morexGenes - Barley RNA-seq Database

Contig contig_55363

Source Contig contig_55363

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_55363 (5500 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_55363

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68798	1	1029 bp	None	Available	Available	None
MLOC_68799	3	1229 bp	AK374511	Available	Available	None
MLOC_68797	1	307 bp	MLOC_68797.1	Available	Available	None

CDS Structure of MLOC_68798

CDS Structure of MLOC_68799

CDS Structure of MLOC_68797

Contig Sequence (5500 bp)

>contig_55363 5500 assembly3_WGSMorex_rbca.fasta
TAGGCATGGAGTAAAAATAGGTGAAGTATTTTTGTTCCGGATAACATAAATAAATTATTG
CATGATTATTATAAGAAATCACCTCACAAATATGCAAATATGAAATATTTTTGGTCATAT
CCAAGGTAGCCATGTCATCATTACAATATTCTCATCAACATCGAGCAAATCAAACTGAGT
TATAGTGTAGCACCGATATAGCGTGCAACTAAACTTACAATGCCAAGAGGAGCACAATTT
TATCTCAACAAATAAACTTGTTTTAATGACAAATATGTACTACATCAAGTCGGCATGGAG
TTATATCCATTTTCAAGTTTCAAGGGCAAGAAACTGAGTTATGTAGCCCGATGCAACCAT
TGTCTCTCTACGCGGATGGCGTGGTCCTATTCATCAAGCCAACACAGTCTAACCTCCATT
TGGTGATGGAGATGTTTCACATTTTTGGTGGCTTCATGCTTCAAGGTCAACTACAACAAA
TCCTCGGCTATTATGATCAGGTTTGAGGATTCGGGCGAGGAGCTTGTCAAGAATACGCTT
CCATGAAAAATTACGACATTTTCATGCAAATACCTCGGGCTGCAGTTGAGCATTTGGCAG
CTACGTAGGTCAGAATGGCAACCAATTATGGATGCGACTCTCCACATTATGCCTGGATGG
CAAAGGGGCTTGGTGACTAGGCCTGGACGGCTGGTTCTCGTGAACCAGGTCATGAGAGCT
AGGGCTACTCATCACTTGATGATCGCGGAGGCGCCCAAGTGGGTTGTGGAAAATGTGGAC
AAAGGCTGTCGGGCTTTCTTCTGGGCCGGAACTGAGGAGATTCATGGGGGCAAATGTGTC
GTGTCATGGGATCGTGTATGCCGGTCTAAGCGTCTAGGTGGGCTCGGCTTGATCGGCCTA
TATAAGCACGGGATTGCTCTCACAGTGTGGAGTGGCTCCGACGTACAGACTGCTCCAGGC
CTTGGCAAGGGTTAAACCTAACTGCGGACAAGCATGTTGCTCAGGCGTACGGAACTCTGG
TGAAATGGAAGCTAGGAGCGGGCGCCCAAGTCTTGTTATGAAAAGACAGATGGATAAACG
GCGCAAAAATCAACGATATTGCACCCTTGGTGGTTATAAGGGTCAAAACCCAAGTTGTCA
ACAGGAGACTGGCTAGAGATGCACTACACATGCACGCTTGGACAAATGATATCACACGAG
AGATGTGCACTGACAGCCTGGCTCGGTTCATCACGTTATGGGAGATTCTCATCGAGGTGG
AGATCCATCCTGAATATGAGGACATGCCGATGTGGACTTGGAATGCTATGTGAAGGTGGC
ACTAGATTCAAATCCTACGCTGCCATTTGGAAGAGTTGGGCCCCTTTGGCGTGCAGGTTA
TTCATGTGGCTGGCGGTGCAATACCGCATGTGGACATCGTACAGGAGGACTAGGCATGGG
