morexGenes - Barley RNA-seq Database

Contig contig_54959

Source Contig contig_54959

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_54959 (5086 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_54959

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68565	1	2284 bp	MLOC_68565.1	Available	Available	LOC_Os09g25050.1, FRAME:-3, EVALUE:0.0, 13109.m02390 protein PPR repeat domain containing protein, putative, expressed
MLOC_68564	1	1487 bp	AK358982	Available	Available	None

CDS Structure of MLOC_68565

CDS Structure of MLOC_68564

Contig Sequence (5086 bp)

>contig_54959 5086 assembly3_WGSMorex_rbca.fasta
CTGATCTGGTAAGATCTTTGAACTCAGAACATGCCTACATGGTCTGATGTTGCTTATCCA
TGGTCTGATGTTGCTTATCCATAAGGTTCCAAGTCAATTCTCATTTTGTCAATGGGCATC
CTAGTGATTTTGGTGATTAAGTTGTCATGCTACCTGTTGGAATATCTTTTGTTAGAGATT
GCTTGCCTATGTTTTTTCCCCTCAACACATTCAGTTGTAATCATTTTGCTACTTTGCCAA
ATCAGATAAATCACAATGGTGATATTACCTCAAAAGAATCGTGTTGGGAGATCAAAGGAA
AGGGATTTTTAGGTAGGGATACTGTGTTCTCTTTGCGGACGCCAGTGGATGTTAAATCTG
GAGAACAAGTATGCATGAACTTTTATTACCTTCGTTATGTAATGTAATATTTGCCACAAG
ATTCCATAACCAGCAGTTCTGATGATATACTTTGACAGATATATGTTCAGTATGACCTGG
ACAAGAGTAATGCTGAATTGGCACTTGACTATGGGTTCACCGAATCAAACTCGTCAAGGG
ACTCATATACTCTGACGCTGGAGATCTCTGAATCTGATCCATTCTATGAAGACAAACTCG
ACATTGCAGAGCTAAATGGAATGGGGGAGACCGCATACTTCGATGTCGTCCTCGGTGAAT
CACTTCCTCCTCAAATGATTACTTACCTGCGATTACTTTGCCTTGGGGGAACGGACGCAT
TTCTCTTGGAAGCCCTCTTTAGAAATAAAGTTTGGGAGCACCTTGAATTGCCTGTGAGTC
GTGATAACGAGGAATCAATATGCCAAGTCATCCAGAATGCCTGCAAATCTGCCCTTGCTG
CCTACCACACCACCATAGAAGAGGTGAGCCTACAGAAAAAAAGAATGCTATTCACTTTCA
TCTTATTTGTTGGTTACCTCCTGATTAGTCTGATAAAACATGCATAAAATATTCAGGATG
AAGAGCTACTGGAGAGAGAAGATCTGCAATCAAGACATCAAATCGCCGTTGAAGTGAGGG
TGGGTGAAAAGAAAGTACTAGAGCAAATCAATGATATTTTCAAGGAGAGGGAGCAAGAAT
TAGATGACCTTGAGTACTACCAGGAAAGGAGGCTCAAGGATCTCGGTTTTATTGGTGACA
ATGGTGACATCATCTTCTGGGAGTCCTAGGGACACATTGTAACATCCTATTTTTGCAATA
TCAGACTAATTTGAAAAAAAATAGGTTCACATAATTAACAAGAGCGATTGAAATTGGTTT
