morexGenes - Barley RNA-seq Database

Contig contig_54906
Source Contig contig_54906
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54906 (8933 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_54906

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68517	1	4513 bp	MLOC_68517.1	Available	Available	LOC_Os04g46960.2, FRAME:+1, EVALUE:3e-97, 13104.m04747 protein glutathione peroxidase domain containing protein, expressed
MLOC_68518	2	3395 bp	MLOC_68518.1	Available	Available	LOC_Os08g40150.2, FRAME:-2, EVALUE:2e-28, 13108.m04291 protein AT hook motif domain containing protein, expressed
CDS Structure of MLOC_68517

CDS Structure of MLOC_68518

Contig Sequence (8933 bp)

>contig_54906 8933 assembly3_WGSMorex_rbca.fasta
TTGTGTATTATACCTTCATTTATCTATGTTTTTTTTCAGAATTTTTTAAAACATTAAAAT
ACAAATTTTTACTGAATTTGAAGTTTGAATTTAAAGGCCTCCAGTGAGCTCGGGAGCCAA
AAGCAATATTCGTAAATAGTCTCTCTATATAGTAATATATGAACGTTTATATAACTATTT
TAATGATGTAAACACTCTTATATTTCTTTACGGAGGGAGTAATAGATATATCTATTAATT
TGAGTCTCGTGTTACGTTGCACTTCGTTTGCATTAGCATCATGTTAACATGGCTACGAGC
TTTGAACCAATTGACTTGAAGGCTTGATTTTTTGTGTGTGAATTCATTCAGTGCTCTTCC
TCTGTGTGTACACAAATACGGTTCAGTCAATATCCATCTAGGAAATACAGTTCAGTCAAT
ATCCATCTAGCAGGAGAGAATTTGCGTCATCTGGTTTTGGCTACAGGTTACGAATATATA
TTGCCAACACGGCATTGGCAAAAACGGCTGCACACCATCGTGCTCGTCCTAGTAGATTCT
TTCGATAATTGGACTAATTAAAATTTACTAGTTAATTATAGATGTTTGTAGTTCTGCGGT
TCTACTTATAGAATTTGAAAGTTATAAAGTAATCTAATGTGCTGAAAGTAAACTAACCCG
TTTTTGTTCTGGTTTGGCAGATCTGAGCGGCCAGCCGGCCAGCAGCCTTCTCGTGGATCG
GCCATCGGCGTGACGACGGCTGCCTATCCCTTTCCCTCCTCAACGGCGACTGTTTTTTTA
GGTTAACGAAGAAATTAGATTTTTTTCGAGTGAAAAGAAGTGATTAGACGAGACCTGAAC
CAGGTGTACGTGTATATTGTTTCTAGTCTTTTATATAAAATTTGGGCCTTTTATCAGTAT
ACCTGGGCCCTCGCAATGGAAGGGACAGTCGCACAGGGGGACGAAACATGGCACGAACTC
TGCGCGTACACTGAAAATTAGCTGCTAACTGATTGATACCAAGGGGCGACACGATCGTTA
GGGGGGGTCTCGCGCCCCCCTCGTCCCCCCTTGAATCCGTCCCTGTTCATTGCTATGGTA
CTTCAATACATGTCCACACGACACGGGCAACCCAGCCCCTCTTCCTTTTTTCCTTTAGGT
TTGCCAGTGCTTTCGACGATGTGCTTTAATGAAAAGAGATGTTCCGACTATAAATGTGTC
