morexGenes - Barley RNA-seq Database

Contig contig_54880
Source Contig contig_54880
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54880 (7216 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_54880

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68500	2	2912 bp	MLOC_68500.1	Available	Available	LOC_Os07g39360.1, FRAME:+2, EVALUE:0.0, 13107.m04077 protein transporter family protein, putative, expressed
CDS Structure of MLOC_68500

Contig Sequence (7216 bp)

>contig_54880 7216 assembly3_WGSMorex_rbca.fasta
GCGACATCCACGTCCTTTCACACGCCCCACTTGTCCCCTTTTCCACTCATTAATTCCTAA
AACAACGGTTGCATTGCCGAAATAACTGCTTTGTCCTGGCCCCAATAGACGTGCATCCAG
TGTCACCTTGCAAGGTCGCGCTGTAGAAACAATGACCGCGTTGCAGACACAATTTTTGAA
ATAACGGCCGTGTTGCAGAAACAATTTCTGAAACAACGGCCGTGTTGCATAAACAACGAC
CGCGTTGCAGAGACAACTTCTTTGTCCCGGTCCCGCGGACATGATCTCGACCGTTAGATC
AACGGACAAGGAGCCGGCGGGATGGTCGTGTGGATCAGTCGATAGGAGGTAACAGTTTTC
CTTAAAAAAGGGCAATGCTACCCGTCTGCGAGATGATAAAGCTATTAGATCGGCCGTCTC
AACAGTCGTCAGATGTCGTTCGAAATAGTCGTTCGAAATAGCCGTTCGATTAACTGTTCC
AGCCAACTCAGGACTTTTGCAACAACTAGCTTGTTGCGCTGAGGGGCTTTGCAAAAAGGA
CCTTGTGACAAAAGTCTACTGAGACATCAATGTTGGCCCGCCATGACTTGAACGCCTCAG
TCATGGAGCACTAACGGTCGACGGAGTTGTCGTGCCTCCTCTGACTGAGCACCCCGAGCA
TCTGGCTCTACTCTAGTGCCTCATATGACTCAGCACCCCGAGCAGCTGGCTCTACTCTAG
CACAACTACGATAGGTTGTTACAATGGACACTCCTTTGGCGATTTCTGCAACCGGAGGTA
TGTTTTTGAAACATGTGTCCTGTTGCAATGCTTGGCCTTGTACGCTCCCATCCCGGACGC
TCCTCCGACATTTTCTGCAATTGGGGCTTTGTTTCTGAAACATGATCCCTATTGCGGAAG
AAAAAATATATTCATTGTTTAACCTTTTTTTTGAAACAAAACCCGTGTTGCGAAAATCTT
TTGAAACTAGCCTATCGCTGGAAAAAAATCACCATCAAACCCTTTTTTTTCTTTTTTTTT
CTAAAACAATACCTTTGTTGCAGAAACCTTCTGAAACAATATGTTTGTTGCAAAAAAGAA
AAACTGGCTGCGCGAGACTTTTCATCAGCGTCGAGCGTTCGATCAAGATCAATCCGACGG
CTAAGCAAGCGGCGGATGGTGTGCATGGATCAACCGGCTGAACGATAGAGTTTTTGTTAA
AAAAAACCTACAATTGTGGTTTCGGATTACTTCAGCCAAATTTTTGTGTATTTGAGCAAT
TTCCTGAAAATAAGTTTTATTGATATAAAACTATAGACCGCCCTCTTTGGCAAAGACTAC
CGGCAGGAGTACTCAAGTATTATGTCATCAGAGACGGTAATAGAAAATTTGTTGCAGTAG
GTGGCACCATCATTTGCCTAATGCACTAACTGATGAAGCTTATGCTGCCAGTGGTGCCCA
