morexGenes - Barley RNA-seq Database

Contig contig_55321
Source Contig contig_55321
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55321 (9082 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_55321

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68770	4	4199 bp	MLOC_68770.1	Available	Available	LOC_Os01g59490.1, FRAME:-3, EVALUE:0.0, 13101.m06321 protein FAD dependent oxidoreductase domain containing protein, expressed
CDS Structure of MLOC_68770

Contig Sequence (9082 bp)

>contig_55321 9082 assembly3_WGSMorex_rbca.fasta
TCTATAGACATCCGTATGTAGTCCACTAGTGAAATCTCTTTAAAGANNNNNNTTTAGGAA
CGGAGGGAGTACTTGGAAAGGATAGCTTTCATTTGTCAGTTTATCAGTGAATGAATATTA
CATGTGTTATCTTTGGTCTTTACTCACATCGGAAGTACCTGCTATTCATTATTGAGACTT
GAGAGTTTGGGTGTTTTGGTGATTTAGTTCATGCTTCTCGTGGTTAATGTGGGTGTGAAT
GTAAGTACATTCAGCAAATTACTTGGTAGTAATGGCTTGGATGGGGGATAGGATTTTTTT
TCCGTCTAGCTCAAAGCATTATCTTGATTCTTGTACACATTAGTGCATCAGGTGCTGCCT
TGATAAACTTATATCCCGTCAAATTCTTTATAGGAAAACAGCTTCGTCCTACAAGGAGTT
GGAAAGCAGGAAAGAAAGGGTTAAGAATCTTGAGAAATTGTATGCGGACATGGCCTTGCA
AAAAGAACTGAAGGTGCTTTTTCTCTGACGTATTAAAATATTTATTTTGCTTCAGTGAAG
TCCATATAATACCTTCGGTGACTGAACCATAAAATATTAAAATGTTAAGTTTATTGTGAA
AAATAATGTGAAAAATACAACTCAGTTGAACCCGTTTATATTTTGTCAGCAACCGAAGTC
TCGAGCAGCCTAGAGTAGATATCTTCAAACGAACTGGCTTATGGAATTTTTATGGTCACG
TCGATAGTATGGTAGTAGTACTTTTTTTGTTGTCAAGTTCTAAGTTACTGAACTTGTTTA
ATACCGGGGCAGAAACCTGGACGCAAAAGGAAGCTCCGTGAAGAAGAGATGGTAAATTCA
GTAAAACAGCCTGTTTACAAGTGGCGTGCGCAAAGAAAGCGGTGAGATGCTTTTAGTTTT
TATTATCTTGTTTACAAAATGTTATGTTTTCTTTCTGACCTATCAATTTATTCACCGTCG
TTCAGATGATAGGAATGAAGAAAGCTGGCTCTTCAAGAGTTTCACTTCCCTGTGACATTG
CCCAACACCCCATCCATTGCTTTCAAATATCTTTATAACCTTTTGCCTGGTGATATTTGC
GGATCCTGTGCCGGAGACAATGTACTGCTATTAGTCTATTACCATATGTTAATTTCTCGA
CATGTCAAGTGATCAGAGTTACCATGTAAGAACGATTTTGATGGATATAGTTGAAATCGT
GCCTGTGTTGTGTATCAAGATATTTGTGATAGGAAGCTAGTTTACTTGCATTCCACGATT
AGAAAGCAGAGTCAAATTGTCAGAGTTGCCTTGTATTTTTTATGCTAGTAAATGTACACT
ACCATCGTGCTTTCCATTGAATCATGGCCATCCAATTGTCATCAAATGGTCAACAGACGC
