Map Locations of contig_54984 (10912 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54984

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68578 5 2520 bp MLOC_68578.1 Available Available LOC_Os12g37630.1, FRAME:-3, EVALUE:0.0, 13112.m03872 protein domain of unknown function family protein, expressed
MLOC_68579 1 384 bp MLOC_68579.1 Available Available None
MLOC_68577 1 1677 bp MLOC_68577.1 Available Available LOC_Os12g37610.1, FRAME:+1, EVALUE:1e-111, 13112.m03870 protein ribosomal protein S6, putative, expressed





CDS Structure of MLOC_68578






CDS Structure of MLOC_68579






CDS Structure of MLOC_68577






Contig Sequence (10912 bp)

>contig_54984 10912 assembly3_WGSMorex_rbca.fasta
CGTGGGATGGATCGTGATTGGATCGGCAAGACATTCGACTACATCAGCCGCGTTTCTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGATCCGATCTCCCATCTCGTAGATGAT
CATCACCATGATAGGTCTTTCGTGCGCGTAGGAAATTTTGTGTTTCCCATGCAATGTTCC
CCAGCACAGGGGCGTTGTGAATTGTGTGGCTGAATCATGCTGGTTGCGGTAGCTTCTACA
TGAACTCAAGCATCCACCTACCCGAGCCACTATTGTATACTGTGACAACACAAGTGCTTC
CTATCTTGCGAGCAACCCAGTGCAACATCATGGTATCAAATACATTGAAATCGACTTGCA
CTTTGTTTGCGACCGGGTCGCTCTAGGTGAAGCTTGTGTCCTTCATGTCCCCTTGAGCTC
TCAGTTTGCGGACATTTTCACCAAGGATTGCCATCAAAAGTGACCATTGATTTTTGGTCC
AACCTGAACATCCTTTCGAACGGAATTCCAGCTAAGGGCGAGGGGGGCTGTTAGATCATG
TACAATGTACTCTATGTTGTAACTCACCGGGATCGTAGGATCTTAACCATGCCAAGGCAT
GCGTGCCTAAATTGTAGGGCGCCCGATACTCCTCTCTCCCTGGCTATATTTTGCACTATG
TAACAGTTTGAGTCGATCAAGGAAATAATTTTTCCAACTTATACACCCGAGAGACAAAGG
TGATTGTCCATGGGCAAACACTTTTTTCTCTATGCGCGACGACTGGGAGTTTGGTGAAGC
TTCGAGTGCCAATCACATTGCTATTGGAGACAACAGTGGAGCTGAGGGAGATCACACCGC
ATAGTGGTTAGGGTCGCTAGGACTAGGAGGAGCTCAATAGTGGCAACAACATTTGTGGGA
GGGATGGATTCAGAGATATTAGGTCCGGGGAGCTCCGAATTACATGTTAAAATTTAGAGA
AGAATTGAAGAACATGGAGGGCGTCGACGTGGGAGAAGAATCACCACCTCTTTGCACCTA
AAAGGATGGCAAGGGGATGGAGGTTCATCCAGTGGTGATGGCAAAAAGAATGACAACATA
GGGGCAAGGTCATGACCTTTGTCTCATCCTTGCAAAGAAATGGCTTACGGGGACTCAAGC
CGTCAAAAGAGTTTCGGAACCTTCGCCCACACGAGCCCTCATGAAAAATATAGGAAGTTA