TGTAATGATTTCAATAAATAAAAGATGATGTACTAATTTAGTTTTTAAATATTTCTTTCG
TTTTAAAATTCTTGTTTTAGATTTGTCTAGATATTAATGTATCTAGTCATGTTTAAGTAT
TTAGATAACATTCATTTATAAACAAACATAAACAAGAATTTTAAAACGGAGGGAGTAAAT
ATATGTGCGTATGTATGAGTGTCTGATGTGTTAATAAAAACTACTGTACATCAACAACAG
CACGAGAGCACGTACAGGTACAGGAATGCTTCTAGTAGCTTCGGATTTGCCTCCCCACCA
TCGCCAGCTCCGCGTACGAAACGAAACAATGAGTTAAACCGTCCGATCCGATCGGACGGC
GGTCGCCCAAGTTGACCCCAGCGCATCGATTCCGTTCCCACGGACGGCCCCCGGCGGCTT
ACTCCGTCGCAGGCCACGCGCATTCATTATTCATCCACTGCCGCGAGCGTTCACACCTCT
GTCCATAACAAGATTCCAAGCCCCAGCCTCCCCCTGTCCATGGGCCTGGCCCTATAAATC
CACCGGTGACGTCCCGGCCCACCTTCCCATCTCGTCGTCTCCACGCTACCTTCCTCCCCC
CAAACTCCCAACTACCCGCTCTGCTCCTCCTGAGTCCTGACTCCGAGCCCGCTCGATCTC
CGCCGCAGCCAGCCATCCCACCGACGCCGCCTCCGTCCGGCCGCACGGGGAACCTCTCCA
TGGCCGCCGCGTCCTCCGCCACCTCCGTCCACGACTTCACCGTCAAGGTCATCCCCGCTC
CCCTCTCCTCCCCTTCCGTCTCTGTATTTTTTTTATTTCACACGCGCTGCTAGATCCCCT
GCTCGGCCCGCTCCCGGCTCCGAGCTATAGCTCGTGCTGTGCTTGCCTCGCCCTTTGCTT
GTTCCGGTGGATCTTCGTGCGGATTTCTCTGCCGATCCGTTGAATTTGACTGCTGAATCG
CGTCTGAATTCGCTGCCCACTACTCCTAGCTCGTTTCGCCTGATTTATGGAAACCGCGAG
GTGAATCGTGCGGTGGTACGGCTGTACTGAACGGGTTTTGCTTGGCGTGCAGGATGCAAG
CGGCAAGGATGTCGACCTGAGCGTCTACAAGGGGAAGGTTCTTCTCATCGTTAACGTCGC
ATCCCAGTGGTACGTACCACCTGCAACCTCGCATTCCGTCCTTCTTCACTTTCAGCTCGG
CTATGAGATACCTCCGACTTACAGGCAGTGCGTTGAATCAAATTACTATTTTGTCTGGTC
CACAGCAAATGAAAAAAAAAGTCCGAATCAATAGGTTATTAGCATATACTTGATTGTCCA
AACTAATGATCGTCTACATCGACTCTGTATTGAATAAATTCCATAGCAAAGCTTGCTTGT
TCAGCTACGCTGCTAATTATTCTATATGACCAATTGTTCCAGTGGCTTAACGAACTCCAA
CTACACCGAGCTGAGCCAGCTGTACCCCAAGTACAAGGACCAAGGTTTTTCTTCATCCAT
TATTTTTTATACCCTTTACCGTGTTATTATATGTATGTATTGTCATATGGATTACTGGGT
TTAATCTGCTTATTGCTAAATACTAGTTACTAGATTTAAACAACAAATTCCGGTTATTGG
ATGCTAACCTCTGTTCTTTTGCCAATTTGTGATTTTACAGGCTTTGAGATCTTGGCTTTC
CCATGCAATCAGTTTGGTGGGCAGGAGCCTGGCACCAATGATGAGATCGTTCAGTTTGCC
TGCACTCGCTTCAAGGCCGAGTACCCCATTTTTGACAAGGTATATTTGTGCTGTGATTTT
CCTAGGCCAAAGTAATGCATTTATCTGTTTCGGTGTGATAACGTTGCAAATGTTTCAGTG
GGATGACCCATGAATCTCCATTTTATTGTAAGAATAATCCATCCAAGAAGGTCTATGCTG
