Map Locations of contig_54979 (5740 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_54979

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68571 5 3879 bp AK376605 Available Available None





CDS Structure of MLOC_68571






Contig Sequence (5740 bp)

>contig_54979 5740 assembly3_WGSMorex_rbca.fasta
TCTAGGGCATAATTCCAACAGTGGTGCCAGGGGCAGATGACGAATGTTGGTGTCAAGCTC
AGCGGTGTTTTGCCATCCTTTTAGTTTTGTCATGGTGGTTTTTACATGACTTGTAATTTA
ATCTTTATCATATAAATGAGACACAGATTACCATGCAAAAAATTACACTTTTGGTATACA
TCTAAAGCATTTTTTCTCTAGGTTTAACATCTTTCATAAGCATGATTAACTATTTATCAT
ATATATGTTTTGATGTCTACTTTTAAAGTACACATTATATATTCTCGGTATACATCAAAG
AAAAAGATTATACATGTTGTAACATTTTTTCAAATACATTATTAACAAAAAAATAAAATA
TATGTTTTGGTGTGTATTGTTTCAATACAAATTTAACATTTTGTTTTCAAATATATGTTT
GAAGTGTATTGTTTCAATACACATTGTACATTTTTTCTATACTTACTAAAAACATTTTCA
ATACACGTTTAACAATTCTCATATACATGATTAACATTCTTTCCAAATATATGTTATGAT
GTCTACTTTTTTTCATACGCATCTACATTTTTCTTATACACCTGAAACATTTTTTTCATA
GTCGTCTAACATTTTTTTTAAAATTACACGCACAGTTTTGTACATGGTATGACATTTTAA
AAAAGCATGCTTGCTTACAAAATTGTAAATATTCAAATATTTGAACATTCTTTAAATGTA
ACAGACATTTCTTTGAAGGTTGTCGACATATTTCAATTCAACAAAAAAATATACTGTATT
AACATTTATAAAATTTTCGAATTGTTTTATTTTAAAAATATAATAAAGTTATAAATAAAA
AAAATGAAAGATGAATGATTGAACTTAGCGAAGCAACGAATGCAGTGAAGAACTAAATGG
GTGATTCCACTTCTAGCTCTCTTTAGGCGATCGCGGCCTATTGCTCGCTTATAGCAAATT
ACAAGCGTGCCCATCCTTTCGTTCTTCCTTTGGAAGAGTTTCGGTCCTGTTCACCTCGGT
TTCTCGGTTTGCACAATGACTAGTGGCTAAATTTCGTGTGATTAACTCTTCTCTCACTAG
GTTATTGCATTCTGTTTTTTTGTTTCGCTTTTATCTATGTTAGTTTGGGTTTTAATTACC
AGACAGCAAGCGATAAGCTATCTAATAAAAACCTTGGGTTTTAATCATATTACAACGATG
CCTTTCTCATTTGTACATCGTGTTGGATTTGTGTTGAAGATTGTATTTATTTTAAGAGGA
TAGTGGAGTTGATTGGTGTGTGGTTGTGCTATCATTATACATTTCGGCTTCGGTGCCAGC
CGGTGCTGGATGCGGTAGCCCGCTCTTATTCCATGTTGAACAGTGAAATAAGTACTACTC
CCTTCGTTCTTAAATATAAGTCTTTTAATCAATTTCACTAGAAGTCTATATACGGAGTAA
AATTAGTGAATCTATACTCTAAAGTATGTATATATACATCCGTATATAGTCTACTAGTAA
AATCTCTAAAAAGATTTAGGCAGTGTTTCTTTTCAAGGGACTAGACTTTTTTTTTAGTCC
CAGGGACTAAAGAAAAAAGTCCCTCCAAGAGAGTCTTCTTCGAGTCCCTTAAGGAAAAGT
CACTCTTGTTTCTTTACCTAGGGACTAAAAGGGACTTTTTAGTCTAGTCCCTGGGTAAAG