CTGCTTTCTACAGTAGATTTTTGTCGCTGAAACCACTCTCAAAAGAAGAGAAAGAAGACA
CGAAATCCAAAATTGGATCATTAGACGTAGTTTACTTATCTGGTTGGACCGCAACATATA
TGGAATTTATTTTCAGAAAATGAGATGAGAAATGGGAATATAGTATGTGCTTGTGTAGAC
TACGAGATGAAACTAGAAAACCTTGGATCAAATTGTATGTGCACAGGTGTTATCTTATTT
GTTCAGCCAATGAGATGGTGATGGAGAAAGAGCATTCTGAACTATCAATCTTGCCGGCCA
CTAATCACCTAAAAAAAATTCCCGGCCACTAAGACAATATTTGATCGATTTCACACTGTA
ACTCATGTGATACAATATCATGATCACGAGCTAATACTTTTGAATACAGATTTAATAAGT
ACCAATTTTATACTGTACCATGTAAGATACATATATTAGCAGAGAAATTATTGGTCAAAG
TTTGTCCTAGACCCAAATACATGTCACATTTTGTTCAAAGTCTCCGTGTCGTTTTTTCCT
GAAGGTCAAACAAAATTTTAGCTTAAACAATCTATTTCTTTCACAAGAATAGGTACTATA
TCAAGAAATTGCACAAAGATTAAAGCACATTAATGGACAAATACTAAGACATAGTTTTAC
AGTGTTGTACGCAGGACAATAACTATTTTGCCCCATCCGAAGAGCATCTCGTACACAAAA
AGAAAAAAGTACAACAAAGCAGGTCCAGAGTTACAACAAAGCAGGTCGCCTATTTTCCAA
AATTGTCATATGAAATTGCATAGAAATTCTTTCATTTGATCGATGTAAGGTGGCCGTGTA
GGAATGATATGCCCCATGTCATGCTCAACGATGGTGCACCGGCCTTCCTCAAACATACCA
GCAAGTTCAGTGCTTGCCCTGCTTGCGATCTGCCTGTCATGACCTTCACCACCACCGAAG
CAATGAAGCGAGGGAAGCCTGATTGGCTCGCTGTCGAAATCACCAACAGGTGCTGGATAT
CCAGAACAGAATATCCCAAACCTGAACTTTGGAGAGCCGCAGGTCTTTTGCTGCTGCCTG
CACAGTAAGGCAGCCATTGCCGCACCCTGGGAGAAACCGAGAACGCCATCAAAGTTGCCG
TCCTGAGCAATTATACTATCAAGGTATGCATATGATTCCTTGAACCCGTCTGTTTGTTCC
TGATACTGAAGGGGGTCAAACGGTGCATCTGCAACCTTCCAATCTTGCATGCTGTGGCAG
CTCATTTTCGGAGAAACTAGCCATGCAAATTTTGTTTTCGCTGTGGCAGATGGAGGTGAG
GGTTTGTCGGAGTAGACATCTGGATGTGGTTGGTATACAAATGAAAGCTCATGAGGAGCG
TCTATAAAGACAAGCTCCGCGATGTGCTTCAGCTTCTTCGCAAGTGATGATGTTCTTCCC
TTAAAGTTTGAAGAGTTCTGACGGAAACCGTGTAAGCAGAGAATCCTCAATTTCTTCAGC
TGCTCACTACCTGGTACATCATTTCCACATTGTAATACTAACTCAGACAAAAATACTAAC
TCAGAAGTAATACACAGGCACCAACAGAAGGTGATACTATAAAGGACAGACCCGGTGCAT
AGAAGCTCACACACAAGGTGGGGGTCTGGGGAGGGATTATAGGAACCTAGTTACCCCTGC
GAAGTGCAATGCAGAGAGGCTGGTTCGAACTCAGGACCTCTTGGCACAAGTGAGGAGGAC
TTCACCACTGCGCCAGGCCTGTCCTCTAACAAAAGGTAATACTATCTCAGACAAAAATGT
ATTGAAGACCACAAACGAGTTGGTTGAAAAAGAAATAGGTTCTTCAAACTACAAGTGGAA
GTTTGTGAGGAGAAAACAGGAGAAAACGTCAACATTTGTTGCAACACTGTCAAAAGCTGC
ATGTGTGCCGTGCTTGATGCGTGCGCCAGACAGACCTGCCATTTGACCAATGCTTTTATC
