morexGenes - Barley RNA-seq Database

Contig contig_55275
Source Contig contig_55275
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55275 (6182 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_55275

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68734	2	2386 bp	MLOC_68734.1	Available	Available	LOC_Os04g28090.1, FRAME:+1, EVALUE:0.0, 13104.m02658 protein MYB family transcription factor, putative, expressed
CDS Structure of MLOC_68734

Contig Sequence (6182 bp)

>contig_55275 6182 assembly3_WGSMorex_rbca.fasta
CTAATGCTTCCACCACCCCAAATTTCTGATATTGAATTAGAGGAGATTGCTAAGATGGGC
AATGCCGGCGATCCTGCTCTAGCCGAGGAGCTTGGTGAAGGAAGTACTGCTACCAGGACA
CTGCTTGCAAATTATTCCCAGACTCCAAGGCTTGGTATGACACCATTGCGAACGCCGCAA
CGAACGCCAGGTGGGAAAGGTGATGCTATTATGATGGAGGCAGAGAATCTTGCACGTCTA
AGGGAATCACAAACACCTCTTTTAGGAGGCGATAACCCGGAGCTTCATCCATCAGATTTC
TCTGGCGTTACACCACGTAAGAAAGAGATACAGACTCCAAATCCCATGGCAACACCTCTG
GCTAGCCCTGGCCCTGGTGTTACCCCAAGGATTGGTATGACACCATCCAGAGATGGAAAT
TCCTTTGGGTTAACTCCAAAAGCGACCCCTTTCAGGGATGAGCTTCACATAAATGAAGAG
GTGGAAATGCAAGACAGCGCACAGCTAGAGCTTCGTAGGCAAGCAGAGTTAAGAAAAGGT
CTGCGATCTGGTTTTGCTTCTATTCCACAGCCTAAGAATGAGTACCAGATAGTTATGCCA
CCTATTACAGAGGAGAATGAAGAATCTGAAGAGAAAATTGAAGAGGATATGTCAGACAGG
TTAGCACGAGAAAGGGCCGAGGAACAAGCAAGGCAGGAAGCATTGCTCAGAAAGAGGTCC
AAAGTGTTGCAGAGGAGTTTGCCTAGGCCACCTGCTGCTTCAGTGGAGATTCTCCGGCAA
TCTCTGATTAAAGGTGGTGAAACCAGAAGTACCTTTGTGCCTCCTACATCACTTGAACAA
GCTGACGAGCTAATAAATGAGGAACTCCTTAGGCTCCTTGAGCATGATAATGCTAAATAT
CCTCTTGATGAACAAACTCAAAGAGAGAAAAAGAAAGGCAGCAAGCGTCAGGCAAATGGG
GCAGCTTTCGTCCCTGAAATCGAAGGTTTTGATGAGCATGAACTAAAAGAGGTATACTTC
TTTTCTGTTCCTTTTTTATTATTGGTATTTGATGTTGAACTGTATATTCAATTTACATGA
TAACATATATTCCGATTTCATGTAGTATTAGGCACATCAATAATTACTTGCTGTGGTTTC
ATAATTGTATATACACAAGTGAGTAACACAGTAATATGGAATATAGCGCCTGTATGTGAG
CAGCAGGTCTAAACTATTCCTGTACCAACCTTTATGATCTTACTTCTGATAGCCAATTAC
TTTTATAGCTAATCCATTGGCATTGAGTGCTATCCTGGAGATGGCAAGGGAAGGAAAGCA
TGTTTATTTTGTATAGTGGGAGCTGTATACAGCACATCACTCACAAGATAACTGTTTTGC
TGTAGGATTCATTGAAGAATTGTGCTAGGTTTTATGCAGTGCTTACCCCATTTTTTAGGA
TACTCGTGTTTCTGGAAAATGAATGAATGCTCAAAAATCCAAGAGGCCACTAATCAGGTT
AAGCATGCATCACTTAGATGTGACATTGTCATGGATAGACAATGAGTGCACAAGATTGCT
TGAAAAACAACCTCTCTCGGGGATTGAAAGTTGAAAAGAATTTGAAAACCGTGGTTGGAA
GTCTGAAATATCAAGAATTCAATCAAGATAAAAATATATGGATTCTCCAGTTTGAAAATA
TGTCCCTCCGGAGTGTAAAGGATGTTACCATCTACAAGTAATGTGTTAGTTAGAATTGTT