CGGTATTGAGCCTTAGTTCATATTGTCCGTCAGGTTGATGTCAACGGCAACAATGTTTCT
CCCCTATACAAGTTCCTGAAGTCTAGCAAAGGCGGCTTTTTCGGCGACAGCATCAAATGG
AACTTCTCTAAGTTCTTGGTTGACAAGGAGGGTCACGTTGTGGACCGCTATGCCCCGACC
ACTTCCCCCATGAGCATTGAGGTAACTAACAGCACCGTCATTCGCATCCCCTTGCACGCG
CTGAATCCTAAAGCACGAGCGATCAACATAACACATTAACACTTACTTTGTATATGTGCA
GAAGGATATCAAGAAGCTGCTTTAGAGCTCTTAGACCTGCTGGCTGGAGCCTGTAGAGAA
ATCTGTCACTCTGTACTCAAGAAACATGAATAATGTTGTGTCAAAATAAAAATCTGTACG
TAGCATTTCAGAGGTTGCATCTACTGTATTTTCTGCATCCTACTCTGTACTTGTTGTATA
TGTCGTGTTAATGAATTCAATTATCGTAGCTGTTTGATATGTATGCCTTTATTTGGATCA
TGCTGTTGTCTGGTCAAGTTTCTTAAGAACATAATTTATCACATTGCTGCATCAGCTTGA
TAGCATGCTGCAACTCCGCATTTAACTGCGCGGAAACTTTGCCTAATTTCGTGCTGAAAT
CATGGATAATATTGATAACCCCCACAAATCATGGATAGTATTGATAACCCCCACATATCA
CAACTGCTTAGGAGACGCTTCTGCCATCTGAATGTGCATTTCATAAATCTTCGACATAAA
ATGACTTGCTATTACTACTAGTTTATAGCTCACTGATATAAGTCTGCGGAACTACACTGA
TATTCCCCACTAAGCAAACGACATATCAATTTTACGTCTCTAAAAGTCTTAGTTAGAATT
TAGAACTACTTTTCCTCCTCGAATTTGAGTTTGGAAGTACTCTTCCGCCCACAAAATATC
TTTGGAAATCAAGTTTTCAACAGCTCGCCCTTACAACTGTCATGTTATATCTCCATCATG
TATTATCTTCATGCATATGACGCGGCATGGTGAAGCCAAGTGCTAACCATTGGTGAGGTC
GAAGCCATGGCGATCAAGTCTGACATCTTCAATCCTCGACCACCCAAACAGAGGCAAAGG
TGAAAATGGTTCATAAGGCATTGCATCCAGCTCCCAAGGTACTTTCAGCTCATTAAGTTG
GCTGTCACTGATCTTTGGCTCCTCCTTTTCCTCTGTCACTGTATAATTGAAGCTTCCAGC
AATTACCTGAGGTAACAAAACACGATACAAACTTCACTCTGTGAGCTTCTGTGCAAGAGA
GAACAAAGGTGGAAAAGATCAGGAAGATGTCATCGACTGTGTCACCGCAACTGTTTAGAA
TTTATGCATTAGTTTTTTTTTACTGTGGCGTGTGCCTGCACTTCCACTTGGTAAGTGGGA
AAATTATGTCATGTACCTGCACAGGGTCTGCTGCGATGAGCGGCCCTCCAACGCTACCAC
CAAACAAGCTGCCGCAAGGAGTAGAAACCATAATGCTTAGACCCCCATTGCTGTTTCCGG
AGCCACCCTCATCAGACAGCAGATAAGAGCCTTTTAGTGAAATTATCTCAAACTGACCCT
GCAAATCAGTTCAAAGATCAAGAGATGGAAATGCTTTGTTTTAGGACATAAAATGGACTG
AAGGAGGGGGGCTATTTTTTTCCCTCGCTACATAAGGGGATTAAGAATTTGTACTGGTCT
ATTAGCCTGCATCGAACTGATATAAGACAACCAATTCATTAATTGCTGAATGGGTGAATA
GTAGTAGCCAATGTTGGACACTGAGAACACTGAGGCGAACCTGGTAAACTGCATTGTCAA
GGCCACCTGACTCTGAAGATAGTCGGAGGGTTATAGCTGATAATGGGCCATTGGCTGATA