TCTTTGCTCCGGAGCAATACACGGGTAACAACTAGTTAAGTTAGTACAGGAGCTTGCTAC
CATATGGAGTTCATTTTGACCCCGTAGGTTTCAAATACTCCCTACAAAATTAGCGAATCT
ACTGTTTGTTACTCTTTCTTGCTGAGCACCACTTCTTTAGTTCTGCCTACATAGATACTC
TCTACAAAATTAGTGAATCTACTGTTTCCTGGTGAGCAACACTTCTTTAGTTCTGCCTAC
ATAGCATATGGACTTCTAGGCTCGGCATACTTGATAATTCTTAAATAGCCAAACATCACG
ATGATACAAATCTAAATTGATACAGACCTTACCATTACTTCCGGGAGCTTTGAAGGATGA
AATTTTATTGCTTATGGATAGCTTTCCAATGTCAGAAGGTTCAGATAGCTCTGACTTTGT
TTGGCAGTCTTGCTTTACAGATATTTCACAGCACTGTTTTCCATTCTTTAAACATAGTTC
ACATACATACTCCTTAGTAGAATCCTGGAGAAGAAAATGTTTACAAGATTTAGCAGACAC
ATTCTGGCATGGCGTCATCAAGAATGAAATTAAGGTACTTCCTCTGTAAAGAAATGTAAG
ACGTTTTAGTTCACTATTTTAGCGATCTAAAACATCTTATATTTGTTTACAGAGGGAGTA
ATTAGCAACAATTTAGAGAACAATATAAAGCATGGCATCTTAGGCACCTGACATGTGGAG
CACACTAAGACCAACATTCTGCAATGGCTGCAACGACACCGAGAGGAATAGTCATCATAG
GTAGATCCGCATATCAAACAAGTTCCAAGTATGTTATCTTTAATTCTTCCCACAGAGATT
CTGTTAAACCATATTGAAACAAGTTAAGTAACTGAGTTACTATGAAATAGTTCGAGGGTT
CGAGCACAAAGTTCAGCACTAACCTATGGTCAAATACAAAATTCTTTCCATCAAAATAGC
CACCATCTGGATATTGCTCCAAATATCTCTGAATGCCACCGTATAACTAACGCAAGCACA
ATAATAAATGACCATAAATAATGCAAAAGTACGATATCATGGTGAATATGTACGGATGTC
TGAAATCTCAAAATTAGCAACTGAAAGGTGCAGCTTACCTGAAAAACATTCTCGAAGCCT
TCACCTTTGGAGCGGATATAAGCTGAGGCCATCTCACAGCGTATACCTCCTGTGCAGTAC
CTGAAAATACCAATAAGGTAGTTACTTAATTTGCTTGCTAAATGTGTTGCCTAAAATCTA
AAGCAATGTATAATTCAAAGATCTGGCCATACATACATCATAATTGATTTACCACGTAGC
TTCTCAGTATGCTCATCTATCCACAATGGCAAGTCACTGTATTGTCTGATTTCAGGATGC
AGCGTCTCCACATTTGGTACATGAAACTTGCCGATCCGGGTCTCATACAGATTCCTTGCA
TCCAAAACAACCACATCATTCTGCCCCGCAGGCGCCTCAGTATCCAAACAGGTTCCTGCT
AAAAGAACAACCCAACTTAGATCAAGCTCTTGTTTAAACATCTGTTCTTTCACGGCAAGG
GAATGATCTCGCTACTAAGCAGAGAGTAGGTCACATTGAGAGCCAGATGTATGCAAGCTT
CAGTTTGAGAATCAACCCACCCACACTCTGAAGCACCGAGTGGAACTCAGCCGCTGACAA
ATGCCTCCCCGCGAATTTGATATCGGGGGTTGTCAATGACGGGTTGGAACAAAGCGTGAC
CAGCTCCTGCCAATTCCAAGAACAGCATTATACACAATGCAATCGACGAGACTTTCACGG
AGCTACACGAGCTCATAAATGATGAAAACATTTGCCTTGTTAGGGAGATGAGAACCTTGA
CGAGCCGAACGGAGAGCGACGTGAAGCCGCACTCCCTGGCGACCCTGTCGTCCACAGGGT