ATGTTATGCACATGGGCACACACCATGTAGAGAACTGTGCAGTATTTCTTCACAATAGTA
TTGACAAAGTTTGAGATGTGTATTCTTTCTGCATAAGAACTCAGATACACATATATTGAA
TTACTGAAACACTTCTTCAATTTAGTAATCACTTATAGCCATCTGTCCTTTTTGTTTAGC
CTGACTAAGTGGGTTGTTGTCTAGCATACCATCTGTGAATGGAGATTTTTGCCTTTCAAT
AGAAGGCTGTGTGTTATGACTTGTGAGTGGGTGGTTTTCTTTAACCGTATATGGATTTGA
TTTCTTGCTAAATCTTATTTACGGTTTTTTATAGTTCTTTGTGCCAGTCCTGTTTGCCCG
CTTTAGTCTAATCGTAATGATGAAGAAGTTTTTAAAATCACATATTTATTTGTTGACAGG
CAAGTTCTATGGTTGAGGAGGAGATTCAGTATCTTCGTGTGGCCATGGGCCATGAAAATG
AATCTTTTGAGGATTTTGTAAAGTCACATGATGCATGCCAGGAGGACCTTATGTTTTTCC
CTACTAACAACAGCTATGGTCTTGCTAGTGTTGCTGGAAATGCTGATAAAATTTCTGCTT
TGCAACATGAGTTTGAAATGGTAAAGAAGAGAATGGATGATGAGGCAAAGAAAGCTTCTC
GGCTTGAGCAGAAGATCAAACTGCTGACACAAGGATACCAGGTTAGTTGAGGATGATGCA
TCATCTTTGTGGTATGCCTATATTAGTTTTAACTTTTTTCCAGACAGCATTTTATACAGT
CTAGCTATGCTAAATGTTTCTCTCTAGTCTGTGTAAGGGCACCAAGGGCACCTCTCTAAC
ATCTCTGCCCCATTGATGTTTGGTGTCATTTAAAAATGCACCATGTGTAAGCTAACCCAT
AATTTGAAAGATTATCCAGTTGCCCCAAACCAAACTTGCATAATTTGCAAAGAAATGCAA
CAGTTTAGTGATCACTTCTTATTTTGCTTTTCATTTGATACATACTGGATTAGTTCTATT
GCTTTTCATTTGATACATACTGGATTAGTTCTACTGAAACAATATTGTATGATATTGTTT
TCATTTTGTTTCTAGGTTTTCCATGTCGATTTGCAGTGCTGATGGTTTGTTCCACTTGTT
ATTTGATTTGTTAGGCTCGGGCTGCAAAATTGGGGTCACAGATCCAGGACACCTTCAAGC
AGATGAACACTGCAGCCACAGAACTTGAATGCTTCCAAGAGTTGCAGAAACAAGAACAGA
TGGCTGCTGCCTATCGTGTGAAAAATTTGTCTGATGAAGTGAATAAACAGAAAGCATTAG
AACGGACTCTCCAGAGCCGCTATGGTGATCTGCTGTCTGGATACCAGAGCATCCATGAAC
AACTTGAGGAGCACAAGAGGCTACTTAGGCTACAGGCAGAGACAATAGAGGCAGAAAACC
GTGCTAAGGAAGAGGCAATAGAGGCAGAAAACCGTGCTAAGGAGGAGGCAATAGAGGCAG
AAAACCGTGCTAAGGAAGCGGCAATAGAGGCAGAAACCCGTGCTAAGGAGGAGGAAGCTG
CAGCTCAAAATCGTGCTGCTGAGGAAGAAAATGAGAGGAAGAATCATGACATTGAAGAGG
AATCAGGACAGACGAATATGGTTACTGATGAAGAAGCTGCAGGAAGCAAAGAAATCAAGG
GGGATCAGATGGACATGGACAATGCAGATGTAGATGGAGACCTTGTAGGTCCTATTCCTC
CATTGCCTGACACTCAAGTGGATAACGATGGGGCTTCAGTTGGACAGACTACTTCTAATG
CTCATAGTGGGGACAGCGTTACCATGAACGAGGGCGCCATTGACAAGGTTGATTCATCCA
AATTAGATGACCAGGACAATACCAATTGTAGCATGGATGTTGATGCTGGTAGCCAAGAAG
AGGGGGGAAATGTTCCTAAGGCTGCTGCTACAAGTGTAGATGTAGGGAACACACCTGTAT
CTTGGGATCAAGCTGTCTCTAATGAAGGGAGTGACGCGGTTCACGCACCTGCATCTTCAG
ATCAAGCTGTCTCTAATGAAGGGAGTGACGCGGTTCACGCACCTGTGTCTTCAGATCAAG
CTGTCTCGAATGAAGAGAGTGATGCCGTTCCTGAATAAAACATCTTCCGCATACCTCATC
TGCGGCGGATGTCACAGGCATGATGCCAAAGGTGACTACTGAACACTAGCTCACGTACCA