CTGCAAGATGTTACCTCACCTTGCTACTTGTGTGATCAAGAGGAGGGCACATTGCTACTT
GTGTGATCAAGAGGAGGGCACCTTGCTACTTGTGCGATCAAGAGGAAGGCACGATCGACC
ATATCTTGTTACAGTGTGTTCTCACAAGGTAAGTATGGTACCTTTGCTTCATCAGGATGG
GTTTGGACGCACATCTGTGTCCAACACATGCAAGATTGGTGAAGTGGTGGTCGGTGACTA
GAATGCGAATCCCCAAGTGCACTCGAAAAAGCTCGCTGGTCATGCTAATCTGTTAGAGTT
TGTGCAAGCAAAGGAATGGTAGAGTGTTCCAAGTGCACTCAAAAAAGCTCGCTGGTCATG
CTAATCTGTTAGAGTTTGTGAAAGCAAAGGAATGGTAGAGTGTTTGGCGGGGCAACAGTC
CGGAACGATCGTCTGAAGAAATACGTATGATCAAGGAATAGCGTTGCATGAATGGAGTGG
GGGCTGGGTTAAGATCGACTCGTGATTTCTAACTAACAATAGCTGTAACATCTTGTACAT
ATAATATGCCTTCTAGTATAAAGCTATGGTACGTCTACCCTCAGAAAAAAAAAAGGCAAG
AAACTAATACGAACTTGATGGATTAAGAAGTAAAAGGTTACACCACCTAAAATACAAGAA
ATACAGCTGCAGGAAGCCGTTCTTAACAATTCTCCAAATTTCAACAGACAGACCGCCCTC
TAAAATTCAAAAGACAGACAGGCAAGAAGCATCAACTTCCAAGTTATGGTTGTTCTTCAA
ATTTCATACAATAAACGCCAAGGAACAGATCAGTGGTTGCCTTCGTTCGATTGTGCATAG
GAGAATGCAGCCTGTGGAGGGGGCGCTGGGGCCAGGGGCGGAGCGACAGAAGTTGAGCCT
GCAGTTGGTGGTTGATACATCGGTGGAGGGCCTGGAGGTGATGCGTTGTTGGACATGGGT
GCACCTGGGGCCCCAGATGTTGGAGGTGGTAGTGTCTGAGGCCTTGGGAGAGGTGCCACC
TGCATAGGCATTGAACCAGGAGGGGCCCCGGGCAGTGGCATGGTTGGAGCACCAGGATAA
CCTGACAAACATTTGTAGGAAAAGAGTCAATTGAGATGATCGATTACTATTTCAAATGAT
AAGAAATTCAGATATTTGAATGCTTTACTGAAAATAGGAATTCAACTCTCATAAAGAACA
GCTACATTAAGTTCCCTTCTTTTCTAAGATGAGCATTTCCCTTGACTGCAGTCAATTGTA
GAGTGTCAAACGTGTTTGTGGCTTTCTGTTCTTGACTGATAAGTGGCAACTGATCTTATA
TGGCATTACAAAATGAAATAAAGTAATGAAACTAAAGAAGTACCAATGCATCATGAATAA
ACTGGATGCACACTTTTAAACATTTAGTTGCAATAATTGCACAACAAAAGGACATGTTGA
TTACCACTGGATCACAAAGCCGCAGTACAGTGTTTACCCTAAAAAAAACACCCAGGTGCA
CGTAGCTCCTGCTTGCACAGGGTCGGGGAAGAGTCCGACCATTTTGGGTCTTCTGTATGC
AGCCTTTCACTACATTTCTGCAAGAGGCTGTTTCCAAACTTGATCCCATGATCTCATGTG
GTCACAAGGCAACAGCTTTACCGCTGCACCAAGGTCCCCCCTCAGTACTGTTAGAGTTGT
ATTCTAGCCTATATGTTTTCCGCTTGTATGATGGGTTTCCTGCATATTTACCACCTGTAC
ATGTACATATATACATATATATATATATATATATGTTGGCCATTGGCCCTCAGGGAATAC
AAGTTGCATATTCCTAANNNNNNATTAGAGCTAGGTCAATTTTTTGCACGCTGCAACTCG
TGCTACTCGTGCTATTGATCCACTGATCCACGCGCGTGGCCGCCATTACTTTCTCTTCTC
GTAGCCGCCAACTCTCCACATCCGCTAATCTCTCAACGCCGGGCCGTCTCCTTCCCATGT
CTCGTCCGTCTGCCTGCCTGGTGTGTCTGCCCGCCTCCTTCGCCCGTCCCTCCCTTGAGC