TGTGCCGAAACAATCAAATATTTTGTGCCTATTTGAAAAATAACAATAGCCAGAAAGTTG
GTTCATTAAATGGGCAATAAGAGAGCTTTAAAAGAAGGGTCAACAAAATGACTGGAGCGC
ATCGCAAAAGATGCCTTAATCCTCGATTAAATGTACATTATAAAAAGGTTCTGGAGATGT
CATGGAAATTCAGAAATCCAATAAGATCAGGATTAAAAACTTGCTTGCACGCAGAAGCAT
ATACTTGTATGTGTACAAACAAGGGAAACGTGCTCGCCCATCCATCATTTCCAGCTCCAC
CATCCCTCATGTTCAATCAGACTTCCCCATCCCTCATGTTCGATCAGACTTCCCCATCCC
TCATGCTTAATTAGGAATCAAATTTCATCAATCAGTAGACCATGGTCAGTGGCATCCCTC
TGTAACGACAGAGCAGCAAGGAGTAGCGTTGCCGATGGCTTCGGCCGGGCTCCCAGAGGC
AGTCGAACCGAAGAAGAAGAGCAACATCAAGTATGCCTCTACCTGCGCCGTCGTCGCCTC
CATGGCCTCCATCGTCCTCGGCTACGGTACGCATATTGACCGATGTTGACATTGTCACCT
CGTCGTCTGTCTCGTAGTCTACCAGGGATGATGATTGCTATATGAAAATTATAAACTGTT
TCTTTCATGGCCGCTTGCAGACATCGGTGTGATGAGCGGGGCATCGCTGTACATCCAAAA
AGACCTCCAGATCACGGACGTGCAGGTGGAGATCCTGATGGGCATCCTGAGCATCTATTC
GATCCTCGGCTCCTTCGCCGCCGGCAGGACGTCCGACTGGATCGGCCGCCGCTTCACGGT
GATCTTTGTCGCCGCCTTCTTCTTTGCCGGTGCCTTGCTGATGGGCTTCGCTAGCGGCTA
CGCCATGCTCATGCTCGGTCGCTTCGTGGCTGGCATCGGCGTGGGCTACGCGATCGTGAT
CGCGCCCCTGTACACGGCTGAGATCGCCCCGGCGTCGGCGCGCGGCTTCCTCGTGTCCTT
CACGGAGGTCTTCATCAACCTCGGTATCCTCCTCGGCTACGTCTCTAACTACGCCTTCGC
TCGCCTCCCGCTCCACCTTGGCTGGCGCTTCATGCTCGGCATTGGCGCGGTGCCATCCGT
CCTTCTTGCCCTCCTGCTGTCCGGCATGCCGGAGTCTCCCCGATGGCTCGTCATGAAAGG
ACGCCTCGCGGACGCGAGGGTCGTGCTGGAGAAGATTGCTGACACGCCGGAGGAGGCCAA
GGAGCGCCTCGCTGACATCAAGGCCGCCGCCGGCATCCCAGACGACCTCGACGGCTACGT
GGTCGTCGTGCCTAGGAAGAGAGGCGGCGAGGAGAAGCGGGTGTGGAGAGAGCTGATCCT
GTCGCCGACCCCTTCCATGCGGCGAATCCTGGTCGCGGCGCTCGGCATCTTCTTGTTCCA
GCAGCTGACGGGCTCCGACTCCGTGGTGCTCTACAGCCCGCGCGTGTTCGAGAGCGCCGG
CATCACCGGCGACGACCAGCTCCTGGCCGCCACCTGCGCCATGGGCGTCGCCAAGACGCT
CGTCATCCTGGTCGCCATGTTCCTCCTCGACCGCGTCGGCCGGCGGCCGCTGCTGCTGTG
CAGCACCGGCGGCATGATCGTCTCGCTCGTTGGCCTCGCGACGGGCCTCACCGTCGTGGA
GCAGAACCCGGACGCGAGGGTCCCGTGGGCGGTCGGGCTGTGTGTGGCGTCCGTCCTGGC
CTACGTGTCATCCTTCTCCGTCGGGCTCGGGCCCGTGTTGGGCGTGTACACGACGGAGAT
CTTGCCGCTGCGGGTGCGCGCGCTGGGCTTCGCGGTCGGGGCGGCCGGCAACCGCGTTGT
GAGTGGCGTCATGTCCATGACCTTCCTCTCGCTGGCCGGCGCCATCACGCTCGGCGGCAC