TTTATTGCATATACTTTTGCTCAGAGACACAAGCTGGTAATGCAGTGTATCCCTTCACGC
ACAACCTATGCGACATCAACCTACAATCGACATATTCTGTTTATTCGACTAGGCTGGAGA
GCCACATCTTTACAGGCTTCATCTTGTTCTCTCTCAAAATAAAAGGAAATATCATTGTAA
GCAATGCGATTCACATGATAGCCTCCAGCTGTCCTGGGTTCATCCATCTTTAATTCATCA
ATCGGTGATTGTTCGAGCTTTAATTCATCAATCGGTGATTGTTCGAGAATCAGGTGCTGT
TATGCCTTGAAACGATGTGTTCTGCAATTGCCAAGCTTGACGTCAAACCAGGGGATTCTA
TACCAAACACGTTAACCAGCCCAGGAATACCGTGGACATCCTCCCCCTGCAGTAGTCAAG
AGTGTTCAGCCTCTTGTGTATATCGATTATACTTAGACTGAAAAGTGAACTTTGAAGTTG
AATAACCTGAATAACAAAATCTGAAGGGCGCTGCCCTGGGCCAGAAAGCTTTGGCCGGAT
CCCAGAATAACCAGGCTCCAAAGAACCATCCTTGAGATTTGGAAAATACTTCCTTATCAC
AGAGTAAAATCCAGAACATCTGGTGGGGTTCACCGAGTAATCAAACCTGATGTACATAGA
TGCTAAAAATCATACAACATCCTAGCTTTTCCAAAAAAGAAGAAACTACTTCTACACAAC
TTGGTAAATTTTAGGCAACAACTGTAGTAACTTTATGTTTAAATATTGGACACCACTAGA
ACATTAGCATGCCATATTAGGTATTTGTAACTCCACCAATTTCAGCGATGTGTATAACAG
GTCAAAAAGACCATATATAATTAAACTGAACAAGCAAGCATACCTATTCAGGAAACATGA
CATGTCGTCCATTTTACCATCTAACCATTCAACATCTGGTCCAAATTTGACAAGGCCATT
TAAGTCTAGTGTGACATGGACCCCTATGCCACCATCCTCTGGTAGAGGGTATATTAAGTG
GCTGAAAGGACTCTTGGTTTGTGAGAGAGTGAAGTAACATCCACGGGCGTAGTAAGCCGG
GGGTACAAATGCTTGGTCAAGGCCATTAAGTCTTTTGGCCAGTGGAATTGCACTCAAACC
TGCTGCGTTTATTAGAAGTTTCGGAAGCAAAACAATCTGTGGGGGTACAGGAGAGCCTAT
AGAATGGTTCTCCAGCTCTTTGCTTTCAGAAATATGAAGCTCGATCCCTTCATCTCCAAC
ATGTCCACTGATGACTGCTGTGTTATATGATATGGTTGCGCCTAGGTTTTCAGCATCAGC
CTGCATCACATGATAGTATGAGATGCAACGCAATGGAGTGGACTAACATAAAATGGCCAT
AAGTACACATGCAGATGAACATAATATAATTGTGTAGAGGAAAGACCCATGAAGGAAATA
TTTTTGGATTACCAAGCCTGAACCCTTCAAACAATGCTGGGAGATCAAGGAAAAAGAAAG
AAAGGAACGTCAACATGGTTTAACTAGTTAAAATTACTTCGACAGTGCTCTCTACATAGC
ACTATTTAAGTTACTTATACGGTTTTCATTCTTGGAGAGTGGGAAAAGTAAGTTTCCACT
CCCCCACTTTAAAATAATTAAATCATTATAAAGGATTGTAGCAGGCAAAATAACCAATGC
AAAGACAAAAAATGGTACTGTAAGTATCAATAATAGATTAGGCAAGTACCAAAAGGGAGA
GCATGAATGAATGTGAGTCAACAATCCCAGTACTAGGTGATAGTAAAGCTTTCAAACAAC
GCAGTTCAGGTTCCATCTCCATGGCCTGAGAACCTTCCATCATCTGAAGATCATCCACCC
CATTGTCTTTAGCAGTCCTGAGGAGCATGTCCAGCTTTGCAGTCTCTGCAACACCAGTAG
