morexGenes - Barley RNA-seq Database

Contig contig_55369
Source Contig contig_55369
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55369 (5395 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_55369

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68801	1	1839 bp	AK368118	Available	Available	None
CDS Structure of MLOC_68801

Contig Sequence (5395 bp)

>contig_55369 5395 assembly3_WGSMorex_rbca.fasta
AATGAGATCACCTATGATACTAGTTTATGATACTATGCACTATAAAGGTAGTATCATACA
ATAGTATCATATGCATGATGCTACTATATGTTACTCCCCACTATGATCAGCCTAACTCAG
TTGTTTCCTGCAAGTTTAGATGATTTAAAGTATCCCATTTTGACGGAATTGAAACATTCT
TAACATCATACCATCTCCAAGACACATGAAGGCACATGAGCGTTAATTCACCCACCAGGA
TTTGACTTGCATTAATGGAATTATTTCGTGATTGTAATGGTGCCTCCCTTAAAGTGTTAC
AAAGTTTGATGATAGAAAGGAGAACCATAGTGACATAATAATCTTCTGGAAATTGAGTTA
TTCTATTTACATTATGCTTGCCTTGAATCACTTGTACTTGACGTTTTGGCCTTGTTGTTT
TTTAAAGACAACAAACTGATATTCTTAGAAAAGTAGTAGAACTTATATTGGTGTATGCCC
TTTTGCTTCTCCGTTTAACTGATGTCATTCATGTGATGGTGCTGTTTACTGTAAATATTA
ATTTGATTGTGCTTCATGCTATAGGGTGTGAGAGAGGAGGTCATTGTTGACCTTGTTGGG
CAGTGTCGATCTTACCATGCTCGTGTGATGGATCTTGTTAGCGATACTGGGTATGCATCT
TTTCACTCTGCCTTTCGGTTCTGTGCTTTTTGCATTGTCATGTGACAGGACTTCATGTAT
TCCCTCTGCAGTGATGAGAGCCTTCTGTTTCAGGCTCTAGGACTAAATGATGAGTTGCAG
CGTGTTCTTCAGCGTCATGATGACATAGCAAAAGGAGTTCCTCCAAACATACCAGTGCCT
GTTGCTGGTAATGTAAACCAAGGGGCAGCCCCTCCTCGGCCTGCCGGGGTGTCATTTTCC
CCTCTTCTTAATGTACACCATGAGGACGATGAACCAGAAGATGAGTTCTCTGTGCTTTCT
CGCAGGTAAGCTATATTTGTTTTTTCCCATTACATTTGACTCTCATCTTTTCATGCTTAT
TGGTGTTCCATGCTTTGGATAGTTTCTGCAACCTCAATTCGTATTATCGTTTTCTCAAAT
TGCGCTCCTCATGACTAAAATTGTAGGTCTGCACGGGACGCCGCAGCAGCACAGGGCAAC
ATGTCTTCTGTTCCGAGAAATGAAAGGCCATACCCGAGCCCACTTCTTCCCCCACCACCA
TCGACAAAAAGGCCTGTTTACACAGAGGCAAGCAGTGTCGACTATCTAAGTGGAGACTCC
TACAAATCGGAAAAAGTACCAGATGATTTTGTCAACCCAACAGCCCCCGCAAATATATCT
GCACCATCTTATTCAAAAACAGAGACGGATCACGAGCCAAAATATGATAGCAGGTCAGAA
TATGTGCCTGATGACTTCATAAACCCAACTGCAGCACCCAGTTTTTCCATGCCCTCTCGC
CCTACGAGTGAGCCGAATAATTCATCTGTGAATAAGCTTGAGAGCCTTCCTGATGATGAC
