Map Locations of contig_55034 (10809 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_55034

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68608 1 153 bp MLOC_68608.1 Available Available None
MLOC_68609 2 1293 bp MLOC_68609.1 Available Available None
MLOC_68610 2 2177 bp MLOC_68610.1 Available Available LOC_Os08g02230.1, FRAME:-3, EVALUE:0.0, 13108.m00160 protein FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed





CDS Structure of MLOC_68608






CDS Structure of MLOC_68609






CDS Structure of MLOC_68610






Contig Sequence (10809 bp)

>contig_55034 10809 assembly3_WGSMorex_rbca.fasta
AGCGCGCAGAAAAGGCTAGTATTGATATGTGGGGCCAGTCTAGATCCCGCCAGAAGTAAC
GACCGTCGGCGGGTGTGTCCGGGGCGTTACAAGAGCATCCTTCTAAGCATTTCTTTTTTT
CAAGGAATAATTCTTTCGAAAAGTTTTAGAAACGGAGCCTCGAGCAAAAGAGATCAAAAA
TTGTTGGTGAATAAGCAAAAAACACGACCTATATATGGGCCCCACAAGCTGCACACCCCT
GGGTTGTGTTCAACGCTAAATATTCTTGTTTATTCAGAAAAATCATGCTAAATTTTTAGG
GCATTCTAAACACTTCTATTTTTGGGTCAATTTTGTTGAACTGGAAACTCAAGGTATTCT
AAATTATTTAAAATTATTAAAATAACAATAACGGAGGGTAAAATAAAGTTACAGAAAGTT
GTGCTTATGAAACTCAATGATTATATGCTCCCCAAAAACAGTTCATTAACAAGATTGATC
GAGTCTTATTAACAACTATATCTAGTTGACATAAAATTACAACGGTGGCATCAACTCAAG
ACGAGTTTGTGAAATTAAACCCATTAAGCATCGCATGAAGTGTGGCCAACCAGCTATGCC
ATATGGTGCAAGTTGGTTGACCGTGGTGAGAAATCTTTTAGAATTTTTTTAATGAAGGTG
AGGATTATGTTTTAAATGTATTGTTTTTCTGTACGTAGATGGAAGTGAGGACCTCTGGTA
TTTTTTAAGTGGAGGGTTTTGCAAAGTGGCACTCACTGGTAGGTTGTAGTGGTATTTTTT
CTTTTCTATTCTTTTTTGGATGAAGGTGTGGATTTTTTTTCCTGAGATAATTTTTTAGAC
AGAAGCGAGGACTCTATGTATTTTTTAAAATAAAAATGTGCGCACAACATCGTCTTAAGC
GGAGCCTTCGGATGACGTCCCAACCACTACTAATCTACTCAAGTGCGAAAAAGATCAAAC
ATTGTATTACTAGCTTTTGTGCAAATATAGAAGAGGAGCCATGTTAAATAACCTATTTAC
TTCCCTTATTTCAAGAAAAGAAAACGTAGGTGGGGTCGTTGGCTAGTTGCATAAAAGGTA
CAAGGATCGAATCCTGTTGTGCATACTATTTCATTTTATTTTTTGCATGAAAACACAAAC
TTTTCATGTGAAAATCGGGAGTCGGAGAGGGAATCGAGGGAGTACTTGGACGTGTTGAAG
CAAACCGAACATTCTGATTTTAACCTTTTCGTACTACTATTAAATAGATGGATAGATAGC
AATACTCCGAGGGAGTAGTAACGATAGCCCATAACATAGTACAACCTAGTTCGTATATCC