CAACGATAAGTTTACCGAGCCGTTTATGGGGGATTGCTCGTTCTGCGCAGTACTTGTAGA
GCATCTCCCTTCCTCTTACACAAAGGCTAGCCTACAAAAAACATTTCGTAGGTAGCATTA
ATAACACGCACAAATGCGATAGCATCCTTCATATAAGCTTTAATTTCTATTCGACATAAC
ATGAAAAGAAATGTAATATGTCAAATAGCATAGGACAGGAAAGAGGATCATTATTAACAA
CATTATTGCTGGACAGAAGGGGAAAATGAAGTAATGAACTGTAATTTTCTACAAGTGCAT
CAGCATTGCGACAATACACCTTCAGAGGCATCAAAAGAATATTGCTGCTGCGATGTGCAA
AACCAAAAATCACACAAAGCGGGGACGAAGCTTACGATGATTTTTGTTGAATGGGCTTAT
TTATTTGCACGATGGAACTACGCGTTACTATCTTCTATAATAACATTTGTCTAACAACCG
AAATGAGCGTATAATATGGAGTAGACACCGATGAGCCAGAGATGTTAAATTGCTGATGCC
AACCATCCAAGATGACTGGTGAGAACTGACTGAACCAAGATTTACCCTGCAATGACAGGT
TTCTTTCCCAAATAAAAGCAGCTAGTAGAAAGGTAAGTAGAATCCTTGTGCACGAACTCG
TAGATTATACGGCTTGGCCGGGAAGGGGCGGCGCACCTTGAGGCTGCGGGGAGGGTAGTA
GATGCCGGCGTGGATGACCTCGCTGTTGCGGGAGCTGGTGCCGGTGCCGAAGCTGGAGGC
CGCCTCGACCACCACCACCTCGCGCCCGGCCATGGCCAGCGCGCGCGCCACCGCGAGGCC
GACCGCGCCGGCGCCCACCACGACCGCGTCCACCGCCTCCCGGGGGGTCCCGGCGGCCAA
CTGGGCGAGACCTCGCCGGCGGCAGGCCGCCGACAAGCGCCGCAGCGGAAGCATCACGGC
CGGCCCGGCTTCGGGAAGCGAGTTGAGGTCCGACCCTGGCCCGGTGGCACCAGTCGATCA
CTTCACTTTCAGTGGCCCGATCGTGTCCGACCGACAGTTTTCATCTCATCCCTCAAAAAA
AAAAAAAACGGATAATTGCCCCAGTAACTTTTTTCTGAAGGAAATCACTGTCACTGGCAA
CTACTTTCCCTGTCAAAAAAGGAAATTTCGCTTGTACATGTTGTGAAGATGCTTTCGAGA
CAAACTTACACACGGTTTTTTACCATCAGAACCTGAATATTTTTCAAGCTATTAGCAGAG
GTCAACTTTGCCTAAAGGGCGGGTATTCTGGAACTGAAAGGGGCAGTACAAATTATCAGC
GGCAGCCATCCGTTTTCTTCAATTGCTTTGGTTGGCACCGCTATAAGAATTCAATTTGAT
ACACTTGTGGTCAGAAAAGAGGTTGGAAGTCCGCCAGCTACTCTTTATTGCACATTTCAC
ACCAATCCCATATCAGTTCTACATCAGCTAGATCTAACGTATATAGTACTGTACACAAGT
AAGCAATCAAGCAGAAGGTGCCATAATGGAAATGACAATACCATTTGAGTCATGACACAT
AGGCAATCTTTATGTTTTACTTCCACAGGCAGAAATCATCGTTTCTGCTACACAACATAC
AACAACTCAACTTCCCTGCTGAGAGCAAGGCACGCATGGCATGACAGCGCTATGTAGGGA
GGAACATTACAAAGTGGTGGCAACGTGCAGACCTAACAATCTATATCACCCCATCCATCT
CCGGTAACTTTGTAAGCCCATTACTTCCTAGGGTTCTTTTCCCCTTCCCGTAGCCGTTTA
GCAGTTGGTTTCATATACAGCCAGGCCTTGTAGTTCCGGACCTTCCAAGCGTGGGTTCCT
CTCGAAGCTGGACATAAAACAGAATGCACACATGTCAACGAATGGGTCGACAAATGAAAT
