Map Locations of contig_55155 (10905 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_55155

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68674 1 1648 bp AK359538 Available Available None





CDS Structure of MLOC_68674






Contig Sequence (10905 bp)

>contig_55155 10905 assembly3_WGSMorex_rbca.fasta
TTTAAGCGATTTTACTAAGGGTCTACATACGGAGCAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTGAAATCTCTACAAAGACTTATTTTA
GGAACGGAGGGAGTAGATGGTTTATTGAAGACAAAACATGTTCAAGTGATTGATTAGACC
GAGTTAAAATTTCAAGTAGACTGTTGAAACATTAGTACATGTGCCTTTTCATCAAAATAA
ATTGCATAATGGCAAGTATGAAGACAAGCTTAGATTGAGTGACACCAATATGTCATTTGT
ACGCAAGAGCACAGATAACTCCGACCAGCTTGCACACAAAGGGAGATGAACTAGCAATGA
GCTCCAAATAGAAAACAGACAATACAGAAGACACATAATTGCTTACCTGTACAAACAAGG
TTTCTGCATGCCCCATTACGGAAATCATGGAAAACTCTGTTACGGTGGTCCTGCAGCATC
TTTGCGTGGATGTAGAAGCAAGAGTAACCAAGCTCCGTGATCTTTTTCGCTAAAAGCTCA
ACACGATTTACAGAGTTGCAGAATATTATTGACTGGTTTATTTGAAGCTGTACCAATATA
AACATGAGTTGGATTATTTATATGTATGCAGGTGATCAAAATGTCCAACTAAATTAAGAG
GCAGTTATTAAACCTTGGAAAAGAGGGTGTTAAGACAATGAACTTTCTGCCTTTCTTCTA
CAAAAGCATAGAATTGTGTAATTCCCTTCAGTGTAAGTTCATCCATGAGGTTAATAACAT
AAGGTTTAGGCAGATATTTGTCCTTGAACTCCTTGACAGTCACAGGGAATGTTGCTGAAA
ACATTAAAATCTGTCGACTCGCTGGAAGGTAACGGATCAACTGCTCTATAGAAGGTTGAA
ATTCAGGAGAGAGAAGCTTGTCTGCCTGCGAAAAGCCAACACTTCTCATAAGAAAGCATG
AACATGTGTATGTAGATATATTTATTTACTGACAAGCCCAAGACTACAGAAGCAAATTCA
TTCAGCACAAATTCTACAAACAAAAATAGCTTTAATACATTTACTACAGTGTCCCAAGCA
AGTTGGGGTAGGCTAGACAAGTAACCCAAGAGAAAATAGATTCAATACATTTCATTATAT
TATATTACAAGATGAAGACGAGGGCACCGCCACCTTGTCTCTCAGCTTCAGGTACTATTT
GTCCTTTAGGAACCATAAATCAATTCATTTACAGACTATCTTTGCCGTCGTACATACTCT
TTACCAGTGTTTCATCTTTCTATCATTCTTATTCACAAGTAAATTAAGCAATGATCTTAA
TGTCAGTGCTTCTCACTACAAACTACTCCTTCCGTAAATTAATATAAGACATTTTTTGAC
ACTATGACAGTGCCAAAAACATCTTATATTAAGTTACGGAGGGAGTACTATTTAGCCTAA
ATACAGGAACTCATTTTTTTCACAGGGTTATTATTGCTTGCAAGTATACATGCTTTCTCA
TGAGTTTTATCGCATTCTTGTTGTTTTTAGAGTTCGTTGTTACAGTTTGATTTAAAAAAA