GCGTATTATACGAAGCAAAGACGATCATTATTCATAGGTCTAGCGAGTAGTGGGGAAAGG
AAATTTGTTATAATCCCTAATAATCCTTGATGAAGGAGCATACTCGAGCCTCCTTGTACA
CCTTTCCTGGCCTGCAGAAGTAGCCCTGCTCCGGAGCACAGTGTGAATCATTGGAGCAGA
CGCAGAGTCCTTCAATGGCGCAACCCTTCTTGATGATGTTGGGGCTTCCACTGATACCGA
GCACCTCGTCGGTCCACTCGCTGGAGAAGAGCCCCTCAGGATCATACCTATCTTTCACAC
CAAGGAACTCACGAGCCTTCGGGTACCTTGCGATGGCACCGTCGAAGGCCAAGTTGCGGT
TCTTGCCCCAGTGCGGGAGGCCGCCGTACTTGTGCAGCGCCATCTGCTCGATCTCATCCA
CCACGTCGGCATGCGCCCGCGGCATGCCGTCGGTGCGGCTCCGGTAGTGGACGATGTCGA
TGTCGATCGAGTCTTCTGGCTTGCCAAGGTAAGCCGTTGATGCCTTGATGTATCGCAGGA
GCACGCCCACCCTGGCGTCGACGGCGGCGCAAAACAGGTCCGGGTTGAGGTCCCGGAGGC
GTTTCATGTCGGCGACGAACGCCGGCGCCTTGGAGAGCGCGACGCTGAAGCCGGAGTTGT
AGTAGAAGGAGCCTCGGATGCGCGGGTCCCACGCGCAGGCGGTGAGGAGACCGTCGTCTG
GCCCGTTGAGGCATGCGCCGGATGCCTGGATGCGGTGTTGGTACCCCACCACCGGGTATC
CCGTGAAGGCAACGCCGTCGTTCGTGAAACCGTTGGACGAGCGCTCGGATGTGGCCGCCT
GCAGCGCCGCTGCCTCGCACCGGGCGGCGTCGGTGCTGTTCTCCTGCAGCCGCTCCTCGG
CAACTCTTGCGTCGATGAGCCCGCGGGTGGGACTGGGGTGAAAAAGGAGCAGATCGTTGA
GGCCATTGCCGGGGGTCGAGACGTCGACCCGGTCGTCCCGGCGGTACACCACCTTGCCCT
GGTGCGGCAGCCATGTCATGTCGCCGAACTCGTGGAGGTCGCCCCACACGGCCACCTGCT
CTTGGAAGTCTGAGTCGTCGCGCCTCACCAGCGTCACCGACCGCTTGAACAACGGCTGCA
TGGTCAGGGTTACCTGAGAGATGACGCCGAGAACCCCGAGGGAGACCTTCGCCGCGTGCA
GGTCCGGGTGATCGGCGTCGAGCTCCCTCACTACCGCGAAACCCTGGCTCGCCGGCGCCG
GAGTTACGATCCTCATCCCGACCACGTACTCGTGCACAGCGCCTCCCTTTCCCCACAGCG
AGCTCCCGTGAGCTCCCGTGCCCAAGAGGCCGCCGATGGTTAGGCCGTACCAGTAGGGTG
AGTGCGGCAGGGACAGCCCTGCTGCGGCGGCGGCCTCGATCAGGTCCCGAAGGACCATGC
CGCTCTCCACCGTCATGAGCCGCTTCGCCACATCGATGCACACCGTCCGGTTGAGCCGCG
CCGTGCTTATGATCGTACCGTCGTCGCCGCCGGGGCAGGCCAGCTTAGGGATGCTGTGGG
AGTGCTTGGTGGCCACCTTCACCTTCTGTTTTGTCGACGCCACGGCTGCCACGGCGGCGA
CCAGCTCCTGCTCGGTCCCCGGGTAGGTGACCTTGGCGGCGCGGCAGATGGTGCGGTCCG
TGAAGGAGCCGTACGTGTTGGTGATGGTGCAGTTGGACGTGCCATGCATGCAGTTCACCG
GGTCCGGTGGAGGGCTGCCGCCGGCGAGGTGGACGAGGACGACTGCGAGGGAGAGAACCA
TCAGCAAGCTTTCCATTGCTCTTTTCCCACCTCGTGACACCGACATTGTTCTCTGAATAC
