGCATCCAGAGTAATAACCAATTCTTGGCATT
GTTGCACATCAATACTATACATGGGCAGGGAAATATTCCATGGCCTGAACAGATATGTCT
TTGTGCTTGGCAAATGAATCGCCACGTGGATACAATGTATGTAGTTTGGTATCCATTCAT
CATAGCACAAAAGAGTAGTAATACCATTCTTAACATTAATACGGAGTATTAGTCATCTTT
TTGCGGTGATAGTGCCTGTTCCTACTGCGGTGAACCAAAGTCCAATTTTGGCCACCAGAT
CCCCAAAGATGGAAATGGCACTTAAACATATTGCAATATAGAGCTTTTTCTTGACAATAA
AGTATCCCACTGCCTTGGAATGAACCGAGAAACGGTAGACAGACCCCTTGATATGGATAA
CATTGAATGGATCATAAGAGACTACTAAACAAGCCGAGAGAGCCAAACTAACATTGTGTT
CATCCAACAGAAAGCATGACCGTGCAAAAAGTGGCCACAAGATGGAAGGGGTGGGAAGGG
GGTGGGGGTGGGGTTGCACCGGAGTAGAGAAAAGTTCACAAACCTTGTCCTGGATCATAT
GCCTCGGGGAGACCCAGGGAGTGGGCATTGGAGGGGGGATCTCCATAGTGATCCATTGAT
GTAGATACCTAGATCAATCTTCAGTGGAGAACTCATGGGTGGAGGTAGTGCAGACCAGCT
AGGGACTGTAGATTGTGGTCCAATGTATGAGAATATATTGCTGTTGAGTTCTGTTGAGGT
GTCTGTATTAAAAGAAGTTCCTGGTAATTTCACTTTGGAACGTGTAGTGTTTCTATTGAA
CTGGGAGGTACTCACCTCCAGCCTCTCCTTCTATGGCACTGGCGGCTGGGTTGTGGTTTG
TGACTTACGCTCACACTCACTCGAGCAGCCCCTCTCCTCTCTTTTAGGTTTGCACATAGG
CTGGGCCTTATGGGCTAAGTGGAGATGGGCCAGACCCATACCGGTTCAACGTCCCCCCTC
AAGATGGGTGGTAGATTGCTATCAACCCCATCTTGTTACATGCCAAGTTACAATCCTTGG
TTCGCAGTCCCTTTGTCAAGCAATTTACAATCCTCCCCAGAGCTGACATGAGTAAGGTTG
ATGCATCATCAAGTTTCTCCTTAATGAAGAAACCAATCAATTTCCACATGTTTTGTCCTA
TCGTGTCGAACTGGGTTATTGGCAATGCTTATGGTTATGGGCAGTGCTTATGGCTAATTG
GTAGTCACACCATCTCAAGGGTTCCTTCCTCAAATGTTTCAACTCGCCCAGTAGGTTCTT
CACACAGATCATCTCACTCAACCTTTTAGATAATGCTCTATATACCCAGTTTCTGCCGTT
GATCTAGGCACAATGGTCCGTTTCTTGCTTCTCCTTGACACCAAATTTCTCCCCACAAAC
ACATAATTGCCTGAAGTTGATCTTCTACCATCTTGACAACTCGCCCGATCAGAGTCACTA
TAGCCATCCACCTCAAGATTTCTAGTCTTCACAAACACAACCCTTTTCTCACGGTGCCAT
TAGGAATCTGTGTACTATATCAAGATGCCCACTGCTTGGTTCATGCATGTATCTGCTCAC
CACACCCATGACATAAGCAATGTCAGGCCTGGCATTACACAAGTACAATAACCTCCCAAC
CAGTCACTGATAATCTACCTTTTCACTAGCTCACCTAATTGTGCTGTCACTTGATGATTT
TGTTCAATCGGAGTAGGGGATGCATGACATCCTATCATGCCCACGTCATTCAAGAGATGC
AAGGTGTATTTTCGTGGCACAAGGATATTCTCTTCTTTGTCCGGGCCACTTATGCCAAGG