CCTCGCAGGAGGCCAGCTTGAAGTCGGCCCCGTCGAACAGGCTGTTCGAGCTCATTTCCT
TGATGTGCTTTTCCAGCGCCGCCATTCTTCCCCCGAGCTACCAGCACAAAACGTGGCCAC
GAATTCAAGTACTCACCACGAGACATAAGAGGGAACCAGAAAGAGGCGGATGCTCACCGT
CGCATTGACGCCGTCGGGGCCGACGCGGACGCGGCCGACGAGCGCGAGAGCGCGGCAGCG
GGACTCGTAGAAGGCCGCGAGCGCGGGGGCGTCGGGGACCTCGGCGTACTTGTAGTACAG
GAGCACGCCGTAGCTTCCGTCTCCACCGCCTCCTTCCTCCTGCTTCGGCTGCTCCTGTGT
CGATGTCGCCGTCGCGTCCATGGCTACGAGTACGACCACGAGCCGCAAAACCCTAGGCGA
CTGCGGCCGGAGGAGGAAGAAGGCGGACAGGCCGGCTTTCCCAGAACCTGGCCCATGATG
ATTGAGAGCGCGGCCTCTTTTACAGGAAACAAAAAAAATAAGGTCCACCGGAGAGCCCGG
CCCATTAACTACCTTATCTGCCCATGTTTCATTTCGCTTCGCGTCCCCAAACCAAAACCC
CCGCGAGAACCTTCCTCCTCTCCTCTCCGGCTGTCCTTCTCACCCGCGACCGGCGCTCAT
GGAGGCCACAGCCGCGTCGACGCGGCCTCTCTTCCTCCTGGCGCCCTCCCCGCCGCTGGT
AAGCACGGTGCGCCTCTCCCTTCGCGTGGGGAGGCGCCGGCTCGTAGCCGCGGGGGCCAG
GAAGAAGAGGGGGCGGCAGGACGGGGATGCGGGGGAGGAGAGGGTGGACGCGCACAGCTT
CAACCCCAAGGACGGCGAGGTCACCGGGCCATTCCCCGAGGCCGTGCTTCTGAGAAAGGT
GCGTGTGCTCTTAGTCGTGCTTTGAATGCCTAGAATTTTGATGTTAGATTATGGATAATG
ACCCCCCTGAGCTTTGACGAATACTTCGTATCACATATGGCATGGTTGCTAGTTTAGTGA
AGTAGGCAGATTATTCGATAGAACTTGGAACAAAAAGGTAGGCAGATTATTGGAGGCAAT
AGATGGTATTTGTTGCAGCTTTCCCAATCTGAATTCTGAATATGGTATCATTCATTCTGC
GCTCATAGTTTTCAGATTGCAGTATTATTTTTGTCGAATTAATAGTGAGCATGGGTAGAT
CCACAATTGTAGTTTCATGATGATGTTCGGTAGGCTGGATGGGATTCACTAATAATGAAC
GAAATCTACTGATACAATCTGCAGTGTTTCTATTTTGCTAAAAACCTGGTAACTGTCCCT
TATGCTTGGCATTTGGCCCATCATCTTTCGTTGGAAGAAAGACCACATAGTAGCCCGGAT
TTGTATGAAAGCGGTGAAACTAGTATTTCTGCTGGCATACCAGCTTACAAGTAGGGCCCA
TGAAAAGAATGGGCTGGAAACCCTGAATTGACCAAGTAGGAAACCAGGATGCAACAACAA
CCGACATTCAGCCTGCAGCAAACAGACCGACAAGTAACAGGAATAGGCTGGAAGTCATTA
GACAGGAACCACACAGCAGACCCATAAACAACTGTTGCTACTCAACGCCGTGTCTAGCGT
GCGCCTCCCCTCCAACAGCAATTAAAACTTCTCCTTGGCTCCTTCGGTTGCTTGCGATTA
TGTTGCAGGTTGTAGCAAATTCCATTGATGCATGGGAGAAGTACAATATCAATCTCTGAA
CACCATAATCTGTCGCCATTAGCCAATGGACCAAACTATCACTGCTAAGACTCAAATGAC
AGACAAATTGTAATAGTTAAAATCAGTTTCATGTTTGTTTCCTTAGATTAGGTAGTTTTC
AATGTTTATTTTGCTCCTTGAGAAGAAAGCATAAATGTGACTTGTAGTTGATTATACTTT