CTGTATCTGTATGTACTAGCTACAGCCTGGTTGTGGCCAATAGAGAGAAGCTAGCTAGGG
CTTAAATAGGCATAAGGTCAAGGTCTCAGCATGGTGCACCGCTTCAATCTTCATAATTTC
ATATCATATCTGTGTAGACTGTAGACACGTTGGATTCTGACTTGATTGAGTATCTGACTT
TTCTGTTATGTAACACTTCCACGTTTCCGCGTGAGTGAGTTCAACAAGTTAACCGAGAGA
GAAGCTGCTAGCATTGCTTTTGTCAAAGTCTCATTACGCATGGGTGGACTAATGAATGGA
TGCAATAGGTTGTACAGCTTAATTTTCTACGCATGCATGCAACCTGTGTTGCCAAGCTAC
ATTATTATATACTACCCCTCCGTTATACAAACTAGTGTATGATACCATATCCATAATGCG
TAGTATCATAGATTAGTATCATAGTGTAGTTCATTTATTGGCATGCAAGACACATAGTAG
CACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTCTTCATTT
AATTCCATGCCACCTCATCGAAAGTGTCTAGTTGGCATGCATGATACTANNNNNGATACT
ACCATTACGGGCAGCCTAAATCGTAATTCAGTGCTACATACATCGGTCTGAATGATATTA
ACTAATACTCCATCCGTCTTAAAATAAGTGTCGCTGCTTTAGTACAAAATTTATACTAAT
TTAGTATTAAATTTGCGTCACTTATTTTGGAACAAAGCGAGTATATATGAAACGAAAGGA
GCATATATATATATATAGAAGACTACTCCATCAGACTAATATATATGAAACTAAGGAGCA
TATGTATAAAAGGATATATAGGGTGTGTTCAGTTTAAGGATAAGGTGTCATCGGATGGGT
TGATTCCGTCCCTGACAGCCCATCCTCGTGTTCACTTGTGTTTCTATCCGGAACCGAACC
GTCCGCGTGCAATGTATATTCCCTCAAGATGTTTCATCTATCGATGCTTGGGAAACGTAG
GAACGACCTCGTTATTCATCGATTGAACGCAAAAAGGAAAAAAAACCAAAGCATCACCCC
TCATGCCCCTCTCCCTCTTCCTCTCGTTCTTCCCTCCCAGCCGTCGCTCTCCCTCTCTCT
CGCATCTGCTCTCCACCGACGACCCAAGGGAGACGACGGCCAGCGGCGGGGAAGCAACCG
GACGGCCAGCGACGGGGAAGGAACCGACCGACCTGCAGCGCTCCTCCTCTCGTCCTACCC
GCAATACCTCCTCCTCCCAGCCCGATCCGAATCGCCTCCTCTACGCCGATCTGCCGCGCC
CACCCTATCTTCCTCGAGCTGCAGGAGCTCCTTCTCCAGAAGGTATGAATCCCATTGGCC
AGCACCATCCCTTCCCCCTGCCAAGTTTCTTCTACACTTGGCAAAGCTAAGATCATCCTA
ATCGAATGCATACATGATGTACTACCATAGATAGTCAGATCTGTGTTAGTTTCATCCATG
ATATACTTGTTATGTTTGATAGAGTCCATGCATTGTAGATGGTCAAGAGGATGAATAAAA
GGAAGAGGATGATTAGGGGTGCTGCTGATTTTGTGGTTCTTGATGCAGTGGCCGTAATTG
TCCGTGCCATAATAAGGAAGAGGAGAGCTCGCATTTCCTATGACCCTATGCATGAAAGAG
ACCGGCAAAGATTTGATTATCTAAGTAGCAAAATTTGGCAGTGTGACGTGAAGTGTAAAA
ACATGTTGAAGTGTAAAATCTGTTATATATTTGTTTGCCTTGTGATCATATACTATTAAA
TTGCTTGTTAAAAATACAAAGAAAATGCTGCCAAAATTTTAAATTATATGTTGTCCAAAT
CTGAGATATATATAAGTACATTAGAGGTAATCTCATCATTCATATGAAGAGGTGAGTGGA