CTTATTTGTTCGACGGGAATAGAAAGGGCAGTTACTTGATGTAGTGGTTGAGGGGTGAAT
CATATACTTGCATGTTTGAGTCAGGAAAAACAGAATCGGCATAAGCATAGTCCAATAGCT
ACAAATTCTTCTTCTGGCATGATCTTCTTAAGGCACTTCTAAAATGACAACTGAAGGCAT
AGTGTGAGATGTAAGAACTATTTGGCTTGCTGATGAACTCAAGTTATGTATGCAAAATTG
CTCAGCTCAAACCAAGTTGCCAACCAGTTATAAACCCATGGCATGTTTGGTTCATGTACT
ACTACCTAAGGTTGCAAACTTCACAACTTCTTTGCTCAAACCCGAGGAGTACTTATCAAG
CTATATTACATTGTCAAAATAGGAGCTACATTTTGGCTAAGTCTAAGTGCATCTTTCAAC
AATTCTCTGAGTCAGTGACGTGTGCGACCCTCGTAGCAAAGAGTACTTAACATAGGTGCG
GCCACGAACGAAAGCAATTGTTAACTTAAACTCACTCGACTTGCCTAACTACCAAACAGG
CCCAGCAAAAAAATGCTACTCCCTCCGGTCCTAAATATAAGTCTTTCTAGACATTTCAGT
AGGGAACTACATACGGATTTATAGAGACATATTTTAGAGTGTAGATTCATTCATTTCGTT
TTGTATGTAGTCACCTAGTGAAATCTCTACAAAGACTTATATTTAGGAACGGAGGAAGTA
GTTGCCACCAATAGCTACATAAACTGTGTATTCGAAAACTTTTCATAACAGAGTGGCAAA
GTATGGTCAGCAACCAGCATCCAAAGAGACAGATACAAATACAAGTGAACAAATATTCAC
CATGTATTAAGATTAAAAAATAATCAGCCATTTACAAGACGATGCAAGCGATATGGCTAT
TTAGATGCGCATAGAATGAATTACCTCGTCCATAACAAGCATTGAACAGTCCTTCAAGAT
GCAAACACCTTTCTTTGTAAGGTCCAAAATACGCCCAGGCGTTCCAACAAGTAAATGGAC
AGGTTGATATAGACGAACAATATCATCCTTCAGGCTAGTTCCACCAGTGGTGACCATAAC
TTGGATCTTCAGGTGTTTGCCAAGCTCTTTGCAGACTTGGGATGTCTGTAGAGCCAATTC
CCTTGTGGGAACAACTATAACAACTACAAATTACAGGAGGCAGCATTTGATTTATTAAAA
CTTTCTAGTACTATATAGCTGATCAATGCACAAGTACACACAAACAAAAACAAATAAAAT
CCCGCATTGGGAAGAAGCAAATATACATGTCAAAGTTTCTATCAGCTATTACAATCAAGG
CAGGGGTAATACATTTGACCCCCAAACAGTATCTATCAGATCAAGTGAGGATGCAGAACA
AACCTTGAATAGCATTTCTGTCCTGGTCGATCTTTTCCAGTGCAGGAATACAAAATGCAG
CTGTCTTGCCAGTTCCATTTTTTGCTCTAGCAAGAATATCACTACCAGTTAATGCAATAG
GAATGCTTTCTTCTTGGATTGGGGAGGGCTTTTCAAATCCTTTCTCATATATTCCCATCA
GGAGTTCACGCTTAAGAAAATAGTCTTCAAACTCATTCCCTTTGGTGGCAGTAACATCCT
ATACAGAGAACGATATTAAATAATAACAACCACACCAAGACACAAAGCAAGGAAGCAACA
TATGAACTAGCTTATTGAACATGACATTAACCAAAGATCCAGGGGGTCTAACACTTGTGG
GGATAAACAATCCATAACCAAAGTTACTTAATATGCAAGTATTATCATTACAATAACATA
TAGGATGAAGTCTAAAATTTATTCATGTTAAAAATACAAGTAGCTAGCATCAAGGATCAA