TTATGCTGATTGGTTTGCAGAAAAAGGTGAAAGAGGACGGTGAAGCTTTGCCAGAATTCG
CGGACGCCGAAGAAGGTGATGGTCATTTTGCACTCAATTGGTTCTTTTTGTGGTTGATGT
AAATACGCAATCCGTCTAACCCAACTACATTTACAGAAAAGCTATACGAGCTTCTTAACA
TTCAGCTAGAGAGTGGTTTAAATTTGCAAAGAAGTAAGACCCCTTTCTTTTCCTCCTTTA
TCAAATTAGTTTAATTGGTTATATAAGGCGGCATCATTTGCACGCTTGTTTAGATGTCGT
GATCTGGGATCAAGATAATGAACTTTCTCCATCATTATGTAGTGCGGCACTATGAAGTTG
TTTACCTCATTCACGAGGACCGTGTGGAAGAAGTTGAAGACGTTGTATCCAAAGTACAAG
GTGCATTTCTCAATACTCGCGCATCGCTTACTCAGTTGTACAAAGATATGAATTTGTCCA
CATGTTGTTTGTATGTACTTAAATCCTCAATGAGTTAATCTCAGGCATGATGAGTAGACA
AAATTCCGTATTATGGCGGCAAGGGTTTGACACTCCCCTGGAGCTATGGCCTGCTAAACA
ATACTCCTGTCTGGCTGATTTGCTAACTCTAATCCCCTAAAACGTACTACTTGGGGTATT
TCAGTTCTATTGAGCATTGAGCTTCTGCAAGGTATGCTATAAACTATGTTCTTCATTCTA
TTGCAGACTTTATCAGAGAGAAGAAAGGAAGGATTTGGAGGGTTAACAACTGGGGACTGC
GTAGACTTGCTTACAAGATAAAGAAAGCAACGCATGCCAACTACATCCTAATGAACTTTG
AGATACAGGCACAATCCATAAATGATTTCAAGACTCTGCTAGATAAGGATGAAAGAATCA
TTAGACACCTTGTGATGAAACGAGATGAGGCGATTACTGAAGACTGCCCTCCTCCACCAG
AGTTCCACGCAATGCGATCTCAACAGTTGGATGATGAATATATTGATGAGGAATATGGGA
AGGCGGACGATGCGGATGATGAGGCTGAACTAGAGTCTTTTGGCAATGTTGACGATGATG
TTGAAGATGGCGATGAACCTGAAATCATTCTTGTTGATGAAGTTGACGATGACAATGCTG
AAGACCTCAGAAGAAGAAATAGGAAGGTGAAACTGGAGAAGTATACGTTGGAGAAGGTCT
TGAGGTAGCATGTGTATCTACTTTATGGTTTAGTTCTTATACAAAGGAACACTTGTATGT
TGAAGAAGTAATTATATTAGGTGTTTTCCCTGTACCAATGACCACTATTACGATGGTAGT
AATTAGTGAGATAAGCTCATCAGGTCATCTCCCTAAATCTGGAGCTGCTGTTGTTTTTCC
AGATTGTGTAGTATGCGATCATTCCCTTGTAGATGCATTCTTTAGTACACCTTTGGTTTT
TTGAAAAACATCAAAAGCCAAATTACCGTAGTGTGGGTTAAAAAGACAAATTTAAGTAAT
TAGCACAACTCTTTATTGTAAAACTCATGCATCCTTTTATTGACTTAATTTTTAAAACTA
ATTGCCAAAGTTTTTACAAATCCATATGCTTGGTAGTTGGAATAGATGCTTTCATTTTAG
CAGTACATAAGAAGAGCTGGTCTATAATTTGATCAAGATGTGCTTCTGTTACTTCTGATG
TTCTCCTTGAAAAACTGCAATCCCTACTGCGTAATAGTGCACCTACACGTTTGAGCAGAC
TAAGTTTTTTCGTCATATTCAGTTTGCTGTTGATCTGTGTGTGACAAAATGCTTAGTGAC
TGATGAATTCCTTCAATACTTGATATTCTGCATGATAGTTGCTGAATTCCTCTGCAGGTC
CTCGTGTTTGCTGGACTGTATCAGTTAATTAAACCTTGGTAGCCTATATATGCACTGTTT
GGTTCATGTTGTTACTCTAAAAATTCAGCATATCTTCATCATTTATCCAGACACTCTTAG