ATGAGATTCTTTTCATTTTACCTCCCAAACCAAACACATGGATGAAATCAACTCATGTCA
TTTTTTATGTCCAACCGAACACAAAAAGGAAACCAACCCATGCATCTGGAATGGAACCAT
AACATTTCATGTCTTTTGATCCTCAAACCGAACACATCCTAAAAAGAGTATACAAGAAAG
ATAGACCTAATGAAAAAAAAAAGTATGTAGGGTCTAGTTTTGTCACAATGCCTGTTCGAA
ATTTGCATGTATGTCCAAAAATTAGTCGGCAGGATTATTCGAAGGGATAAAGGTCTTGTA
CCGTTACAAACTTTGTCAAACAATGTTATCCTTTAGGTTGGCTGTCTTTTCTGGGTGGTT
GCAAGTCAAAGCTTTGAAATAAAAATAAATGAAAAGTATAGTCTAGCGTAATTGTGCGGT
TTTCCATCCATGCGTGCTTGTGCCAAACTGTGTGCATGTGTCCGCGTGTGCGTGTGCAAA
AATGCTACACACACGGACTATTACGGGCCATTACAGACTCTTTCCTACTAATTAAACTTG
GCATTTTTTATTTGGTGTCACATGCGTTAGTTAATATGCATTTTTGTTAACTGGCGCCTC
TGACGTTTGCACTGGGCCGGCCCGTCTAGGCATTTGTGATGTTTGTTTTTTAAATATTTT
ATAAACTTATTTGAATATCGATGAAATTATTTAAATCTCCATGAGTAATATTTAAGTTTG
ATGAAAATTTATAATATTGATGAACTATTTCGAAATTTGATGAACACCTTTTTGAAAATG
AATGAACTTTTTAAGGATTTATGAACTTTTTTCAGTCCAATGAACTTTTAAAAAAAATAC
ATGAACTTTTTCAAATTTATTTAAATTTTTAAAAATTAAATGAACTTTTCCTAAATTGAA
TGAACTTTTCTTCATTTTCAATGAACTTTTAAAAAAAGTTGATGAGCCTTTTTTAAAGAT
ATGAAGTTTTTCCAAATAAATAAACTTTTTGTTTCTAAATCTGTAAAACTTTTTTTCATA
AAAAAAAAATAAAAAAAAAATTGGACAACACTCTAGTGGGCCGGCCCATGCTCGCGGTGT
TGCAGGCGCCGGAACGTTAATGGGTGCATGCAGCGCTGCATAGGAGCACAACTTGCCCCC
TTTCTCGCCCCCCTGATTTTCAGCTGGGATGGGCCGCTCCCCTTGATTTACACCCAATCA
AAAACGCCCACCTCGGGCTCTCCATGAACCCTGTAAAAGAGATGCCCGTGTGTGCAGCAT
TGCTGTGCGGGTGTGTGCTAGTGAACGAGGGGATAAAGATTTTTTATAAAGATTTTCTGA
TTAGCCAATAATAAAAAATGCTAGACATACAGACTTGTATACGGGGTCTACACGCTCTTT
CCAAACTTTTTAAACATGCCCCCTGATTTCAATGGGGGTGGGCCCATACCTCTACTAATG
ACGAATTAGAAACTGCCATGACACCTTGTAATCCCTTCATCCCGTAACCCTCCTATAGTG
TAGCAAAGCTCGCCAATAATACAACTTATTTACTAGGTTGCACTTTAGAAAAGTGAATGT
TTAAACTAAAGTTACATTTTCTGAATCGATTCTGACTTGAAGAAATCTTAGTCGGCTTGA
GATTAGTAAAACCCATATATTTATTTCTTTTCTTCATGGATTATAGTGCATCAGTTTGTT
GACACCAAAAATTTGTGTAGTCATCGGCAATTTTCTAGCCTAACACTTGAATTATATTAA
ACAAAAGTATGTTTCGGTCCCTCAAATACACAAAAAACATACCTTGATCCTCAAGAATTT
TGGGGAGACATTTGGTCATTCAGGTCTCAAAACCGGGCAAGTTCCATCACAATCCTAGTT
TCTACCAAAACCGGCCATGTGGGAGCAGCTTTCCCTCCTCATTTGCCACATAGGATGAGT