GAATGCAGATGGATTTGGACTGCAGCTCTGATAACAGCATAATCTTGGAGGTAATATCCT
GTGCATATAAGTACTTTCAGTTTGCTGTTAAGTTATCGACAACATATGAACAGTGTGCAC
TTGATGAATCTTCTATAGCCACTAAATTTATACCACACCCATTTCCCTTACGAATAGGAA
CTGAGTGATAAAAGTAGAAAGCAAATGAAATTTCTATCACATATCAAGACCATAAACACA
GCCACATCAAAGATCTGTGCTGAAGCCTAACAAGGGCAAAATTCTTTAGATATATGGATC
AAGGACTTGCTCAGTGCATAGAACATGATGAAAAGAAGATCCCGTACAGACTGCACTGCA
CAAGCACATACAGATAGAAATACACTGAAGCTCTATTTGAAATGCTATGGGCCTTATGGT
AGTCAAATAAATATGTCTTGCATTAATTTCGAGAACCTGCAGTTTGGTAGAATGAAGTTC
ACACTCGTCTAAATTTGGAAATTTGGTACCCCAACTTGTTTGGGACTAAAGGTTTGTTGT
TCTTGTTGGTAGTGAACTAGGAGACCAGACAAACATTAACGTTGATCATGTTGCAGATAA
TACACCCAAAAGAGCAGTAAACTAAAAATAGTAAAGTTACTGCATTCACAGATCAGTGAC
ATCACACAGTAAATTATCACAAAGTAATTTTGTAATTTATTCACATCATACAGTAAATTA
TCTACAGGTTCAAGACCCAGAGAAGCAGTACCACAATAAACCAGGTTAGACAGGGAAAAT
GGGTCATTCCTCAGCAGCTGAAGCACCATATTAATGAATAGTAAAGCAACACACATACAC
AAAAATAAAATAAAACTTGGTATTTTTCTTGTAATTTGCAACTTAAGAAGATGGGTAGGT
GCCTGAAGCTGCATACCTCTCCCCGATTGATAAGCAGTATATGTGGAGCAAATGCATTTC
CAGGTGAGCACCCTCCTGTTGATCATTAAAACATAAATTCAGGGCCACTTGATGAACACA
CAGAAGGGCAAGCCTTCTATCGACGGAGATGAAATTCTCGAGCAGTAAACTTTGTCGGTA
CGATGTAACATCCAGTTATACACAAACACAAACACATCACGTGCTTTCACTGTCAAATTT
CTAGACATTTAGAGTTGATACTCGTACCCGCTCTACTGTGACAAGAAGCTAAACGACAAT
TATGATCACGAGGCGTTTGCACATTATGGTGATAGACTGCACATGGAGAGGAGCACCATT
TATTCAGAGCAGTTGCTGAGAATACTGTCCATGAACAATATCATCTTATTACTTTGACAG
TGGCAACCATTACATCACCTCAGTAAGATCATGCGACTAGAAGCTCTAGCTAGTGGTTAG
GACGTCGTTCTCTCGGCTCGCTTCCCAGATCACCCTTTTTAATTTCAGGGCCCCAATAAT
TAACTAACTCCCCAGGCACCACACCGCATCCAAATCATCCCCACACCATAACAACTCTAA
ATAAAGACTACACGCACCGCACCAAAACAAGGCCCCGCCACTAAAGTATGGAGCGAAAGA
GCGCGAACAAATCAAGTGAAGAGCGAACAAACAAGGCGGCTCACTGCTGCTCGCGAACGG
CACTCACCGAGAAGGGCGAGCTGCGACTTCCTCCCCCGGGGCCTCGGCGGTCCGCTCCTC
CGCTTCGCCGCCTTCTTCTCCGACGAGGAGGCCGTCATCACCGCGGGCGGCGGTCGCATT
GCCGCGAGGAGGAGCGCGGAGGGCCCGAGACGCCGCCGCCGAGTTCGATGGAGGGCGGCG
CCGAACCCTAGGCGCGTGATCTTTTCGCCGTCTGCGTGCGGAACAGTGGCGTTGCAGAGA
GCTTTGGGTGGTTAAGTAGAAGAAGGTGGTTAGCGTGAGTCTATCATCCCTGTGACGAAC
TATACCTGTACTTGTTACTATTTGGGACAGAGAGAAGAAGAAAACTTACCGCTGAGAGGT