GTAATGAAATATTGTTTTGCATGTTATGGTCTGAAGATAACCCATGGATTTCAGACAAAA
CAGTGTTCAAAACTAGGACCACCGTATATTTGGCGTGCAATGTAAGGCATCACAAACAAA
AGTTGATACATAAATAGAGTCGTGGCTACAATTTTAGCACACCAAGAAAAAGCTAGTTAC
ACAAAGTAGAGATAGCGACCGACATATTTCAAAGTTCAGGTATTCCTGGACCAGAAGTAC
CCAAACTCCAGAAACAAACACAAAACGAAGAATCAAGATGGCATGAATTACCTCTGTCCT
GAATCGTGTATCTGCGGGTGGAAGCTTCAGTTGGGCCTTCCAATCTTGTGAACTGCACAA
ACCGAGTATAATAAATTAAAATATTGCTAGGCGGTCATCTCCAGTTTACGTTTCTCCACT
TAGAATTGTTATTTATGATCATGTCTAGATTAATGATTCATTACTTACACGATGTTTGTT
AAACTACTTATATTACAGTTGAGCTAGAAATATAGAATTCAGAAAAGTGATGTGGGTTGT
TGCTTAAACATCAGAAAAAGTATCATCTCCCACAGCATTTGGTCGGCTTTCGCAAGCTAC
ATTGGTGATGCTTAAACTATGTGTTGAAGCATCAGCTACCATAGCCTATAAGTTGCCGTC
CAAACTAGTACTAAGCTTCTATCGTCTCACCTAGAATCGTTACCGGCTGCCGCTGGGGGT
GGCGCCACGACCTTGGGCCCGCTGGTCCCGGCCGCGGTGATCTGGTTTCGCCGCAGCCAC
TGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGGTGGTGATTTTGGTGATGCTGCTGCTGG
TGGTGGTGGTGATCTTGGTGATGCTGCTGCCGCTGCGGCTGCGGCTGGCGCTGCACGTAT
TGTTGCTGGTGCGCCGCCGACGTCTGCTGCTGGTGGTGGTGGTTGTTCTGCGACAACGGC
GGGCCACGACCGTAGTAGTTAGGGTTCCCGCCGCGACCGTTGCCGGTTCCGGGAGGGTAC
CTAGCGCGTGGATCCATGTGTGTGAGGAGGGATCAGATCTTGTCAGGAATCGGCGAGAGA
AGGGGCAGATCGAACAGGGACGAGGAGATCAGAATGGAGAAGTGGATTCGTATGGTGGAA
TCAAGGTGGGTGGGCGCCTGGATCAGGCCGAAATTTGAACCCCTTCTGCCTAGTGTTCGT
GCCACGGGGGGGAGGAGGGAGACGACGGAAGGGAAGGGAAGGGAGCGTCGCCGAACGTCT
GAAAGCTAGGGCAGCGGCGAGTTGGGATTGGTGAGGCAGAAAATTACGAGAATGCCCTGC
CAATTTTATCTGGGTACGGGCGTACGGCCGAAATCAGAGCGGATGCCTACCGGCTACCGT
ATTCATCTTAGAAAACACCCCATGTATGAAGCAAGGATTTTTTTTTTCTTTTTCTTTAAA
GCATCTCCAACAGCCGCGTGACACGTTAAAATAAAGATATAGCACCTAAATAATGGATTT
TTTCACGCAGTAGAGCGCTGGCTCCAGCGACCGCTGCAAAAAATTACGCGTACGTTGCTC
TAGCTGACGCGCTAAAACTTTCAACGCGTGCGTGCAGCCGACGCTTGCAACATGTTCATT
TTAACAATATGGTGATATTTCAAACATAAAAAAAGATATAGCATAGTTTAATTGCACGGT
ATATCAACGCCACATCATCATCCAACCAAGTCCAAAATCACCCAACCAAGTTCATGACAT
AAAAGTTCACACAAACAAACGGCACATCAACAATCATGCCGCATCCTCATCATCGTCCTC
CTCTTCCTGTGATTCTCCTTCCTCATCCGAAGACGTTTCTCCCTCGTTCTCTTCATTGTC