CTGTGCCATAATCAATAAAACAAAGTGGGAAAAAAATCAAATCACTGTCAACATTCAAAT
TTCAAACAAAGACAAGATTGCCAATGATAATTCTAGCAGGCACGACATAACTTCATTAAT
AATCTCATAAATACAAGAGACCATCTCAGCAAATTTGACTATCAGCAGCGAAGCTGTACA
ATTATCTATGACAATCAGCAGCAAATTTGAATATCGTCCAGTGTAGTCCTAGTGCAGCAT
GTGCTGGACACTTGCATCTTCGTCTCTACTCCAAGCTCGGCTAACTCAGAACACAAGCAA
ATAGTATATCAAACAACACAGAAGCGGTTTAGCGTGCTAGGTCGCATTACTGTCAATCTG
TCGTTTGCTACAGTTGGGCTTCAACTCTGAAGCTCTGTTCATTATAGCAATCTGTGTCTC
TTAGAGAAAACCTACAATCATCTTCTGCAGCTTCTATCAACCAGCATATCATCTACTCCC
TCCGTTCCTAAATATAAGTATTTTAAGATATTTCATTAGGAATCTACATACAGAGCAAAA
TAAGTGAANNNNNNNNNNNNNNNNNNNNTATATACATCCGTATGTAGTTCATCATGAAAC
CTCTTTAAAGACTTATATTTAGGAACGGAGGGAGTATAAGGTACGGGACCTCCCTTATTT
TCCATTTACAGAGCTGGTGGTCCACAATGATGCAAATTAATGTCAAGTTGGCTGGACCTT
CATTTGGCTTCAGAAGCAGGTTCATTTTCACCCCCAAAAAAAGCCTTCATTGAAATTCAT
ATGTGAAGGGCTATTGAGATGGCAAACCCTCAGTTCTGTCCCAGATGTAGCAGAATGGTT
CTTCATTGTGATGATTAACAAGTCACGGGGTTTGTGATCTGTGAACTGGGCTTCTGTGAA
ACTTCTCTTAAGACTTGATTCTAGTCAGATGAGCCAACACTTATGTTTCAACAGTTTTAA
GATCATTTGGTGCATCCCTTGACCAAATGTCAGGACAGACTGTTGTCATGGGTTTAACAC
CGACCTTTAACATATCAGCATAGAGCATCATGGCATTCAAGACATAGCCAAGCATGCACT
GTCCACGAATCAGTAGTGAGTAAGTGAAGCTATCAGGCACCATACCAGATTCTCTCATGC
AAGAGAAGAACTTACCAGCTTCATGGTATTGGCCATCTATATAAAGACCATATATCAAGG
TCATGTATGTCACACTGTTTGGGATTGAATGGTCTTCCTCAGTTGTGGAGTTCGATAAAC
AGGTATGAATGTCAGCAGGCTTCTTCTGCCCTGAGTGCTTCATGAAAATCATGACTGCAT
CTTGAATCCTATTCTCTCTGCAGAGACCATCAACAAGAACCGACACAGTGACTGAATTTG
GAGAAATGCCTTTCTCCGCCATCTCCTTCTGTAACCTAAAAGCAGCATTGATGTCACCAT
CCTTGGCATGGCCATGAATCAGAGCCGTGTATGTCAACACATTAGGTTCAACCCCTTTGG
CTATCATCTCCGTGTATATAGCCATTGCTATTTCCATCTTCCCTTTCTTTGAATGCCCAT
CTATCAAGGAGGAGTACGTCACCACATTGGCGTCAATTCCAATCTCACTCATTATTGTGC
ATGTTGCCAGGGCTTCAGCTAGATTTCCATTCTTGCAGTACTCATCAATTAGCGCGTTGA
ATGCAGCAGCATTAAGATTAATACCAGATTGCTGCATTGCTTCAAGAAACCTGGCCGCTA
CCTGCACTTGACCTCCCGAACAGAGGCCTCTTACAATTATGCTGCAGGTGAACTCATCTG
GGCACAAACCTAGGCGAGTCATGTCCTCATAAACTGTTAATGCTTCTTGTGAATCACTAG
ACCTGAAAGCTCCATCAATCAAGCTGTTGTACACGGGCACAGTGGGAGCGACTCCATACC