TTCATAAACCCCACTGCACTTCCTGGCTTTTCTTCGTCTTCAACTAGTGAAGATCTTCCA
AAAGCTCCATGGGAAGCGCAAGCTCCAGTTTCCCTACCACCGCCTCCTGCAAGGCATGGC
CAAAGACAACAGTTCTTTGAGCAACAGCATGGCTTTCCTGGTGGGAACAATGAAGGTGGC
TATGATGAAATACTGACGCAGACAGGAAGCCTTTCTCTTAATCAAAGGAACACTGAGAAT
GGGAAGAGTGCATCGGTGTCGACTGCATCCCGCCAGCCCAAACATGAGGATGCCCTTTTT
AAGGATCTTGTTGATTTTGCCAAGAAGAATCCGTCTTCTCCATCTAAACCAGCCAACAGC
CGCAGGACTCGCTGAGTGATGAGTGTTCCAGTCATGTAACACACATAATTGAGTTGCCGG
CCTGCTGGTTTTGCTACAGGCTAGCGAATTAGATATACCGTCAAATAAGAGGGTTCGGAG
TTTGGACTGTTTCACATCACAACATTGGCAGTTATTTGATTTGCGCATTGGACAATTAAA
ATCACAGGTTCAGATACATAGTCATGATACTGGGTGTGGTGTGTAGTGAGCTGCCTTTCA
CCTTTTTCTTGTGTGGTATTGGTTATCGATTCTGGCTTTATTTTGCTTAGCTGTATATAT
TTCTCCATTTGACAGCAGTATTCTATTCATAGTTGAGTTTACGATTGATCTTGTAAGACT
TAGTTAACAGTTTATTTTCAACGTGGACGCTCCCATTTGTTCTTGTACTGAGCAGTAACC
TTGGCTAGAATTCAAGCTCCTTGCAACTAAATTATGGTGCCGTTTGAACTTCCGTTCTTA
AATATAACTTTTTTTAGAGTTTTCATTGACGGACTATATATAGATGTATATAGACATAAT
TTAGAGTGTAGATTTATTCATTTTGTTTCTTATGTACTCCCTTCGTCTCAAAATAAGTGT
CGCGGATTTAGTACTAAACTAGTATAAATTTTATACTAGATCAACGACACTTATTTTGGG
ACAGATGGAGTAGTTTTTAGCGAATTTTTAGGAAAACTTCGATTTAGGAACAATCTGATG
CTTATGGTTAACATTAAGTTATACTGTCCACTATACTGTCCGTTTGCCTACATGCAAGAA
GAGTCAGCCAAAAGTTCATGCTTGCAAGAAGAACCATGGACGGAGGCGAGAGCTTTCAAA
TAATGGTTCCAGGATTTTTTTTAATAAATTGTCAAGTTTTTTCCTAAGTCGGCTAGAGGT
GTTCCGTGTTAGCTGCACATCCATGTGTACATTTTTTTCTTCCAAAGAAAGTGTGTTCGT
CAACTTGCAATTGTATTTGTTTTCCCTACGTTGTGAGAGATCTTTCCTCACATTTTTTAA
ACACAGTATAATAATAGATGACCGCATACACGCATCTAAACTCATCCCTATGAATACATC
CAATATCCTTAGGAAAACACTCAGAAAACACTCAGAATCAACGGATGATTTCTTCTCCCG
TAAACCGTCTCCTCTCCACGCAACGTGCCTCCTTGGTCATCTAACCGCTTTTTCCTCCCA
CCTTATCCCATCCACTCATTTTTCCTCCACTCGTTTCTATCTCCCTCCGTCTTTTACCTT
GCTCGGTTGCTCCCACCGAGAGTTCCCTTCCACTGAAGCTGCCACTCGCACGCGTTGCTG
CCACATGCTGCTGCAAGCACGCACATCACCGGCGGCAACAGATACTACAACGAAGCATCG
TTTAAGAGCCGTCGCTGCAACCGTAGGATCACACAAGCCATCGACGATGTAGTGTAGCTT
CGCTCATGGTGGTGGCCGTGATGCTGCAAACCTGCAGTTCTCGTCGGCGGCGGGCAGATG
CTGCAACGTAGCGTCGCCCGACAGCCAGTGCTGCAATAGCAGGATCCAACCGGTGGTCGG
CGCTGCAACGCAGCATCGCTCGGGGTGGTTATTATGGTGTTGCAACCTGAAGACCTCCCC