CTTCTTCCTCTACGCCGGCGTCGCCGTGCTCGCGTGGGTGTTCTTCTTCACCTGCCTCCC
AGAGACGCGCGGCCGGACGCTCGAGGAGATGGGCAGCCTGTTCGGCATGACCGACGCGGG
CGCGGAGGCAGAAGATGCTGCCCCCGCGACAGAGGACGCGAGCTGCAGGGCCAGACTCTT
GGGCGCCTCGCCTAATTCCAGAGTTGATTAATCTCATGAATATTTGCGGCCGTGTCTTTT
TCCCATGGTAATCAGTTTGGGGCTTTCTACAGATCAACCGATTGATTTTTTTTGAAGAAA
TCAGCCGGGTCGTGGGTCACCGGATCCGGCACTTGCCGTTTGTTGGATGTGATCAATGGA
ATCTTACGGGGTCATTCCCTTCCTCTTGTCGCAGCTGTAGCGGGAGCAAAAACGAAACGC
GTCGCCATTTGAAGCAACGCCGCCCCGGGTTGCAGCACGAGCCGCAGCGTCGCCGATGTG
GCCATCGGTGTTCCATCGCAGCAACCTAAGACGTCGATGATGTTTCACTACATCACGTAG
CCGTCGCGGCGAGTTCCACCGCAGCAACCGAAGATGCCAACGATGTTTTACGGCAGCGTG
CAACCCGACGAGGTGAGTTCCATCGCAGCAGCCGACGACCGCCGGCGATGTTTCACTGCA
GCGCGCAACCTATGCGGCGAGTTCCATCGCAGCACCCGGATAGCCTCCGATGAAGCTTCA
TTGCAGCGCCACCATCGCGCGGCGGTGCTTCGTCGCTGCACTAACCGCCTCGGCCAAAGC
TGCATCGCAGCACCCGGAGCTGGCAACGAAGCTTCCCTGCAGCGAGAGAGGATGCAGTCG
GTGGTGATTTGGGGAAGAAGAATGGGACGAGAGGATAAGATAGGTGCGGTGGTGGGATAA
TTAAGAAATAAAGGAAAAGGGAGAACACACAAGTAGGCAGGACGCGTGTCGCACGCTGGA
CGCGGCTTACGAGAGACACAAAATTAATAGGTCGATTTTAAACAATTTCCAATCAATTTT
GCTAAAGTACTTCTAAATGCCTTATAATTATTACTACTAGCATAAATGTTAGTGCATTAC
AATGAAAAAAAAATGGTTTTAATCAATCAAGGTTGGCCGGATCGAGGAACTATGTCGTGG
AAAAATGGTGGCTACTCACAAAAAAAAGAAGGGATCGTTTGAGGATCGTGGCGTGAGCTC
GAGACGGAAGTATGGTTCCGTGTAAACTAATTTGATTGAACAACATTTATTTTATATTAT
TAAGGTGGCAAATTTATTATTAAAGAGAAAATGCATTGGTTGAGTTCGTAGTTGATTTAC
AACCCGAGCACCGACAACTTTGATTTAAAGCTATAAGCACAACCGACTTACTAACCGAGC
AAGGATGACACGAGGACATCACCCTTGCCCATTGCTAGTGACAACTCAATCACGGGCTAG
CTGCTTGCTAGTGCTTCAAATCTTCCACCAGAAGTTTATATGCTCACTGCCTTCGATGCT
CACACAAAGTTTTCAATTCCGTCACTAGGGCTGCTTTATTTGGCTTGTGTCAATGCATCG
TCTCTTAACACGTAATTATATGCGTAATAAAAACACAAGGAACAACTTGTACAATGCATT
GTATCTTACTCACTCCATCACAGTTTAGAAGACATGCACGTGTATCTAGGTCGTCAATTT
GACTTATATAAAATATATTGTTTAACATAAAAAATATATCATTAGAAAATATAACATCTA
AAATTTCTAATGATATATTTTTTATGATATATGCCTCTCATTAAGTTGGTCAAATTGACG
ACCTAGATACATGTGCCGGACTTGTAAACTGACACGAAGGGAGTATGTGTTGTATCTAAA
TTTAATGATTTGTGGCTCATGCATGCACGTGATTGGGTTAACACTTATTTTTTTCCCTAT
