Contig Data
morexGenes
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Map Locations of contig_54892 (6070 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54892

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68506 2 617 bp AK357851 Available Available None
MLOC_68507 6 1957 bp MLOC_68507.1 Available Available LOC_Os03g62680.1, FRAME:-3, EVALUE:1e-95, 13103.m06937 protein hypothetical protein
MLOC_68505 1 351 bp AK357851 Not available Available None





CDS Structure of MLOC_68506






CDS Structure of MLOC_68507






CDS Structure of MLOC_68505






Contig Sequence (6070 bp)

>contig_54892 6070 assembly3_WGSMorex_rbca.fasta
ATTGTCACCGAGTGGATCGGTAGGATCGCCGCTAGGTTGTCCCACGCGCCGGGGGCGGCC
ACGGCGCGCGCCGGGGGGGGGGGGGGNNGCCGGGACTTGAGCTGCTGGAGCTGCACGACG
AGGCTGGGCTCTTGGGCATCTCGTCCTTCTTGTGCGCGTCCCACCTCTCGACGGAGTCGG
CGCGGCCGGGCTTGGTCTTGGGGTTGGAGGCGAAGGACGCCGGCAGGATGATGAGGCACG
GCCGCGTCGGCGGGGTCGGAAGAAGACCCGGGAGAAGCGACGCGGCGGCTTTGGCCATTG
CTCGCTCGACGGACGCCATCGGTGGTGATCGATCTCCCTATGTTGGTCCAAGAAACACCA
AGCGCTTTGACGCTAAGAGAGGAGGCGCCTTGGCGGCTTGGCCGGAGAAGGAACAGACGA
TCTGATGGGATGGAGTTGGGTGGGTGGATGCGTGCGCATATATATGGATGGAGGTTGACG
TGAAACCGAGTCTGGCTGGCTGCAAGAGAGACATCGATCTTCCGCAGTGACGGACTCCAT
TCCGAATTAGGGCCAAGACCGTGCGTGTTCGACTGCCAGTCGGCCACCTATGATCGACAC
TCCATTTCGTATTACTACCTTAGCTAGATGAATGAGTCGCGTCGTCGTACTCGTACCAAG
AGTTTTTTCTTTCTTCCTTCCTTTTTTCTCCGCACGTACGCACCAATCGGCAACCGACAC
GTATAAGTCAGGTTCGAATCGTAGTTTAATTTGAGATTGAGATACTTGGTTCAACATTGT
CGCTTATTCGGAATTAATGCTACAAGTGATCTACTACATTTCATTAGTCAGGTGCTAGTC
TCTCTCAGATCGATGCTCTTCGTGCAGTATTGTGATTTGTAAGACACAATTGAGCATGAA
AAACCCGGGTAAAAAAATCATGCCAATTGTTCAATTTATATTGTAGATCATTCCATAAAG
TAGAAGATAACCAGCGCCTTATAGTGGTGCAAAGGCGGGGTGCCTTCTCTCAACGCGACT
GGTATTGAACCTAGCACTGGAGTCGATGCTAAACGTCACTAATTGCAAATTCATTTGTAG
CGCCGATGCAGTAGCAGATGCCACTAGATATCTCAAATGTTATATTCGATGCAACATTGC
ACACTGCATGTACGTACGACTCGTGCTTTCACTTCACTTGTGGTACCGTGTCATGTAAAA
TGGCACCTTGAAGCCTTCTTCTTCTTTTTTCCCGGGCCATGAAATTTGACTTCTTAGAGT
TTTTCTAAAAATAATCGAACTTCTTACTATATGAATACGCACTTCGGCTTATTTCAAAAA
ATATCACTACTTTCTTGTGTAAATGTAAATATCTGTGTTGATGATGAGCACTGGAGGCTT
TCCTTTTGTTTTTGGTGAATTCAGAATGTGGCTGGTCATCACGGTGGGCATAAAACCCAA
AACACAAAGTCCAAACCCGAAAAACCCGAACCAGAAAAACCCGATCACTGTATCGGGTAT
CAATTTTAGAAACCCCAATTTAATACGGGTAGTTAGGGTATAAGGTCACGGTACCCAAAG
TGTTTGGCAGCGTAGTAAAAGTGCTACACGTATAGAGATGGCCCGGCCGAAAAGCTGCCA