AAACACCACCTTATATTTAAGAACGGAGGGAGTATTTATTAAGCTCGCAAGCTACAAGCT
TTTAGTCCAGTCCAAATTTTTTTTTTTAAAAAAATCTGGCAGCACTCGCTCCATGACATT
TCATAAAAAATGTTTTTCCATAATTACATCACCAAGAAAATGAAAACAAAAGCTATTAAT
TAATAAATGAATAAAAGCCAGTTGATGTTCCCGTCGCTAGCCTCTGTTTGTCACGTGGCA
GAACTCTCTGATCTCGCCCTCGCCGGTGCCGGTGAGCTCGCTCATCTTCCTCATGGCGGC
AGCGAACTTTGCCGCCCACTCCCGCTGGTCCCCCGCGCTGTCCTCCACCATCCGCCTCGT
CTCGCCGTCGTCGAGCAGCGCCCGGTCCGAGTTGAAGGGCACCCTCCCGGCGAGCACGTT
CCCGAAGTAGCGGCCGTCGAGGTCTCCCGGCGTCTCCTGGTCCTGCGCGACCCATTCCTC
CGCCCCGGCGTCCTCGGGGCACTGCGACTGCATGTCGGCGCCGTAGCTCGAGTCCATGGT
CTCGTGCACCGCGGGGTGGATCCGGTCCCTGAACGACGAGCAGTGCGCGCGCCCGATGGA
GTGCGCGCCGGAGAGCGCGACGAGCTCGTCCCTGCCGAAGCCTTTGGAGGCGAAGGCGCG
GACGAGGTCGTCGAGCTGCGCGAACGGCGGCGGCAGGCTCTGGATGGCGTCGGACGCGTC
AGAGGTGAGCCCGTCGCGGCGGCCCGAGGGGACGTCGTAGCTGACCGCCCCGGAGCTGAG
GACGAAGGCGGCGTCGCGGGCGGCGAAGGCGAGGATGTCGGCGCACGACACGGTGCCGGG
GCACGCGTCCTCCAGCTGCCTCTTGGCCTCCTCCACCACGTCGATCCCGCGGAGGCCGCC
GTTCGCCGGCGAGGCCTTCTCGGGGTTCGGGTTGACGGGGCTCGGATCAATGAGGACGGA
GCCATCACAGCCCTACAATGATGCATCAACAGAGCGCTGCTAGATCAGTTTCTACATACG
CAAAAGAAATAGAATATTCACCTACGTTACGTACGTACCTTGACAAAGCAATCATGGAAG
TGGAGGCGAATGAGCCCCGCGCCGGAGCCACCGTCGCCGGACCGGGAGACGTGTTGCTCG
ACGACAGCCCGCACGACGGCCTCGACGTCGACGGTGCAGTTGGTGCTGGCGCCGTAGAAC
CCGTCCTGCAGGGCGGCGTCGGCGGACGGTGGCAGCAGCCCATGCAGCGCCAACAAGAGC
AGCATTACCGAGTTGATGCGTCCTCCCGTCATCTTGCACACTCACGCTTCTTAACCAAGA
ATGTCAACTCCAAAACGAGAAGCTGCAACTGCAAGATCTATCTGGTGATGAAGAGGTGCT
ACTGATTTATATCGATCTGGACTTGTCTCGCATCCAGCGAGCTCGATCGAACATGGCGCG
AACTCGTGGAGCCTTTGACTCTGCTGACAATCTCGGCATGCAGGTTGCAAGGAATGATGG
ACATTGGACAGCGAGGATCCGCAGGTGGGAGAATATGAATATATTCTCGATATCAATCAG
CTAAAATCGATCTGAAACAGGGAAGGTACGCCTGCAGTTAATTAATTATTGGCGCCATGT
ACGGATGAGCGGAAGCAGCTAGTACCGAAATTTGTAGATCCAAGGTACGGAAGAATTAAT
TCGTAGATAGTATCATCTGCGGTTAATTAATGCACCTGAACCGTGGATGAACTGTTTAGT
GAGGTGATGTGAGACGAGGGAGTAGTGGTAGAAGAAATTCCAGAGTCCGTTTGGGCAGAG
CCGTGGCCTGTCCTTAGATGCCTGAACAAATTTCTCCGGGGTGAGCGTTCAACATTTGAT
CTCCTTCATGTCAGACCACTTACCCATCTTAGCGCAGCTTGCAAAGCTTAATCCTAGAAG
TCAGACACAAGGACAAAATCCATGGTACGACTACGAGGTGGTGCTGCCTGGATTTTCGAC
TGACAAAGCCAAGTATGTACATCATACAAGTATGAATTACTGAAGACAGCAATGAGCTCA