AACCACGTGTCAAGAGCTAAGATACAACATCACTATCTCTCTTCATTAAATACAATGCCA
CATAAGCAAAATGCCTATGAAACCGTGCTAAGAGACTTGCACTGGCACATGCCTTATGGG
CAAGTAGTTAGACATTTACATGTTTTAAGGTTAACATTTAAGTAAAAGAAGCACAATCCA
CAATACCATATTGTCAATAGAAAAACAAATTGTGCATAATAGCTCACTTTTTTTGTGTGC
AATAACACAATCTCCAAAAAAATAAACGTTTCTTTTATATATATATACACACACAAAAAA
GATGTGAAAATTCTTTATAGAGAATGCACATTTGTGTACCTTTGGATTTTTGGATAAAGA
AATTACTGCGACGTACCACTTGATACGTCTGCAACGTATCGATAATTTATGAAGTATTCA
TGTCATATTTGCCTATGAAAATCCTATATATACATAATCCTCTGAAAGTTAACCTAGACT
TTTTTGCTCCACCGCAACTCTCGTATCGAAGAAAAACCCATCTAGAGCCTTTCGAGTACC
CTGTCGGAGAGGGGGAAATCATCATCAGTGGCCATCTCCATCATTCCGACGGTGGCCATG
ACGAGGAGGGAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCTCTCTCTCTCTCTCTCGTTCTCGACATGCCCCGATCTTGATGTATCACGAGC
TTTGTTAATATAATTGGATCATATGATGTTTGTCCCTTGCTATCTTGTTATGATGAATTG
GATCTTTCCCTTTGAGATCTCCTTATGTTGGATTGAATATTGGATTTGAGCACACTTGAT
GTATGTCTTGCATGTGGATACATGTGGTGACAATGGGGTATTGTATTGGTTCACTTGATG
TATGTCATGGCATCTACTTGCGGATTGCGGGGACCTTGGGGATCTATGCATAGGGGTTGA
TTACACGTTTTCGTACTATGTTTTCCGATAGAAATCTTGGGGTAAACTTTGAAGTTCTTT
GTGTTGCATTGAATATGATGAATCTGAAATTGTTTGATGCATGCCATATAATTAACCCAC
GGATATTTGAGCTGACATTGGAGTATCTAGGTGACATTAGGGTTGATTGATGTTTATCAG
TTGTGTTATTTTACTAAGAACTTTAGGGCTGTTTGTGTCACCTATAGGAATATCCCAAAA
GATTGATCTGAAAGAATAACTTTAAGGTGGTTCTACTACCTACAACAATTTCATCTTATG
TTCCCCGCTAGATATGAAGTTTGCAGTGTTTCTTTGCTGCATGTTGAGGGATGATCATAT
GATTCGACTATGCTAGCATTATTGAGAGATTGCACTAGTGAAAGTATGAACCTTAGGCCT
TATTTCCAAGATTTATACAATGTTTTGCTTGCTGACTGCCATTTGCTACCTTGCTGTTTT
TACAATTTCAGATTATAAAACCCATTTCTACTATCCATACTACACTTGTGTCGCCATCTC
CTCGACGAACTAGTGCACTTATACAATTTGCCATTGTATTGGGTGTGCTGGGGACACAAG
TGATTTCTTGTATTTGATTGTAGGGTTGTTTGAGAGTGACCATCTTCATCCTACACCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACTTGAGGGAAATTTGTTGTTGTTCTACTAAAC
TTTGCACATGGAGGCCCAAAAACGTCAAGCTCTTTTCTGGCGCCGTTGCCTGGTAGGTGA
GTGCTTGAAGGTATATCTTTAGATCCTGCAATTAAATATTTTAGCTTCTTGTTTTTACTA
GCTAGTTTGGTTTCATAAAAGAAAATTAAAAAAATGGAATTTTGGTTGCCTCAATTGCTT
CGCCTTTTTAATGTCTGTCGTGAAAATGATGGTTTGGAAAACTGTGCTCAATTATTAGAG
GAAGAATTTATAAAAA