TCGCTACTCACTTCCCTCAAAACTTACGGTCACTAGTGTCATGCTCAATTCCACCTCCCC
TTCTCTAAATGCTCGTGCGCCATTGGGTTGTACGATGATCACTACGATGCATGTTGTCGC
TTGGCTCAAATCGCTTCCTCCTCTTCGCGCGCTCCTCCAGACGATCTCGGGTTCAGAGTT
CGAACAGTAATGCCCGCGCTGCGCCGGATGGCCTCCCTCGAGCCTTGATGGCGTGCACAA
GTGTAGCGTCACGCCAATCCATCTGCCTAGCATCCTCCTGTGATGTGAAGTCTTCTATTT
AGGTAATTCGAGAAAAAACGAACCCGGATTTTCGGGTACCCGAAATGTCGGGTTCTTGTG
CTTTTGGCTATATTTCGGGTTTTATTTTTCATAACCCGATCTGATTTTTTTCAGTTAACC
CGAACTCCCGGCCTGAGCTGGTCAAGTCTGCCCTTCACTCTCTGCTTGTCACTGTTTCAT
GGATACATACACAAAATGTATGGATCATGATTTTGGCTGCAGTTCTCACTGCAGCACGAA
TATTTGTGACGATAAATGCATAGTAGTACGTCTGAGGTATCCATTCTGAACTCTGAAGAG
GAAGATGGGGCCTGCGGTCACGCATCGGTCGCTCTCTTTCACCCTTCTTTATCTGTTTAT
ATCAAGCCTCGTTATTATTCGGAGTGAATTCGTGGCAAAATGTGGGATTTTCGGCAGAGA
TTTGTACTGAAAGGAGAAATGAAAACACGTATGCAGTGACGCACGTACTTGAGGGGTGGA
GCGGCAGTATTTATACGGTGTATCTCTGGAGCTCTTATGAAGGCAAAACAGTCGTCGGCT
CTGTCTGTACGCCTGTTACTATTAGTAGTGTAGCCAGTTTCAGTTAAGGTACGTACGTAC
AATGGCGTCGACGGCCGTGGCGGACGCGAATGCCGGGGGGTTCGGGGTCGGGGCCGCCGG
AGTGGGGCAGGTCCTCGACGGCTCGAACCCGGCCATCGTCCGTCTCCGGCAGCTCGTCGA
CGGCCCCCAGTCTTCAGGTGGTGGTGGACTGGTGGTAGTGGCAGTTGGGCATGGACGTGC
CGTGTGTGGCAGTACTGAGCCTGATGTATATGTTGTTCTTGTATGCAGAGGGGTGGAGGC
GGTGCTGGGAGCAGGGCGTGACGCCGTGGGACCTGGGCGAGCCCACGCCGGCCGTCGTCA
AGCTGGTGCAGTCCGGCACCCTCCCCGGCGGCGGCGCCACCGTCCTCGTCCCCGGGTGCG
GCGGGGTACGTACTAACTAGCTCACGCTCTACTCATGATGAGAGATGTACTAGTAAATGA
GATGGTTAATTTGCATGCACTGGCAATCTCATGCACGCGCTCTGGGGCTGCAGGGGTACG
ACGCGGTGGCCCTGTCCGGCGCCGGCCGCTCCGTGGTGGGCCTCGACGTCTGCGACGCCG
TCATCCAGAGGGCCAGGCAGCGATTGTCGTCGGGGTCGACCCCCAACGTGACCTTCGTCA
CCGCCGACTTCTTCACCTGGGCGCCGCCGGAGCCCTTCCACCTCATCTTCGACTACACGT
AGTACCTCCCGAACCTTACAACTAATCAACACCTAACTGATTACCATTTAAAAACACTTA
ATGATTCCATTAATAATGTTTCAGGTTCTTCTGCGCCCTTGACCCGTCTCTGAGGCCGGC
GTGGGCGGCGAGGATGGACGAGCTGCTGCGGCCGGACGGGGAGCTCATCACCCTCATGTA
CCTGGTAATCACCCACTAATCCTGTCACTAAGAGCATATAAATATATATATACATACATA
TCCTCAACTATAATTATTTAGGAACCGAGGGAGTAATTATCAACGCTATAATAATAGTCA
CGCATGGATGCATTTCAGCCTCAAGACCAGGACTCCGGGCCACCATACAACACGACAGTG
TTCGAGTAAGCATCACATCCCCGCTAATTTCACTTACTAATACTATAATCCAATTCTTCA
GTTTTACTCTTGTCATGTATGCAGCTACGAGGAGGTGCTGAAACCACTGGGTTTCTTCAT
CGAATCCATCGAGGACAATGACGTGGCGGTCGAGCCGCGCAAGGTATATGCCCAGTCAGA
AAATCATACAGGACAGCAGTTTCTATATATTGTTAGTAATTCAGTATACCTGGTAACAAT
TGCAGGCTGTAGAAAACAGCGTGTGTTAGTTTCAGTCAGTTAGTTCAAAACAAAACATGT
