Contig Data
morexGenes
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Map Locations of contig_55019 (4317 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_55019

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68598 5 3251 bp MLOC_68598.4 Available Available LOC_Os05g04740.1, FRAME:+3, EVALUE:3e-90, 13105.m00487 protein helix-loop-helix DNA-binding domain containing protein, expressed





CDS Structure of MLOC_68598






Contig Sequence (4317 bp)

>contig_55019 4317 assembly3_WGSMorex_rbca.fasta
CGACGAAGAAGACGGCCGGCGAAGGGAGTCACGGCCCGCACGGACCAGCTAGCTGCCCTG
CCGGCGTCCGACGAGTGGGCCGCACCGGTGAGGATCTGACCGAGGCGGCTTCTTGGTCGG
GGGCGTGGGCGTGGGAAGCAGTCGGCTTCCCGACGGCGGACGTGGGAGTGGGCAACGTTG
CTGAGAGTGGACGGATGTGGGCGACGTTGCTGAGAGTGGGCAGCTGGCAGAGTTGCCGGC
AAAAATGGGCGGCGACGACGACGAAGAAGAAGGAGGGCGAGGGTTGCTGTTGGATGGGGG
GAGGCCAATGTGCCACCGACCAGCGAACTCGAGGGGAGGAGAAGGCGAGCGTGCGTGCGT
CCGTCGTGTGTTCGCGCCGACGTAAATCTGGCTCAAAAATGAGCCGGGAATGGATCGCCC
GTGGACGAAAAACAGACTCACGTCCATTTGGGTCGGCGCGTTGAGCCGCCTTTTGTGTCC
GTGTCGACTCAAACAGACGACGATAGACAAAATGGATCGCCCCATTAAAATTGCTCACAC
CACCACCGCGGTCGCCACCGGACCATAACCATTGAAAATGCCGAGAGGGGCACCGACGGT
GAGTTGGTTGTGGTGCCGCCGCCCGTTGTAGGTATAGAACCGGACGCAGGCCCTCACAGC
CGGACACTTGCATGCCACGAGAGCACATACATACATGTCGAGCTACTAGCCTGTTGGTGG
GAGGAAACGCGGGAGCGTCCGCAAATGTTATCCGTCCTCGCGTGCAAGCTGAGCCCCTGC
ACAGGTGGTGGTGCAACCGTGCAAGAGAAAGCCACGAGGATAGGCAGCAGGCCAGTAGCC
ACCGGATCGATATCGCTCGGAGTGATGGGCAGACAGTGCGGAAACAAACAGGTCGTGGTC
TAGCGGCACGAGCTTCCCCCCTCTCCCGATCGTCGTCCAGGCCCGCTATATATTCGACGG
CTCGGCGGTCGCCCCCCCACTTCGTCCTCTCTCCCGCTGCCCATCCCCCACCCGTGCCGC
GTCCGTTGGCATCAATGGCGACGCCTCGTTAGGTGGCGCGTCGCTCTTCCTTAACTGCTC
CCCCCTCACACACGCGCATCAGATTCAGACGACTCTGCTTTGAGTTGGTGCGCTCGCTCC
TCCTCCTCCCACCACCCCCTCCTTCCCTGCAGGCTGCAGCTCCCCCCGCTCGTGACTCGT
GACGGGAAGAGGAAACATAAAATAATACCGCGCCGACCGCGGCGAGGCGTCGGCCGAGCT
ACACCTGTCGCCGCAGGAGCTGGAAGATCTCCGTTTATATACCCACACCGGCCGGGGATG
TGAGTTTCTTGACGGCTGACCCTGCTCTTCCTTTGTTTCTTGGTTCTTGGTTCGCCGGCC
ATTGCTGGCTTAGCTTAGCTTTGCTTTTCTCGGGCGTGCGCGCGGGTTACTGACGATGGC
CTGTGCCTGATGCTGCTGCGTAGGAGTGAGCCGGGCAACGAGCTGGAGGAGCTGCTCTGG
GACAACGGACCGGCGCTCCGGCGGGCGGCATCCCCCTTCCCGCCCTTCTCCTGCAGCGCC
GCCGGCACTGCGAAGCCGCAGGAGCTCGCCAAGCACCCCGCGATGGCGCAGGGACACGAC
GACGACGCCGTGCCGTGGTTGCAACATTACCCCATCATCGGCGTGGACGACGACGGCGGC
GGCGCCGACACGACCCCGATCCCCCAGGAGTACTTCTCCACCTTGTTTCCCGTGTTCTCC
GACCTCACCGCTGCGGTGGCGAGCAGAGATGCCGGAGCGCCATCGACGTCTCACGCGGCG
GTGGCCGTGGAGCCGCTACCGGAGCCACCTGCGCCCCCCAAGCAGCAGCAGCAGCAGCCG
CCGCCTCGGTCGACCGGCGAGGGGGTCATGAACTTCTCCTTCTTCTCGAGGCCCCTGCAG