TATGGGCTTGGGTCTCGGCCATATCTTCTTTTGGGCTCGTTGGCCTTGCAGTCCATCTAA
TATCTGTCCGCGCAAAAGAAGTCCATCCAATATCTTAGCTAGATATGCTATTTTTCTTAT
GATGTTGGTCGTCATGTGTGGTTTGGCATCCCACATGACCCTGTAATAATCACTCTGAAT
CTGAATATCGTATCATTCCTCGTCATTGTACATATTAGTTAAAAAGTTTTTCATCATTTT
AGGTAAAATAACATAAAAAAATGAACGCCTCATCATTCTGATTGTTATCATAGTAATAAA
TGACCAAGTTATGACAAGGTTAAAACACTAACTATTACTCTCTCTTAGGTAAAAAAGCAA
AATAAAGACGAACTCCGACATCTTCGTATTGAAGAACACATATTAACCTATCTCCAATTT
GTGGGATACGCAAGTATTCCTCTCCAAATGGTATCATGGATGCTTGAATTGCATTTATCC
ATCCTTTGATTTTCAGAGCGTCTTCACTTTGAGATATCATGTATTACCACGACAAATAAT
TGGGGTTGGCCGTAAGCTAACCATTTGCAAATCACCAGTGGTAAACATCCATTTAGGCAC
GGTCTCTGACAGGAGTACCTGTTAGTAATAATAATATAGTTAGCAAACTAGTTTTGTTNN
NNNNNNNNTATAAAAAAGATGGATTAGTGACGCAATGGTAAAAAAAATCTTACCAAGTTG
TCTGAAGTGATGTTATAAGGGCTCAACTGGTGCACTAGTGGCACATATCCATGATAAACG
TTGTCAGTCATGTAATTTTTAGCATGAATACGAATAAATGAGATAAGATGATTTTTCTCC
AACCAAGTAAGCTCGGAGCCATAACTGTAGTAGATCTGATCTATTATCTGTCGTGTAGTT
CTTGTAGTACGGAAATAAGCCAATAATTAAAAATAAAGAAATTTAATCATGATCAGTACC
AGATACTTTTGAATAATCAATATAAATTACCTAACAAATCTGTTGACAAAACGCACCTGC
ACGTAGAACTCGAATCAAGTCATCCTCCGCATGCACCCAAATTTCTATATTATTATCACG
AACATCATCATTACCAAGATCGAAGNNNNTGTTCATGTCCTCATTCAACCCATATGCCTC
GCTAAATGCTCTCCAATTAGAACAACCAAAATACGTGTGATCTTCATCATTTTTTACCTT
GACAACAAAAGTGAACTGATTTGTTCTTAGGTGGGCTATCTTAGGCTTTGTACTGTCCTT
CTCTTTAAATGAAACTTGTCCAAAACAGCAAATCTTGCATGACACGGAACACACTAGTTC
AATTGTACAAAATGAAATTAAAGGTTAACTAAAGCAAAAAAATACACGTCATACATGACT
AACAAAATATACATTCCGTCTTTACATATCGTAATAATCGGCGCCATCTGTCTGCTTGAC
AGTGAAGGACGTATCATTGTCTAGGTGAGGATAACGGTCGCATATACCCATGTCATCCCA
TCATAAATGGCACACAGGGATCCTATCGTCAGGGGACCACACAATTTCCTGTGTTCATAA
TTCTATATAAGATTAAAAATCACAGACATTGGATAAATAAAAACCTATCCTAAAGGCTAC
AACAATAAAAAAACAAAAATCATGCAACGATGAACCTGCCGACACTAAGAAGCTTAATTT
TTTCNAGCAACAAAGTCAAAAGCGCTTGTCCTGCAATAGATATCAAGAGGAAAAAAGGTT
CTCTTTCAGTTACAACCAATAATCAACTTAATACATCTCGAATATTATCGAATATAATCT
CGAATACATCTCTAGTATAATCTAGTTCACTCGCGGTTCCTGATCAAACTGATCACCCAA
AGAGTTGCCGCTGTACTGAGGCGCGGCTGGTGGACACCCACAGAGAAGGAACC