ACGTGTCGCATTGTTATTGGGAGCTCGGAAGGTGTTGGCAAGATCTCCAACGACATCAGG
CGAAGGTATGTGAGGCACACCGAAAGACATGTGTCCACCCATGTCATCCGGAGGTGCTCA
CATGCCTCCCATGAGAGACCCAAAACTCATGCCTCCCATGGTAGCACCGAAGCCGTCCAT
GCCTCCCATGATAGTACCGAAGCCACCCATGCCGCCCATGGTACCTCTGAAGCCACCCAT
GCCTCATGTGCCTCACATGCCTTCCATAGTAGCTCCCGTGCCTTTCATGCCTCTTTTTTG
GATCAAGACTTCTTCACGGGCACGATTGGCGTACTCCTTTTTGCTTCTCATCGAGGGTTG
ATGTGTCCATGATGAAGAACAAGTACTTCTCTCATTCCAACAATCTAGTTCGCTTTCCAT
GGTCAATTTCTTCTCCTTCAGTGCCACCTTCCTCTCCTCGGCCGCCACCCTCCTCTCCTT
GGCCGCCAAGCTCCTCCCCTCGGCCGCCGCATCTTGTGTCCTTGCCAGCAGCCTCACCTC
GTTCGCTTCTTTTCTTGCCTTCACAATAGTTTTCATAACATTTTTAACTAGAGCAGATGC
AGATTGTGGTCTACATCGTCGGCATCTGAAAAGTGGGTGGATACAAAACGAGTTCGTATC
ACTTGTCGTTCTAGTCTTTCAAAATCTCATTGAATACTAGTAAATGCTTTCGAAGATAAA
ATAGAAGCAGTAGAGAGCTCAAGTTCACTTCATTCATCACAAGATGCAAATGATAATCAA
AATGGAGCTAATGAGGAAGAAATCACTTCTACTTAAACTTAAATAGTTCAGTACCAACCA
ACACATAAAGCAATAACCAGGTAGATATAATGATAACAGGCAATACGAAGATACCAGCAG
AATCGGAGTCACGAGGCTCGATAATGACCAATGGGTTAGGATATGAGGAAGCTTAGTGTG
GATCATGTGATGGGTCTGTGATTCATGGATGGCATATATGGTTTCCTTCTCCGATGCCTT
AGTCATGCTGGGTGACGGATGTGGAGTTCGATGGCGTGTCCAGGGTGTTGCCTCGGTCTG
ATTCGTTCAACTATAATGGTTTCACCTTTGGTGAGCAACCTTTGAGGTTTGCAAAGCTGC
ATATTTGCGATTGATCCATGTTGAGCACGGGTAAGGAGGAAATCCATCATTTTTTATTTG
GTGGCCGCTATGGTGGTGCCAGAGACACACGACGTGCAATGGTGTCAAATTGAGATGATC
CTTTAGTCTTGATTGTAAGTTTTCTTCTTGGATGGTTTTAATTCGTGTAAAGGCTGGCGT
TATGTAGTATTTTTTTGTTTTGTCATGACGGTATTTACTTTATAATATTAAATGAGACAC
GTATTACTATGCAAAAATGTTTTGCTTCTTTAATAACACATGCAATCGTAGTTGTTCGCA
TAACGTGCATACACTCATCTTTATGCAGATATGCATACACACCCTACTCCTATGAACATC
TTTGATATATGTAAATCAAGGAGCTAGATATACAACGATTGTTATAAAAAAGCTATGAAA
TTAACGTTCCACAAGAATTTCACGCACATGACTTATTGTGGACCGTCGGATCGTGTGCAC
CAATCTTGGTGCAAGGCGCCTTGCCATGTCACAACTGCAACCGTTCGCTCTCGTGGCAAC
CGCGTGAACGTCACCGTGGGCATGGTTCTACCCTATGTTTTGGATGGGTGCTCCCGCGCT
ACTGTATGCCAACATGATGCAAGACTTCGCGCAAAGCACGGGCTCATAATCCAATCCAGG
TAGTGCCCCTGCATGACGGGCATATCCTTCCAGGAGTGTGTCATGTGCTAGGGGGCTTCA