CGCTCGCTGCCGCAGGCCAGCTTGAGAACGTCCGCCGCGGGGAGCAAGTCCGTCGAGTCG
ACGCTGCTGCAGACCAACAGCAACAGGCTAAGAAGCACCCCACTCTTCTCGGAGCAGAGG
ACGGCGTGGCTGCAGCCGCCCAAGGAGTCGCCCGCGCCTCGTCCCCCGGCACCGCCAGTG
CCTGTCCGGCATGCCGCAGAGCCAGCTGCGGCGTTACCCCAGAGATTGCAACCGGAAGCG
AGGGCTGCGGCGTTGCCCCAGAGATTGCAACCGGAAGCAAGGGCTGCGGTGTTACCCCAG
AGATTGCAATCGGAAGCGAGGGCTTCCGAGATGCCACCGCCGCCCGCAACGGCGACGACC
TCGTCTGTCTGCTCCGACAACGGTGAGCGGAGCCAGCTGAAGAGGAGCAGCCACCAGACT
CTGGAGTGGTCGGTCAGTCAGGACGACGAGGTAAGCTAAGTGCTGGACACATGGTTATCA
CCACGAACGCAGTATTGTGCTTCTTGTTTCATCGAGATCTCAGACGCAATCTGCCTGCAG
GATCTTGACGACGAGGCCGGCGGGCTGAGAAGGTCGGCGGCGAGGAGCACCAAGCGCGGC
CGGACCGCCGAAGTGCACAACATGTCGGAGAGGGTACGTTCCCGAACGCGAGCACGCGCA
CAAAACCGAATAGATATACACCGTACACCTAAGCGGCATTCTTCAAGTTGCTAAATTTGT
ATGACATTGCTGTTGCAGAGGAGAAGGGATCGGATCAACGAGAAGATGCGCGCCCTGCAA
GAACTCATCCCCAACTGCAACAAGGTATATGACACACTAACCTTCGCAAGAAAGCTGAGA
AATACTTGACAAGAGCATAGTTTAACATGCAACGTTTGTGGTGATGAATCAAGATTGACA
AGGCGTCGATGCTGGAGGAGGCCATCGAGTACCTCAAGACCCTGCAGCTCCAGGTCCAGA
TGATGTCGACGATGGGGACGGCCGGGATGTGCATGCCGCCGATGCTGGCAATGCAGCACA
TGCAGATGCCCCCGATGGCGCACTTCCACCACCACCACCTCGGCGCCATGGGGTTCGGCA
TGGGCCCCTTCGACCCGCGCCTCGTCGCCGCCGCTGGCGCCGCGCAGTTCCCTTACCAGA
TGATCCCCGGCGCGCCCATGTTCGGCGGCCACGCGATGCCTGCCCCGCCACCGTTCCACC
AGGCGGCGGGCGCTCACATGGCCGCCGGCCCCGTCACCAACGACGCCCCCGCAGCGCAGG
CCGAGCAGGCACCGGGCGACCATCCGCAGGTCCCACGAACAATGTAGCCTAGCTCCAACG
GCGGCGGAGGTCGATCTGACTTTGTAGCAAGCTAGCGGCGCACGCAGCAAGGCTCGGTGG
TAACTCCGAGCATGCATGCATGGCTGCGGCAAAACGAAGCTGTAAAACTCCTTGTGAAAC
TGTAAAATGGCTCATGGACTGCTCCGGCATCTTCCCTGTGTCAGAGGATAGGACGGGGTA
CAGTGTCTGCTGGAGAGGATCAATGGATCAGGATCGCTTCTGCTTCCCGCTGCAGTACTC
AATCCTGACATGGCCTACCCTTTTTAAAGCTTCTGCACCGCCGGTCATGATGCTCATGAT
GCCGCGGACGGACATGAGTCAATCTGATTCTGAAGGATAGCTAGCACTGTTCGTGCACAT
GCGTCATGGCGCTGGTGGCAGCTTGAGCTGGCACGAGCTCCGGCAGTCCATGCCTTATCA
TCAGCTGCTTGTGGCCAAGATGCTTCGATCGCATCGCCCGCCCGCGACGGTGCTGCCGAA
CCGGGGAGCACGGCAAGCGCGCGAAGGGTTTTTGCTCCATTGGCGCTGCTTCTATCGGCG
TAGCGTACGCGAAGCCTCTAGAAGTTCCAAAGGGCACGTAGGTCGGCGCCGTGATCTGGA
AACTCGTGACTCGTTAGGGCATGAACACTGGTGGCGAAAAAAGACAGGTGCCCCATCAAA
CTTGGAAGGATTGAGGTTATTGTTCAGTCCAATGGTGGCTATGATGGTGCTGCCTCACAG
CCGTCATTCACTGTCCTCATATGTTCATCTTTTTCATTCTTTCTCCCTTTCTTTTTCTCT
CCTTCCTTACTTTTTCTTATTTTTTTATTGAAAAACCAGCCTCTCTACAAGCTTCACCTG
GCGCATGCAAGCAGCGGTCCTCCTGCCAGAGTGGCATCCGAGCCTAGTTGGCCTATGAAG
CATCACCTTTGGGGCTACCCATTGGGCATGCTCTTAGGTGGAATGGAAATCAAAAACTCT
CTCAATAGCCCCGTTTGGATACTCTAACTCGGTTAGAGGTTAGAGTTAGATTTTAAGAGG
GTGTTTGGATACTCTTTAGTCATGTGACTAGTAGTAGTCAGACTAGAAGTTTGTAGT