TGTGCATGTCAAGAAAAATATTTTTTGCATCACTTATTCTGTTCACCTGGAAGAAACCGT
CAATCAGCGTTGTAAAGATCACAGCATTGGGAACAAGACCACTCTTCAGCAATTCCTGGT
ACAATGTGAGTGCCCTCTTGATACCATCTCTTTTGCAGTGGCTGCTCATCAGTGCATTGT
ATGTGTAATGGTTGGGTTGCATCCCTGTTTCCTTCATGGTAAAGAACAACTGCTCCGCCT
CACCGATGCAGCCCTCGTCACAAAGTGCAGATATCATCGTCGAGTAAGTGACCACATTTG
GACCAATCCGTCTCGCCACCATCTGACCCCAGACCTCCCGAGCCTTCGCCACAGCTCCCT
CGTGCCGGCACGCGTTGATGAGCGTGTTGTACGTCACCACGGTCGGCACCATCCCCCGGC
TCAGCATTTCGTCGAACAGCTTCCAGACGCGGTCGAACCTGTGGGCTTTCACCAGCACGT
CGAGGATCGCGTTGCAAGCAGGCAGCGCCGGCAGCGTCCGCAGGCGGTGGAAGACGGACA
GCGCCTCGTCGTGGAGCGCCATCTGGGAGAGAGCGATGACGAGCACCCCGAGCGCGGGGC
CGGGGGAGGTGGAGGTGGAGGCGAGCGCGGCGAAAGCGGCGGCGCCGGGGCGCGCGCTGG
GGGAGGAGGCCTGGACGAGGGATTTCGTCAAACGGATGGCGTGCGGAAAGTCCTTGGCCG
CGGCCAAGCCGTGGACGGCGGCGGCGAGGTGGTCGGCGCGGTCCCTTGAGGTGGCCCGGG
CAGCGGCGGCTACGGCGGCGGCGGATAGGCAGCGGTGGTGCGTGGCGAGGGGCCGACGGC
GGGAGGAGAGGATGAGGCGGAGTGGTGGCGAGAGTGGCATGGGGTTGGCATTGGGGAGGC
GGCAAATCTGTACTGCTCTGCTCCTATTCGACTGGGGTTTGCCACCATAGAACGCCGCAA
GGGTTTTCTCGGTGAGCTTGTTGAATGTTGGTGCGGCTGGGCTAGGAGCATTCGGCAGAT
TCAGCTCGATGCAGCTTTTTTTTCATGCTTAAGGGCTCGATGCCATGGTTTAACTTACCA
CTGGCAAGCCACTTGGTTCTATTGTAACGACGCCGCTTGCCCAAATATATCGAGTGGACT
CCCATCCTTTACTTTAGAACGACCGAGTGTTCCGAGGACGTTGGTGTCGATGAAGGAGGA
GAAAGCTCAGGTGGAGCCCTTAGTCAAGGCACTGATTGGTCTGATCCACAACGGAGTGAC
ATGGATGGATTTGTTGAAGACCTTCCTTGGAAGACATATCCAGCCCCTCCAGGATCGGGA
CCACACTATGTGGCATTACACTGGCCCGGAGGACTCCGCTCGGTCTCATCCTGAAAAAGT
GGATGAAGACACGGTAGCGAAGTGGATCCGCAGGATAGCCGGCCCTTGCGACAATCCAAT
GGGGGCGAAGAGAGTCATGCCCTTATCTACTCAAAACCCACCGACAAATGAGGTTAGCTC
TGCTCTGTTGAATACCTTTGCATTACGGTCGAGTGTTTGCAATTTCCTTTTCGACTGAAC
TTGTGAGTTGTATCTTGCAGGCATGGACGAATTTGCACTCTCCGGTCCCGAACGGCAATG
CACTCGACATCGAGGAGGGGAGTATGGAGGGGAGCGCGGAAAGCGATGAATATGTCGAGG
GCAGTGAGGAGAATGAGGAGGAGGAGTCACAGGAGAGTGAAGAGGAAGACTCATCCCCTT
CTCGCCACGAGCCCCGGTCCAAACAGCGTCATGACCGTGCGGGCACTCCAAGCGAACCTC
TGGCGTCGAGTGGCAGGAGTTCCAAACGTGTCAGGGGATCGTCTGGCGAACCGGTGGAAC
AGCCTGCAAAGGTATCCAAGCCTAGCGGACCCAAACCTCGGAAGGC