TGTGGGTCAAATAGGCTAAGCGGAGGCTCTCTCTCTCCCTCCCTCACTCACTCACTCCCT
CTATATTGTCCCTTCTTTCTGAAAGACTAGCTTCTTTGTTAGCAGCCATGGCTGATTCGT
TGGTGTGGAGCTAGTGGCGGTGCAAGCGACAACAACACCATTGACATTGGTTTCTACACG
TGAGTCCCACCTTGACTCAGATTGCCGCAGTGGCGCCCAGAGGGGAGCACACGGCGACCG
GAGGAGAAGGGAGGGATAGGTGCATATGTGTGGGAAAAGGTTGACAACGATGATGCAAGA
TGCAAGGGGTAAGTGGCTGCCATAGTCGGGGTGATTAACGCTTGATTCCATCCTGGGCGA
CAAATTAAGCAGGGTTGTATCCAAACAGATCCATCGTCGTGGAGGCGCGGAGGCCATGGA
TGGCGGCATCGAGGGCGGCGTTGTTGGGAAAAGAATCGGCGGGGTTGTTGAATGTTTCCA
TGGGCTAGGTGAAGCTTGAGAGGAGGTGGTGGGCATGACGATGGGCTGGTTCCTGTGCGA
AAGGCAATGATCGATTCCTTAGTGTGCACTGATAGCAGTGTAGGCGAAGACAACATAGTT
GACAGAAGCTACTAGAGCGTGGCGTCCTCGCCTTTCTCTCCGGGGGTTAGCACATGGTGG
TCAAAGGAGAAGGGAGGGAGAGTGGAGATCGGGTTGCTCGATGGGTGCATGAGGTGGTTG
GAGGAGCGCAGGGTGGGAGAACAATCACGATGACGAGCCAGCACGAAGGGGGTCAGGGGT
GGGCATGGTCGGGAAGATTACAATTTGATCCCATCATGGGCGGCGCGATGTGGTTGTATC
CTCAAAGATTGATCACCAAGAGGCATGGAGGCTGAGGACGGCCCGAATTGAGGGCAACGA
TGTTCGGAGTTGATGCGGCTGCGACGCCGAATGCGACCTGGCCTAGGTGAAGATCTAGAG
GAGTTGGGTGAGCATGAGTGGTACCCCGGCTCAGAGAACCGGATTACCAGTGTTTCTAGC
ATAAAGATCATGTCTTCTGAAAACACACAACAACTTGAAACAGAACAGAACTGATTTTAT
TAATAGCTTTCAGTGGTTGTTTGGATAGAAAGTATTAACACTGGGTTTTAAGAAAACAAG
TTTAAAGCTGTATTTTTTGCTTAAACGGGTATTACTAGTTTTTCTCCGCAAAACCTATTT
AAAAAGAAACCAAGATGAAATTACAAGTTTAAAGACTTATATTTTTGCTTAAAAGACTTA
TATTTTTGCTTAAACGGGTATTATAAGTTTAAAGACTTATATTTAGGAACGGAAGGAGTA
TTATATTAAAAAATATTATATTTAAAAAGAAACCAAGATGAAATTGCACTGGGCTACCCT
CCTCCGCTGGCCGCCAACCCCCGCCGCATAACCAAAACTCAATCCCCCACCGCGCAGCCT
CACCGTCGGCATGGAGGAGGAGAGGACGGAGGCGTGGTGGGCCCGGCGCGCGTGGGCGCT
GCTGTCGGCCGTCCGCGAGCGGGCGCCGCTGGTGCAGTGCATCACCAACCTCGTCTCCAT
GGACATCGCCGCCAACGCGCTCACCGCCGCCGGCGCCTCCCCGGCCATGCTCCACAGCCT
CCGCGAGATCCCCGACTTCACCCCTCGCTGCGACGCCGTCTGCATCAACGTCGGCACCCT
CTCCGAGGAGTGGCTCCCCTCCATGCGCGCCGCCGCCTCCGCCGGCCGCCCCTGGGTGCT
CGACCCCGTCGCCGTCGCCGCCTCCGGCTTCCGGATGGAGGCCTGCCTCGAGCTCCTCGC
TCTCCGCCCCGCCGTCGTCAGGGGGAACGCGTCCGAGATCCTCGCCCTCGCCGCCCGCTC
CGACAGCTCCTCCTCCTCCTTCAAGGTACCTGAACTTAAATCCATTCCTGTTAACTGATT