GTCGTAATGGTTGTTAGAACATGAGCTGGAAAGTGTATACAAATAAAAAAATGCACCATT
ATGAAAAAGAAAACATAATGTGCACACCAGGCTCAAAAAGTTATCCATGTCCTTCGGTTC
ACAAAACATATCGAATACTGAAAAGAGAATTAGCAGAAAGGGCTGAAGAAGAAAACACTA
GGCGACGAAGGAAGTGCTTGGAGTGGGTCAACTAAACTATGCTCGAATCCACAGCAGTAG
GTGATAAAAAGCCTCCCATTCCTGCACTCATGCGCTTGGAAGATGCCCTTTCAGAATGAA
AAGATTATACCCTTTCGTATCAGAAATAGCGATTATCCACCTTATCATGGGAACAGTCAA
CCAAATCAATTTTGCAAATATAGAAGCATCCAACCATAGATGTGTAACTGAAGAATTGTG
AGGAAGTGACGACAAAATGCATGTGATTTTAGAATCCACATATTGGTCGGTCAAATAATC
ACAGGAGTGACTTCATTTGCCTTTCTTAAGTACTGGTTAAGAGACACACATCCTAAAATT
AAAGGCAGATTCTCTGTGGGTAATCAAACTTAGGCATATCTTGAAAATCTCCATGTCACA
GTACAATTAAAAAAGGCAAGCAAACTTACTTGCTGAGAGGAATGTGCTCAAACGGTCCAG
TCGTGGGAATGGTTCCACACAGATTATTACCAGAAACATCACTGAAAAACAATGAAGCCA
AAATTATCACATGGAAGATTCACGTGGAACCAACCGCACTCATCGTTGGAAATGAAACTG
TACTTACACAACTTTGAGGCTAGATATTCCTGCCAGCTCCCTTGGAATTGGTCCAGTCAA
ACGATTGCCATTGAGCCGCCTATGAAAGCACAACAGTGTGTTAATCACAAAATACAGAAC
TATAGTATTGCATCTGTACACAGCACCTACGAACAAATATCCTAGCAAAACCCAACACCA
TTAGAACAATACAGAATGTTCATCTTTAGCATAATCAGCAATAAATCAACATTCAGTTGC
TAATATGTGATAACTATTTCATATGCAGAGAGTATTTGAAGAGCATAAAACTTACAAGAA
TACAAGGGACTTCAACTTCCCAAGTGTTGGAGGAATAGTCCCCGAAACGTTGTTCTTGTA
CAAGTCCAAGCTAATTAGGTTCTTCAAATCACCAAGTTCCGACGGGATCGTACCTTCAAT
ATTATTTTTGTAAAGTTCCCTGTTGCAACACTAATAGTCAATACAACTGCATTGCATTGA
GATGAATAATCAGTAAACATTAAACACTAAACAGAAATTTTGATACATCAGGCCTAAATA
TCATCAAAACAAAATACTCCCTCCGTTCCNNNNNNNNNNNNNNNNNNNNNATTTCACTAA
GGGTCTACATACAGAGCAAAATGATTGAATCTATGCTCTAAAGTATGTCTATACATCCGT
ATGTAGTCCACTAGTGAAATCTCTACAAAGACTTATATTTCGGAACGGAGGGAGTAGAAC
ATAAAAAAAATGCAGCAACGACAAAAATGGAAATGGATCCTACGTACCCATTCAAAACAG
GATAGTTATTTAGTTACCCAATGTACTGAACAGGTTTTCGGAGGACATGTAATGGTTGTC
TGATACTATAATGGAAGCCATGGTTAGCTCCTTTTATATTTGAATATCTTAAGATCTCGT
AGTCATCATAGCAGGTTAATCCATGTCCATACAACAACAACAACAACAACAATAACAACA
ACAACAAAGCCCCAAACAAGTTGGGGTAGGCTAGAGGTGAAACCCATATGATCTCGCGAC
CAACTCATGGGGTTCTGGCACATGTATAACACGCTTCCACACACCCCTGTCCATGGCTAG
TTCTTTGGTCATACTCCAGCCCTTTAGATCTCTCTTTACAGAATCCTCCCATGTCAAGTT