AATCTTTTTGCCTTTGTCTGTACAAGGTACTCACATTTCCAACTGCATTTAACTGAGTAC
AATGCTGGGTATTGACTTGTTAAGCTCATGACATGATCTAACCAATATGGTGGCAATCTA
GCAATCTGGAAGATGATGGGCTTGGTATGCAAACTTCACTAATGATTATACCTTAATACT
GTTCAACAGTTGTTGGTAGGTGTCTTCCATGCTCAATAAAGGCTGAGATGATTGAATGAA
TTCGCCAATCAATAACTAGCATCAACTTAGGTCGTAGAGAATTCTTGTTCATGCCCCAAC
TTGTTTGTGGCTGGTCTCCTGCAAGTTTTTCCATCAAATAGAGACTATTAAAATTTGCAG
TTTATCACGAGTGAACTTATCTGTGCATGATTCTGACCATCTTTCTTCGAACGTATGTAG
TTATAATGCATCTCTCAGAATTTGGCATATCATTTTTTTTAAACCCATTTGGCATATCAT
TTTGTTCTGTCATTACTTGCTTTATGTTGCATTTAGGACCTTTGGCTTACGATCAAGACT
TGGAACTGGTTTGTTATTGATTGCTGGGACCTTGTTAGTTCACCAGCTTATTTCGCCGTA
ATTTTCTCCATGCCGCAATGCCAAACTGCTGGTTCCAGATTTTCTGCTGACAGGAGAATT
CTCAATTGGGAATAATTGCTTAGATATTTAGTGAGTTTCTTCACTTATTCGCTATTTGCC
GTATGGCGCATTGATGAGCCGAAATCGGTGTACGACTGGCCTTATATTGTACTGTTGCCG
CGCATGATCCCGTACTTTGCTTTGAACAGTGTATCTATGATCTGGACACTTTGATCGCCT
CTGGTGGTCCCCTTTGTCCATCTGATCATGGTCTGGAAACCTTCAATACCTGCTAGTGAC
CAATGTCATCTTGACATCTCGGTGATATGTTGGCCTGTTTTGGTCATAATCTGAAGAACC
TTCAGACAAATTCCGACTTGGGACGTAACGTGTTTGGCATGTACCAACTAATTACGTCCA
CCAACTTTGCACAGATGTCTTATTGGATTTCTTTTTCCTAGTTCGTTATAAGGTGTTGCA
ATGAGCACAGATTCCCTTTTAACATTATGGCCATAATGTGGAAAGCCCCATGACTTTCTG
TCCAATCTCCAATTTCTGCTCTTGTTAGGGACTAATTATCGTCGCCGGCTGTCACTACCT
AACTACTTTCTCATGTTCATTCAAGGCAACACTTTAGCACGATCTTTTCTTTATCAGAAG
AAACCATCCAGGTTACATTCCAGCAAAATCTTTCGATGGCAGAAGAACCTTTTCTGTATC
AGAAGAAACTATCCAGAGTACATTCCAGCAAAATCTTTCGATGGCAGAAGAAGTATCTAG
GCTGTCGGTTGAGTGATGAATGGAGTCAATTTGAATTGTTGATGTTCTGGAACACTGCTT
CTGTAGATGATGCTGGAATTTCGGTAGAAACTGGCTGTTGATAGCTGAACAACTGACTAA
CCAGGTCAGATTCGAGCAATGCAGAACTATCCAGGCCATCTGTGGAGTGGTTTGTTCCAC
TGTTTAGGGCCCCCAAAAGAGGGTGGTCACTGATAACTCGTGGTACAAAGTGGCTGTAGT
GTGAAGTAATGGCTTCTCGGGCCTGCTTGTGCAGGTGACGGTGTCATTTTGTCTCTCATT
TCTTGTACGTCCCAACAGTAGCGCGTGATGACGGATTCCTATTCTGCTGGTATAGGGAAG
TAAACTATTGTTGACATCAAAGCGTCTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAG
CAATAGACCCGGGTTCGACTCCCGGCAGACGCACTTTTTCTTTTCCTCCTACATTTGTTT
CACTGTTTCTGGAACTCGTTTTGGTTACTTAACCTTGTCTTGTAGCGAAAAT