GTTCATTTCCAATCCAATCCTGGCGGTGACAAACACAGAATTTTACCTAAATAGATGATC
GATTCTGTAACTGATTTGCTTCTGGTATGTTATAAACTGATTTGATCCACGTGCTCCCGG
TACTGTTATAAACTGGTTTGATCCACGTGCTCCCGGTACTGTTATTTTGAACGACGGTTG
ATTCTTCAGCTCATTTGGTGTCATTCAAATTGACTTGCAGTAGATGTAATCATGTTGGTA
ATTTCATATTTACAAGAAAAACCGTAGCCTAGCTATAAGTGAAAGTTAAAATAAGGTTCA
AACGTGCAGAAAACAGAAAATGGCACTACTATGGAAAACATAGAATGGCAGTACTACGGA
AACCGTAAAGGAAAGGAATGGGGCAACAAAGCGACTAATTACAGTAGCTGTGTCCCTCCT
CCCACAGCATTTTTCCTACAGGATAAGTAGTTTGAGATGTAAGACAGGCGCTATGCCAAT
TTCATTAAGAAGGAAAATGGAAAACAATTTCTCAGGGCGATACACTCCAGACATTATCCT
GTCTCTGAAGAAATTTTAGACTGCTTGCGTTAGTAATGTTTTTTTTGCATTGATTCCAAA
ACGATTGCCTGATTGCCCTATCGCCCTGTTATTTGCTGCTTACAGTATCTTTCTTGCTTC
TAATGGCACTAATACTTGTTGGTAACTGCAGGGCGTGGACAGTTCACATGACTCGGGGGA
GGCCCTGCAAGCCGCGAAGGCATTGGCACGGTCCAGTGGGGCAGTCATTGCAGTATCTGG
AGCCGTTGATTTCATCACCGATGGTGAGCAGGTCATCAGTGCTAGCAATGGTGTGGCAAT
GATGCAGAAGATCACGGCGACAGGGTGTGCTGTCACTGCTCTTATAGCGGCTTTTGTCGG
GGCGGATCCCTCGGATGCTCTGGCCGCAGCAGCGTCTGCTCTTGCCATCTTTGGACTGGC
CGGAGAGATCGGGATGGAGTGCGCTAAAGGGCCTGCCTCGCTCAGGATGCACCTCATCGA
TGCTCTCTACGGCCTCGATGAGCAGACCGTCACATCAGCGGTCAAAATTGCCCTAGTGCC
GTAACACATGCCTGCTGTGGCTACCAATGTCTAGCAAATATATACAGTCTGTGGTCATCT
GCAGGGTCCTGTAAAACCATGAAGCATATCAGATCGGATTTGCTGTTCCCGTCTATGTGT
ACATGCCCCTATCAATAAATTGCCGGGTGACCATCGATCCAGACTGTACTAACTACCAAG
TAATCCCTCCGTCCCATAATTCTTGTCATTGTTTCAGTTCAAATTTCAACTAAAACAACG
AGAAGAATTAGTACATATTTGTGAATTGTGATGCCAAAAAGATTGGAGCATCACGTGCCT
ATGCTTATGAATCCAATGATTTGGCAGGCCCAGGAGGAAACTTCAAGAAGCCACGGCAGG
CATTTTGTTGTGCTTCCCTGTGTATTTTTCCTGTCAGAGATGTGTGCTCTGGGCATCCAG
TTCACGTAAAAGTGTGCAGTTCTTAGAGTTACAGTTGTCACAGTTTTCAGTTCATGCACA
AACTTGCACTCTTCACATAAAAGTGTTTTGTTCCTACAAAATGGACAGAAATGAAGAGAT
TCAGGATACAATCATAATTAAGATAGTTTTTTTTTTTTGAAAAAAGGGGAAGGCGAGTAT
AAATTTGTGAAGCATCATCATGTTGCACACACACAAATCTATATCTATACCTAATAATNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCACCGCGGTATTTTTATAAAAAATCCCCTGTAA
TTTTTGTTATTCAACCCGTGCTCCATCATTTATCTGCAANNNAAAAGGAAAAAACGATTC
GCTGCAAAA