CGGTCTACCCCGGCCTCTTTTGACATTATCAGCACGCTTTAGCCGTCTACTATGCACTGG
GGCTTCTGGAGGCCTGCGCTGAATATGCCCAAACCATCTCAAATGATGTTGGACAAGCTT
CTCTTCAATCGGCGCTACCCCAACTCTATCTCGTATATCGTCATTCCGGACTCGGTCCTT
CCTTGTGTGGCCACACATCCACATCTTAACATACGCATCTCCGCTACAGCTAACTGCTGC
ACATGTCGCCTTTTAGTTGGCCAACACTCAGCACCATACAACACTGCAGGTCGAACCTCC
GTCCTATAGAACTTGCCTTACTATTCAGTTTTGCTTTCAAGTTCTGCTACCGACTCAGGA
TTCAATTAGCTTAATTAACATAGGTCATAGTACTGTAAAGCTACTATATGATGTGATACA
GCTTAATACATAAGCTTTAAACTGGAAAAATAATCAATCTAAATTATTAGTTGAACGTTC
AAACAAATTTACACCTGGAGTCTGGAACATATGTCATTCTAGTTCAAAGTCTTTACCAAC
AACAAAGTCAGTATAAATCACATGCATGCAGGTTAAAACTGTCTCTTGTAGGATATATCC
CATCTATGGAGAAGCGCACATGAATTGGTAGTTACAACTTACAAGAGCCACATATCAGAC
CACATCACAAATCAATCAGCAGTAATTTGATGATCAGATGCTACTATCAGTGTTTTGCAA
ATTGCAACTTACATGGGACACATCATCTACTTCAACGAATATAACGTATTTTGCAAATGA
TGGAACTTTATGTGTAAACAGTAGTGAACACAAATGATACAGTAGGTTTCAGATTACTAC
TGGGAGAAACTAGCAATAAGAAGAAAACCACATGCAAGAAGAACTTACAGATATTGCAAA
TGCTCCAATTTACCAAGCTCGGGCACCAGATGACCAGATAAGTTCAAGTTACCAAGATCT
CTGTAAGATGGGGCATTTGAAGAGAACAATCAGATGAAAATATTCTGGTAAAATTTGCTC
TCATATAAATACAAGAATCATCAATAGCTTTTCTCCAAAAAAGAGAACAATTTACATGTC
CACACTGTTCATATGATACAGCAAAGAAATAATGCTATGGTGACTCAGCGACTATTTTTA
GATCCTGAGAGTTATCGTTTGGAAAGATATGGCATGCAAATTGAATCCTGAGTCTGATTG
GTATTCCCCCGCCTCTTTTTACTGTATTCCCCTTTTCAGTCTAAATGTTTTACTCCAACC
CTAATGCCCCAAGCAACAACAACAACAAAAAAACTTGAGAAGGCATGTTCAAACAGGTTA
ATTTACTATCCGGCTCTTGCTTTGATTCACGTAGGAACCTGCCCACTCTTCGCTGCCAAC
AATAAATAATCTACCAGTATTGAGTACCAAATCCTCGATTGCGTAACATTAGGTCTGTAC
TGTCAGGAACAAATTATACTAGGTAGGAAGCAACACATCCGCTGCAAAATCGTTTTCTCT
CTCTCGAGTCGCTCGAGCCTGGCTACCCGTATCCGACTCCCCATCCACAGACCACAGCCC
CGAACTCAACCCGAACCAAAACTAAAGGGCGAGCAAGCAAGGGACGCACAGGCGGGTGAC
GCGGTTGTCGCGGTCGCAGGTGACGTGGAACCAGGTGCAGGGGTTGACGAGGGTGGGGTC
CCAGCTCTGCAGCACGCCGCCGGGGTCCCGCAGGCTGCGGCGCAGCGCCGAGAGCGCGTC
GCCCTCGGAGTTGGCCCCCGCCAGCGCGACCGCGAACGCCGCGACGAGGGCCAGGCCCAG
GGCTCCGGCCGCCATGCTGGGGACGGGCGGGGGAGATCGGCCGCCGGATCTGGACGCGGC
GGGGCTGGCTGCGAGCAGCGGGTCGGGACAGCGGGGGGAGGCGGGAGGGGCGGGGGGGTT
GGTGGTGTGGCGGCACCGCTGC