GACGGCAGTAGATGGTGCAACACAGCGTTGCGCCCCAACCAGATCTCGCCGGTGGCGGGC
GCTGCAAAACAACAAGCACGGCGCTGCAACCCAAAGACGTCGCCGGCAACACATGCTTCA
ATGCAACAACGACGAAGTTCCAAAGCAGCATCCATGGAGGTACCAACTATGGTGGTGGTC
GCGACGTCGTCCTCTATCTTTTTTTGCAGCAATTGATCCTGCTGATGGCGTCACGCATCA
CCAACGCTACGCTCGTCAGGGTGTCTCAACATCGTCGTTGCACGAGTTCGTCGGCGGTGG
TGCAACGACAGGGCGTCGGTGGTGTAGCCACACAGTTCGCAAGCTCATCGTGCCGCGGAG
CGTATCTGTCGTCACGCAGGTGCACATGCTAGGGAGGGGTTGATGCGAGACGGGAGGGGG
AGGAAGACACGGTTGCATTGGTGCGGATCCGACGACCACCAGCGCCAGATCAGACGGCTG
GCGAGGCGGTTGATTTCTCGTGGAAATCATCCGGCTGATTTGTAGCATCCGCCATATCCT
TATGAGCATCTCTAGGATACTGAGCCGACATAGCATCCTGAGATTGACGAAGTTATCATA
GTTGCATCGTAGTCAACAATAAACATCATTGAAAAGCTTGAAATAAATGCAAAAAAAATA
TAAGCACGAGTGCCAAGTCTAGGCCATGTTTGTTTGGGTTTTTTCTTCTACTTTTGTAGT
TTTTTCATATTACCAAATAAGTCAAAAAACTTAAAGCCGAAGCGAAAGGCACATATTTAG
GTTTTTTGTGATTTTTTTTGCCAAAGTGAAAAACTGAAAAAGCAGAAGCAAAAGGCCAAG
CAAATAGTGCCTAAGACTTAGAACCTTAGTGGGTTGGTTATTTGGTTTCACTACAAGAAA
TCTAATCATATGCGTCCAGTTCACATCTTTTCTCACACTTGGTACTACTACTTAGTTCAC
TAAGCAGAATTATCATAATTCATTGCATGATAACCTAATTTACTAGGCTGGCCGCCGCTC
ATGAGGAGGAAAATGGGTAGCTTAAAGGGGTTCAGGTGTGTCATGATTACCCTATATTTT
CCACTTATTATTTGTCGATGATTCATTGATCCTAATGACGGCACATGCTATGAATTCTAT
TGCCTTGAAGAGATTTGTAGATGATTATTGTTATGCTTCAGGATAGATGGTTAGACCTGC
CAAATTTATTTTAGTCCTAATACAAGTGTGGATGATAAGGTGGATGTGTGCCAAATTCTG
GACATTATGACTGAATCTATTTCTGATAAATATTTGGGACTGCATTCTATGATCGGTGTT
GATCAAGTTGACTGCTTCAAACATCTTATAGAAAGTATACAAAAGCTCGTCAATGGTTGG
AAAGAAAGAACTTTGTCCTATGAAGGGAAAGAGGCTCTAATGTAAGTGATGGTGAAAGAG
CATGGTGCCCACATGTTCGATTTTGGTAATTGATGACAGTCCCTATGGATTAACGGTCTT
CTTGAGATATATTTGAAGGGTTTGTCTGTAGACCATGCTTGAAGCCATTTGTTGGTTTCA
AAGTTATTAAAAGAAGATTATGTGTTGACCAGGATGCTATTCAAGGAGTTATCCAATGAT
TGGTCATAGAGAAGATATGATGCTTTGTTGATCAAGACTAAGTACAAAGAGTTATTGAAG
GTAATCAACACACAAAGTGTAGAAGATGTACCAACTAGGATCAAGTGATCCCATGGTATG
GTAAGTATTATCGATTACACTTTGTGTACTAACTCATGGTCTACGTCAGAGTTATTTGTG
TGGTTAGGTATGTGTCCATGGGCGTGTATCAAAAGGAAGATCTCATATGATCCATGGAGG
ATGACATCAAATGGTGATCGTCATCAAGGTTGCGGTGTGCAAGTTCACGTGGATC