CGCCGCTCTCCAGATCAAGCGGCCGGAGGACTCCCGATCAAGCCGCCGCTGCATTTCTCC
ACGCCAGATCAAGCAACTGATAATCGTCGCATGTCGCAAGATCCGCTGGAATGAGCCGCT
GCAGAGCTTCTCCGCTGGATCGCTCCGCCTGGTCCACTGGTCTAGATCGGTAGCCTCTAG
ATCGAGTCATTCCCTGGATCACGTCTAAGTTGCCTGCTGCCTAATCTGCCTGCTGGTGCC
AAACCCCGGCTGCACATGGTCTTCCGCTGGACCTGGTCTCTGCCCGCTGGACTGCCTCAG
CGCACATGGTCTTCGGCTGGACCTGGTCCCGTTCGGCTGCTGGTTCTTCTCAAGTAAAAG
AGAGATGTTTTTATCGGGTCCGCATGTCCCTTGCTGCCCGCTGACTCTTGACGGTGTCAC
TACTCCTGTCTCGCACATGCGCCGTTTCTCGATGCTTGATGCTCGTTCGCCTGTGACGCC
ATCCCCTTTTTACATCTTTCGCTGGCTGTGTTGGTCGCTCTTCTATGTCTCCACTTGCGA
CCTCCGCACATGGTGATTGTCGTTCTACACCGACTCCTCTCGCGACTTTCACTGATGAAT
GTCGCTCTTCCCCGACACCTCTCACATTTTCAGTGGCTGTGCTGGTGCATATGACTACAT
TGACTGCACCTTGCACACGCGTCTTCCCCTGACACTTGGTGCTTGCCTGCATACAGCCTC
GTCTCCTCCACCGGCCTTTGCGGACGATACTGTTCATGCTACACCGCCACATTTAGCGGC
TTCCGTAGGTGGTCATGGTCGCTCCTCCCGATGCTACTGTGTCGACTACTTCAATTGTGT
ACTTCACTGAGGAGATTGAGCGACTTCGCACCCTGCTGACTGTCTTCGACTCTATTGTCG
GGTGCATCTACGTCGACATCTTCAGTTGCGCCACTGACTAAGCAGGAGATTGTGCTATTT
CGATGCCTGCTAGCTCCATCTTCCGGCTCTCCATCGACAGGTTTTGTTGGTTCTGCTACA
GACTCTTCTGACATTGTGAGACCACCTTCTACACAAGCAGGTACATCTCCATGATTCTTG
ATACCAGAGCATCTTTTCATATGACTCATGATTCATCCACACTGTCCTCTACTCGACATC
TTGATTCTCCTGTTCACATTCGTTCTTACTGCTAATGTCTCTTACTGTTCACATTCGTTC
TTACTGCTAATGTCAGCTTTTCATGTTCTCAATGTGGCTCACGTTCCTCGACTTACCATC
GAGCTCATTTCTGGTGGTCAGGTTGTTAACTCTGGTTGCAGGGTCGTTCTTGACTTTGAC
TCATGTTTCGTTTTGGACGTCAAACTGATGCTCTCCTTGGTGCTGGGCCTAGCGTCGTGA
CTCTCAAGGTCTCTGGGAGCTTGACTAACTGGCTTCACCTTCCATCCGCTGCCACCACCG
TCGGTCTCTCCAGCTCTCTTGCCTTGTCTACCAGCTCTGTTGCCTTGTCTACCAATTCTT
TTTAGCTGGTGGCATCGTCGCCTTGATCACTTGTGTGGCTCTCGCCTCATCCTTAGTTCG
ACGTGGTCTTCTTGGATCCGTCTTCGGCGGTGTGTCTTTAGACTATCAGGGTTGCCGGCT
TAGTAAACAGGTCCAATTACCTTATCCTCACAACGACACTATGTCTCAGCGTCCTTTTGA
CCTTGTTCACTCTCATGTCTAGGGTCCAACTCCCTTTGCCTCCAAAGGAGGTCATCGCTA
CTATATTATCTTTATAGATGATTTCTCTCACCATACATGGATATATTTTATGTCTTCTCG
TAGTGAGGTCTTATCTATCTAAAAGCGATTTGCTACCATGGTTCACACTCAGTTCTCTAC
GCCTATTCATGTGTTCCGTGTTGCCTCTGATGCAGTGTCGGCGATGCTAGGTCGACACCT
ATGGGGATCAACATGATACCCNTGTGATCGTAGGGCGGGAAAAACAGCGTCAAGAACAGA
CCAAACGATCAACGCTCGACAAGCCTTTTTACCCAGGTTC