TCACCAAGGCAGGGTCTACAAGGAGTGCTTCATCTGGGTCACTCCGCCGAAGATTACTTG
ATGTACAACCAACAAAGTGACCAAGGTTTCCGTCGACAACGACGACGTCAGTGGCGACTT
CGTCAATCTNNNNNNNNNNNNNNNNNNNNNNCTCTCGAAGGTGCTCATAGGGGTAGAGTG
TGCGTGCATGCGTTCGTAGGGGTGAGTGTACGCTCGTGTATGTGAGCGACTTCAATTGTA
CCCTGCTAAAAAAGTGCCCAAGGGAATGAGTTCTAGATCCCAAGGGATGAGTTGTCGGGA
TCGCGAATAATATACTGACAAATATTTCCTATAAAGACCGTTGTACCCCTTGTTGTGTGT
TGTAGCCCTAATGGCAAACTTGTAATCTCATACCCTACCCCGTGTTTTATAAACAGAGGA
ACCAACCTCCATCGAAGGGTTCAAAATCTGAAATAGATGAGAGATTTGCTCTTTTCCTTG
CCATATGTGTTGCCCCTTGAGAGGGGATGTCCCACGTCACGCCGTCAACGTGCGCGGACG
CTTAACTCCGCCACATGTTTCCGGTGCACCCTATGCAGGTCTATTTATCCTCACGGAGGG
TGTGATACGTCTCCAACATATTCATATTTTTTTTATTGTTTAATGCTATTATTTTATCGA
TTGTGTATGCTTTGTATACCATTTTATATCATTTTGGGGAACTAACCTTTTAACCAAGTG
CCAAGTGGCAGCTGTTATTTTCTATTTTTTTTTACTCTTTGGGAAATATGTATCAAACGA
AGTTCAAACGCGACAAAACTTTTTGATGTTTTTCCTGGAGAGAAAGAGACCATGAAGGCT
TCGGAGGGAGTCTTGACGCCGCACGAGGAGACGACAAGGCAGGGGGCGCACCCTGCCCCT
TGTGGCCCCTTGTAGCTTGATACGTCTCCAACGTATTCCTACTTGTGAACTGCGTTAGTT
TTTCCCCTAGGAGGAAGGGTGAAGAAATATAATAGCGATAAGTATTCCCCTTAGTGAGAA
CAAAATTATCCAACGAGTAGGAAAATCAAACAAACTCTCATCGTCATCACCTACACACAC
ACAACCAAATACATGCACCCAACGCAGACAAGAGGGTTGTCAAGCCCCTCGAACTTGTTA
TTGTTGGAAATATGCCCTAGAGGAAATAATAAGTTGGTTATTATCATATTTTTTGTTCAT
GATAAACGTTTATTATCCGTGCTAGAGTATTGACTGGTAACTTAAATACATATGTGGATA
GACTAGCTTGTTGATCAAGGATGGTTAAGGTTTCCTAACTATAGACATGAGTTAACATTT
GATAATGGGCTCATGTCATTAGGAGAATGATGTGATGGACGAGACCAACCATAAGCTTAG
CATATGATCATTTCACTTAAGTTTATTGCTCAACTTTCTTCATGTCAAATATCTGTTCCT
TAGACCATGAGATCATGCAACTCCCTCACACCAGAGGAATACTTGTATCCAAACATCACT
TTGTAATCGGGTGATCATAAAGGTGCTCGACATGTATCTCCAATGGTGTCTGTTGGGTTG
TAATGGATCGAGAATGGGATTTGTCACTCCGGGTGATGGAGAGATATCTCTGCACCCACA
CGGTAATACATCATCACAAGAAGCTTGCAAGCAATGCGACTAATGAGTTAGTCACGGGAT
CTTTTACTACGGAATGAGTAAAGAGACTTGCTGATAACGACATTGAACTAGGTATGGANN
NNNNNNNNNTCGAATCTCGGGCAAGTAATATATCACTGGACAAAGGGAATTGCATAAAGG
ATCAACCAAATTCTCAATATCGTGGTTCAAACGATAAAAGATTGTCGTGGAATATATAGG
AACCGATATGGGCATCCAGGTCCCGCTATTGTTTATTGGCCTCAGAGGTGTCTCGGTCAT