CTAGTAGGAGTATATTGTCATCAGGTGACTAACTTCAGGTGTCAGTTTCTAATATGATTA
ACTATTTTCAGGGGCTGGAGAAGATCGCAAGGTGGAAGAAGACGCCAGCTGGAACGGAAA
CACCGATATGATATCACTATCAGACTTGCCCTCTGATAATCTCTAGTTTCCTTGAAAGAT
TCATTTTAAGAGTATTTTTCCTTTAGAAGGTTACAGTGGAGAGGCATGGCATGACATGCA
AAATATATCGATGCACACAACACTTTTTATTATAATTATTTACAAGGTCAATGTATTGTT
GTCATGTTAATGACACATTTTAAACAACATATGTGTGTTTATTTTCTCTTGAGTAAACTA
TCCTTCATCGATCCTGAATCATGCGGCCCAGTCATGGAATTTATGAATTGGTCTCACATT
GCTAGTTTGTGGTCATGGAAACAAATACCCGAGCGATGTTTTTGCAAAGTTGCGGAGCCA
CACAAGTACAACACACATCACACAGATGCTAACCTCACGAAACTGGGCTACTCGCACATG
TAATCCGCATCATTATTGGCGCTGTCTTCTGGAAGTAACCAAGTCAGGAATCCCTCGAAA
GTTTCTCTTTTGAGCCTCTGGGATGAATATTCAACAATCATATGCCACAACTCGCCGACG
GTCCATCCGTGCCGTAATACCCACTGGATCACCTGTCACAGTGGAACGATGCAAAGAATA
TAAGGTGAAGAGAACATAAAAGGGAAACCTGACAGCATGTGATTATGACCGACTCGATTC
GGCGGACAAAAGAAAAAGGAGGGTCCCTGCCTCCATCTAGAACCATCCATCACATTTAGT
TTTAGGCTTTAGTGTGCGAATAAGTTACTCCCTCCTTTCCGGTTTATTAAGCTCATCTTA
GAAATCACATCAACTTCAATCGTTGGTTGATTTCACACTGAAAACCAAAATTTAACAGTC
TGTATTTGCTTATTCCCAAGACAATTCAGTGAGTGGCCGTGGAACCATGAACACGACTAG
ACATGCAAAGCTACTACAACTTCGAAACTCAGCTAAATCTTATTCGTTCTACTTGTGTGC
ATAACTGCATATGCAAAAAATGTGAAAAGGCTTTCATAGTATTGTGGTACCTCTTCTAGT
CTTCTAAGTGACGCATCCTCAAAAGTATAGTAATTAACAAAAGGTCGGTGTGCCTGCAAA
ATAAGAGCAGCCAAGTATATTTGATCACTCCAACAATGTTGATAGTTGAATTTAGCGGCA
TAGACATTTAATGGGATCAGACAGATGAACTCCTAATCCTGAAAATTCCACTGTGTAATA
CAGTAACATTTTTCCTGTACCTGTGATGCAGCAAGCCACTGAATCATGCTCTTAAGTTCA
GGGTTTCCACCAAAAGCCCCACAACCCCAGTTTCCGGTTGAAACTCCTATACAGTCAACT
GAGTTGACACTTGGACGACTATCCTTGGAATTAGAATCCTGGAACCATGTGTTAAAAGTT
CAAAAAAAAAATGATCAAAAGTTCAGAACATATAGACACCATCTTCTAATGACGTGCATG
TATTTTAGGTCACTACTTATCATGTTAGACCTCATTTAAAATTATATACACATGCGACAG
AAGTTCATTCCGACAGTTTATTACTTTATTCGTCGACGAACAGAAAATAGATGATGGGGG
CAAAACTACATGCTATCAAGTCATTCTCTGAACCTTAGCGGAGATGGAGATGACTCATGT
TTGTCACTTGTGTTTGAAATTAGGTAATTCATAGAAGGATTCAATTAGCAGCAACTTCAC
AGGACTCATTAGGTAAACACCTGGAAAGGCTTCACATCGAACTGATGCTTTGATTGATCC
AAGAAACCAACAAATGCTTTGTTCACTTCCCTGCAGTGATGTAGTACCAGCAAAAACGAG
TTAGGAAAACAAATACAACTATATTTGTTACGAGGATAGCGACCACAACAAGCTACCAAT
AAATAATGAAATACTGTGATGCATTGAAGTGAAAGAAGAACATGGCATACCTTAAAAGAC
CACTCATTTCATACTGTAACTTAGTTGGACAGTCCAAGGCATCAATTGCTACAATCCTAG
TTTTTCGTCGACCCATTGCATAAAGGGGCTTCGTATCTAAATAATCACCGACAAAGCGGA
ATGAGGAGCCGTACCTGTAAGAAGCAAATGAAGTGTCCATTTACAATGTAAAAAATCATC
CAGTATTATG