AAGTAGTTTAGGTTGCCCAAATCCTTTACCTCAAATTCCTTGCCCAGACATCCCTTCAAT
GTCCCTATTTCCTCCTTATCATCTCCAGTGATGATAATATCATCCACATAAACTGCAAGA
ATGGCGATCTTTTGATCAGAATGTCTGTAGAACACCATGTGGTCATCGTTACATTGACCA
TATCCCATACCATAAACAACACGTCTGGACCTATCAAACCATGCCTTCAGAGATTGCTTC
AGTCCATACAAGGATTTCTTTAGCCTGCATACCTTCCCCGTGGTCTCTGAAGAATCAAAA
CCTGGTGGCATCTCCATGTACACTTCTTCCAGCTCATCGTGTAAGAAGGCATTCTTGACA
TCTAATTGATGCAACTTCGGCCCAAAGTTTTCAGCATAGGAAACCAATATCCTTATCGTG
CTCATCTTCGGTGCTGGAGCAAATGTCTCATCATAGTCAATTCCATAAGTTTGACTATAT
CCTCCGGCAACCAATTTGGCCTTATACCATTCCGCCAATCCTTCCAGGATTCTGCTTCAC
CGTATAGATTCACTTACAACTCACTGCTTTCTTTTCTCCCCGTCAATGTGGTTAGCACCC
ACTTGTTTTTCTTCAGTGCTTTCAAGTACTCTATCGTCGCTTCATGCCACTTCAGATCTT
ACTTTGTGGCCTTCCAATCCTTTGGGATTGACACTGTTTATAGAGAGGCAACAAACGCCC
TACAGGAAGGAGACAAGGCCTCGAAAGGCACAAAATTGCAAATGTCATGGTCGTCAAAAC
CATCTTGTGGTAGAGACTTTCTTGCCACTTCACCCTTCCTTGCCGCTTCAGGTGTCCCCT
TTTGCAACACAATAAGAAGTTCGATTGTGTCAGATGAGTTTGCATCACTTCCTTGCTGCT
CCCCTTGCACTTGTGGATGCCATCGATTCTCAACAGGAAGCTGGAGAGTACCAATTTGAA
TTGTACCTACTGTTGGCCTGAACCCGCACATCATCATTAGTGAACCAATCTGAATTGTAC
CTACTGTTGGCCTGAACCTGCACATCATCATTAGTGAAAGTACCGACCGGGGTTATACCC
ACTATGGGCTAATCCTGAACCTGCACATCGTCATTAGTGTTAGTGTCCACATAATCACCT
TGGGTATGAGACACAACCTTCTCCCCCTCTTGACCATCCTTCATAGAGTGTAAGTGGTCA
AGCTCTTCAAACAATAGAGATATTATGGCTCACCATAGAAGGGCTCAGACTCCCTGAAGG
TGACATCCATACTGACAAACCTGCGTTTCTTAGAGGTACACCAACATTTATACTCACTGA
CTAGAAGAATAGCCTAGAAATACACGCTTCACTACACGTAGATCTAGCTTCCCATTTGAA
GGCCGGTGATCTCGAACAAAACAGGTACTGCGAAACAACTTCAGGAGAACAACAAACTTA
GTTTCTCCAAACAACAACTAACACGGAGATTTTGTGCGTAGTATTCGTGAAGGTGTCTGG
TTGATTAGGTATGTGTCTGTCATAGCTGCTCCACTCCACAAGACCTTGGGCACATTCATC
GTGTACATCAACGATCGAGCAACCTTAAGAATATGTCGATTCTTCCTTTTTGTCACTCCA
TTCTTTGGTGTGTGTGTGTGTGTGTGTGTAGTTTGATGAAGAATACCTTGGTTAGAAAAG
AAGGCCCCAAAGGTGTTGTTCACGTACTCTATGCCATTGTCAGTCCTGATGACCCACAAC
TGATACTTCACAAAGGCATGGAATTTTTGAAAACAGCTAAACACCTCATCCTTGCGACGC
CTCAAATAAATTCAAGTCATACGAGAATACAACAACAAAGCCTTTAGTCCCAAACAAGTT