GTCTACATGATTCCCGAACTCGTAGGGTCCACACGCTTAACATTCGATGATGCTAGAATA
GTATTGGGTGAATGGGGGAGTCACATACCAAGGAGCAATTCCTCAAAACATTTTAGGAAA
CGTGGTTCTGAGCAAAGAGATCAATTTTTTTTGTTTCTCGAGGAAGAACCAGAGAGAGAG
AGAGAGAGAGATTTTCCTGGAGGTAGGTGACGACATGAGCTAAAGAGATGAGGCAGGGGG
TCCTATGGGACCCATAAGGCATCAAGGCGCGTCGAGGGGGGTCGCGCCCTCTTGCCTTGT
GGCACATAGGTGCACCTCCCTACTGCAATTTTTATGTGAGAAATTCTGAAATATTCCATC
AAAATCTTGTTAAAATTTTGTGGCAATCTGAAACTTTTCATTTTTGGGTCATTTTCTACT
GCACGGAAAAGTAACAAAATGGGATAATCATGGCATTTTGTTTTTCTATAGCTAAGAGAA
CAGAGAATAAACTTGTGATACAAAGAATTGTGTATACTCAATTCATTAATCACATGTCTT
TCAAAAAGGATCCGGATCCATTAATAAGGTTAATCAAGTCTTATTAACAACCGTTTCTGA
TTAGAATGAAACCGAAGAATTTTCATATATCACTAGGTTACCTCAATGGGGATTTCCCCA
ACAATAATATTGTAATATTTCTTCTTGGCAGTTCATAGAGGGATTTGGAAATCTCCAATG
ATAACTGTGGCGCAAGGCTCAATGACATTAATATTATNNNNNNNAGTTTGCTTCTTCGGA
AAATGCACGATATGTTGCTTTCCATTGCCATGAAAAGTAACTTTGCTTTTGTTGCAATCA
ATAATAGCCCCTGGAGTATTTAGAAAGGGTCTACCANNNNNNNNNNNNATATTGTCGTCC
TCGGGCATATCAAGGATAATAAAGTTTGTTAAGATAGTAACAATTGCAACCACAACATGA
ACATCCTCAAAATTCCAATAGGTAAAGAAGTGGATTTATCATCCATTTGCAAAGATATCC
CACTAGGTGTAAGCTTATTCAGATCTAGTCTTTTATATAAAGAGAAGGGCATCACACTAA
CACCGGCTCCTAAATCACATAGAGCAGTCACATAGAGCAGTTCATAGAGCAGTTTTAAAG
AGCAGTTTTAACATACATAGTTTCTTTTAATAGAGCAAGGTATAGTGGGTATGCCATGAT
CTCCCAGCTTCTTAGGCACTCCACCATCAAAAGAATAATTAGCATGCATAGTAGCAATTT
GAGTTTTATGTATTTTTCTTTTGTTGGTAATAATATCCTTCATATACTTAGCATACAGAG
GCATTTTCAATATATCAATCAAGAGAGTGCACAAAAAGGCACGTCTAATCTTTTCAACAA
AGCACTCAAATTCTTCCTCGTCCTTTCCTTTAGATGGCTTACGACGGAAGGGCATGGGTT
TCTGAACCCATGGATCTCTTTCTTTCCCATGCTTTCTAGCAACAAAGTCTCTTTTATCAT
AACGTTTATTCTTAAGAGGTGGGTTATCAAGATCCTCAACAAGTTCTATTTTCGCATCAT
TATTAGATTCCTTATTACTATTTGGTGGATCTTCTACACGAACATCATTATTGTCATTAT
CATTATCACTAAGTTCANNTTCACTACCAGATTGTGTCTCAGCATGAGAAATAGAAACAT
TGTTAGGATTCTCACCAGGTTTCGCAATGTGAGGTTCACTAGGAGCATGCAAAGTCTTAT
TATCTTTCTTTTTCTTTTTCTTATTAGTGGGACTAGGTGTATCGTCATTAATTCTCAATG
AATCATGTTCTATTATTTTAGGGTGACTGATACGTCTCCATCGTA