TGTTTATTTTGTTAATTTTCTTCGGGCAACCTTCAGTTTCCTGTTGGTCTGAACATTTGT
GGAAGGTAAAAACCTGATATTTACAGTTTTCTATTGAGAATATGAACTTGAGAAAACTGG
TCACCCCGCTAGCGCCATGTTTGACCTCTCTTTTTTTGGGGGTCCGCGCTTCTGGTCCCT
CCTTTGAAGCACCACCCATGTTTGTGGGGTTATCACTCCTGCTGTTGTGCTGCCGGTGCT
GTTCATGTTGCTAGTGCTACTTACTAATGATTTCCAGAATGTGGCGCTTTAGCTTTGCTC
ATGTTTGATCATGTCTGTTAGCCTCATTGGTTTCAGGAAAAACACATGTGCACCTTCGTC
GCATGTGATTCAGACCACCATAATATATCACTGCTTGTTCAAAGATGTGATCTGAGAAAC
GACACAAATCTTGCTCATTTGTACACAGTTTCTGTATCTTAGGGCCTGTTTGGGACTGCT
TCAATTCACCAAAATCAGCTTCACTTCATTAAATTTATTTTGGAGCAGTTTCATACAGAA
GCTATAGCACTATCAAGAGAATGTTTGACTTCCGTTTAGCTCCAACTTCAAGAATAGAAA
ATTTGATGGAAAGAATCTATTTAATTGGTTGAGGGGAAAGAAATGAAGGGGTATCCACTT
ACTGGTGGCAGTGATGGGTAATTTCCTCCCAACTCCACCTTCTAGAGTTTTTTGGAGCAC
CCTCTTAGGAGCTTCATAAAAACTCTGAAGTTGAATCCCAGATTCTAGTTTTTTCAGGGA
GCAGCATATCGTGGAGCTACCCCGTTTGGCTTGTCTTTTCTAAACCAAAGCTGAATTTTA
AGGAGCAGTCTCAAAAAGAGCCAACGCCTTTCTTTGGGCCGTATGAATGAAGTACTTCAA
ATCTTGGGGCAAACAAGTACGATAAACACAACTCTTCGAGAAAAGAAATTTTGGTTCGTT
TTAGTATGTTACAACAACAACAACAACAAAGCCTTTTGTTTCAAGCAAATTGAGGTAGGC
TAGAGATGAAAACATACGAGAATTCATAAAAGAGATCTCCATGCAGTCTTACAAAGGGCC
AAATCTCCGGGTATATACAAGTCCTTGACGTCGAAAAAGTGCAAATGGAGCATGGGCACC
AGGATGGACTTAAAAAAAAACATATTTCCACATCACAAAAAAGTAAAAAAATATACATAT
GAAAATACATATATAACATGTTGAGGAAAAAATTCATAACAATATACTTTCATACGTGGC
GTATACATAAAAAACAAGAACATAAATGAAAATGGATCTTTTTTTGTTGTTTTTGGGCCA
TAATTTTTTAATTTTTGTGCAGCTTGTAAAAAATAAAATTTTTGAACGAAATTTCATAGA
TCCACTGCAAATACGTATAAGTTTTCAAATATTTATTTTGGGATTTAAAAAAAAATAGAA
ATATCATTTTTGAATCTTTTGAAATAAAGTCCTCTAATGCCCCCGTCCATTAAAACTTTG
CACTCTCCTTGATGTCTCCTTTTACTGTCTATTCTCATGTTAAGAGCATTGTCTATTCTC
ATGTTAAGAGCATCTCTAGCAGACCCCGTATAAAGTTAACCCGCAAAGTCGTTTACAGTT
CGAGAAAAAAGGGTTTTGTGGGCCAGTGCGGGCACGAATGGAATCAGATCCCGCAAAACG
GATCCGTAAAAAATATATTTGCAGAAGATGTTTTTTACGGGTTGGCAATACGGGGTCTGC
TCGGATGCCGCCACGTTGACCCGTAAACCGAAAAGCCTCCCAATAAGCGAATTTGAGAGC
GGTTCCGAGAAATGAATTCGATTTTAAACAATATAACATAGTTCGCGTGCAAAATGAAAG
CATAGTTTAAAATACAAACCCAAAAGGACTTCATGCATCCTGGTCGCTCTTCACTCCGCA
CCATCGAGGTCATCGTCGCCCCTGAATCCATCGACTCCCCCGTATCCATCGCTGACACTT
GTTCCAACTCCGGCATTGAAATCATCGACAATATTGGTTCCGATTCCCAATGAGAAAACA
TCGCCGCCATTGTAACACGCAAGCATCCTCNNNTTCAAGATTTCTCTCCTTGTCATATCA
TGCCATTCTTTGCTGATGTCGTCCATGTCATTACAGTTCAAAGTCATGATCCTGTTCTCT
TCGGCAAGAAGGTTGGCCATGGTTTTGTTCTCAGCAACACGTGCTCTTCTCTCCTCAATG
TC