GGGGTAGTCTATGTTAGAGTACAATATATAGTCATGTAGCCTTTTGTATTTACCCCATTG
TATAAGGGGTCTTCTGCATATTTCCTGCACTTGTACATGTATATATACTGGCCTATNNNN
NNATGGGAATACAAGTTGCATATTTCCTAACATGGTATTAGAGCCTTAGGGTTTTCTTTT
CGCACACGCAACTCGTGCTCTCTGATCCAATCTCATCTCACACGCTGCTGCCTTCTCCCA
CTGACCGTCGCTGTCTACCCCGACTTCTTTTGACATTATCAGCACACTTTAGCCGTCCGC
TATGTACCGGAGCTTCTGGAGGCCTGTGTTGAATATGCCCAAACCATCTCAGACGATATT
GGACAAGCTTCTCTTCAATCGGTGTTACCCCAACTCTACCTCATATATCATCATCCTGGA
CTCGGTCGATAAAGGTAAGGAAATACTTCATTTCATTCATTGACACCGCTTGACGCCATT
GGGAAGTCCATACATCCGAATGAATAAGTATAAAAGAGGAGATATGCTTCTAAGCCCCTT
ACTCACATAAGATGCTCTTGTGTGTTTTGCATATCCGCAAGCATCACATGTCAACTTGCC
CTTGCCTATTCCCACATAACATACAAAAATATTCTACTCATCTTATCAAAATGTACATGC
CCCATCCTACAGTGATGGATCATCGCCTGCTACTCCTTTTCCTCCTGGTTGCAACACACA
CCAAGTTTGTCTACATCCCCTTGGTCCACATACGAGAGCCCCCGATGCCTAGTGTCAGTC
CCAACCGCCTGCCTCGCCCGTCGTTCCTGAATCAAGCAACAAAACTTGTCAAAAGTCACG
CGACAGTATGTTTGATCAATTAGAGCACTTACAGAGACCAAATTGATAGGAAACGCTGGT
ACACATGACAAAGAAATGGTTGAAGTGCACTTTATTATGCCAACCCCTTCGACAGGTTTT
GTACCATCGGCAGTTTGAATAGTGCCCTTGTGAGTAGGAGGAAGCTTATTGTAAGACTCA
AACACACTGCGTTTACTCGCAACATGCTTAGATGTACCAGTCTAGAACCCACTCGTGTTC
ACCATGTGAGCCACCCTTGCCCGCGCAACATCAATGGACGCTTTGGCCTTTGGCAGAGGG
CAGACATGCACACAGCACAACTTCCTTCTTGATGGCGGCGAGCAGGGCATCCTTCGAGTC
TTTACTTGTTGAGGCAGGCAGCCCCCAACGCCTGCACCCAGCTACATCTCCGCTTCCTCT
GAGCACTTCATCTCCTACGTGCCTTCCTCTTCCTTCCTCTGTGTCACATGAATCTGGCCG
CACTGAATCCATGACCTGGTCTCCTCCTCTAAGGCGTTGAACATATCCACAGCCTCACCA
CCTGCCATCCTCCTCCCAGGCAGCAATAAGCAGCAGCTAGCCTCCCTTTCTCCCCTCTGA
CGAGCAGCTACACGCAGCAGCAATCACTTCGAGCAGAAGTAGCAGCAATCCAGCCCTCAG
CAGTTCCAGCTGCCTCCTCTTCCCTTTCTAATCAACAGCAGCAGCAGAAGCAGAAGCACA
GCCACACAGCACCAGGAGACAAAACAGTAGCACATGCAGTAGCAGCTCCTCCTTCCTCTC
CAAGCAGCAGCAGCAAACTCAGCAGTACCGCACCCAGCAGCTTCCTCTTTTTCCTCCCGT
GCAGCAACTCCAGCAGCCGCATTTCCTCTTCTTCCTCCCGCTCTGCAACAGCAGCTGCAG
CTCGCGCAGAGCCAGTGCACGAGCGAGCCGCCCCCCCCGCGGCCGCCCGCGGGCGCCCGC
CCCTCCCCCCCCCCCCCCCCCCCCGTCCCCCCCCC