TTGAAGACGTGGAGTAAACAGAGGTTTCGGTCTATGCAAAAGGAACCTAAAAAGTTACAG
AGAAAAAAATGTAAAACCTCTGCATTACAGGGGAGGGTGATGGATGGAGCAGTAGCCTAG
CACTTCGTATTTCCAATTGTGAAGAACTAGTTGCCTCCACCTACCAATAGTGTTGTCACA
TTGGTCAGAAGATATGAACCAACGAACTGGAAGAACAAAACAGCGCTGAATATCACGAGA
CCCATCTTGAAATGAGATTCGTTCTTCTCACCTTTTACCCCAAGGAAATCACTCTACCTT
CTCCAGCAATGAGTGATTGACATGGAAACTATAACAGCCACATCAAGGTTAAAATGTGAT
CTCACCTGATGCTTGTGAACACGCAGAAAACAATGTAACCGGTAACAACGTCAGAAGCTT
GGTAGTCAAGTACCAGCAGTATACTGTCATGAATCAACTCCCGTGCAAACAAGGATAATT
CCAAACCAAATTAGATGTGACAATGATACATTTGATGTTACTATCAAAACAAAATTTCCA
AGACTTCAACCTACTAGACGACTACACGAGGCATAAGATAACCTATACAATCCTTATTTG
ATGACTTCCCGGATGATTCGGCTCTCTATCAGTTCAGATCGATCAACAGATCGTCTAAAC
TACCTGGAAGGCAATCTGGAGTCTTTATCTCGAGATCCCTTTAAGCACGAGTCATCAGAG
TGGTCGAAAATGATAGTGTAGTTCTTGCTGCTCACATCTCTAAAGTAGCATCCATGGGTA
CCCAGGTACTTATACACCTGGTGGTTCTCTCCGTAGCCAGAAGTCACCAGATTCCCCTTC
ACCCTCATACTACCGCGCGCAGACTGTGCATTCCGCAAAGAGCTGTAGGAGAAGCCTTGC
TCCCCACCGGAGACCCTCTTCTCATTGATGCCCAATTTGACAGCCGAAACAAGTGAGTAC
TCATCACCCACCTCGTCTGAGGTCCCAGAGAAAAGATAGAGTGGGAAGACCTGGTGAACT
ACTTCTTCCGAGTGCAGCACGGCGCCGTTAGTGGTGAAAACGCCTGACTTTACGTCGATA
GTTTGGTTCACCACTTGCTCGCTGCCGTTCTTGCTATACACATTGCTGTTTTTGTAGCTG
AATCTCTGGTAGAAAGTTGTCATGACCTTTCCGTGTGACGATTCCACCCAGCCGGTGGCG
GAGACATGCCGGCTTGCGCTTGACATGAACCGCCCATCCAGCCCGCTGAACTCCGAGTCC
ACATTTGCCGATGTGGACGTATCATAGCTGACAATGCCCCCAGTTGTCTTTCCACTCTTG
TGATCTAACCATAGGTGCAAATTGGCATCAATGAACCATACATCCAACGCATTTGTCACA
CCAAACCCGAACTCATGCTCCTTGCCATCCAGGAGCTTCCCCAAGAATGGCGTGATGTCA
ATGTCATATGTTGGGAGATTGAATGAGCCAATGCCAGTGATAGGCCGCCAGAAAAGCGGG
TTGACACCGCCGGTGTAGATGACAGTGAACGGCCAAACAGCACCGACGATGTCTTCATTG
ACCTTAACAATGACCTCCCGGAAGGCGCCATTGCCAATGTTGCTAGACAACTTGTTGGCC
TCAATGTACTCGTTGGGAGGGTGGGTGAACCAGTCCTCATCGTTGGAGTGGAACGAAACA
AACACCTCAAGGACCGCCCTGTAGGTGTTCGACGGAATGGCAAGCTTCTTTGACTGCGCA
TCGGTGGAATTCTGGATGGCGAACCACTGCCCGTCATTCAGAGGTAGGCTTCTCGAGATG
GGCAGGACCAAATCGGAGTGCGGCGGCGGCGGCGGTGACGGCGTTGTGGGGTGGAAGTAA
AGATGGAGCGTGAGATTGGCGTGGTAGACACCGGTGTATGTGCTATCGACGATGTTGCCA
AGGTACACCGCGACCTCGCCAGGCTCGGAGAGAAGCGCCGCGTACCTCGTGACGTCGCGG
GAGACCGACCAGTGGATGCCGTTGGGGCGCGGCTCGGCGG