Map Locations of contig_54672 (5011 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54672

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68375 1 534 bp None Available Available None
MLOC_68374 1 778 bp AK249988.1 Available Available None





CDS Structure of MLOC_68375






CDS Structure of MLOC_68374






Contig Sequence (5011 bp)

>contig_54672 5011 assembly3_WGSMorex_rbca.fasta
AAGATCTGAATATGGCGTAGGAAAATATTGAATTTATGCTACGTTCCCCAACAAAAATTG
TAGCAAAAGCTAAGTGAAGCGATCATATGCTAAGCTTATGGTTGGTCCTTGTCCATCACG
TCATTCTCCNAATGATGTGATTCCATTATCAAATGATAACTCATGTGTATGGTTAGAAAA
TCTTAACCATCTTTGATCAATGAGTTAGTCTAATAGAGGCTCACAAGGGACACAATGTTG
TTTATGTATCCACACATGTATTTAAGTTTCCAGTCAATACAATTCTAGCATGGATAATAG
ACATTTATCATGAACAAGGAAATATGATAATAACCAACTTATTATTGCCTCTAGGGAATA
TTTCCAACACATTAATAGGTTAAAAAAATCTCATATGCTACACCACCTCTATATTCATAG
CATATCATTCCCTGCGCATATCTAGGACATCCCATAATCAAACCTTGTGATTTTTGTTAC
CCCAGAAGTATTGGGGAATGGGCTAGAACTTCCATCGTCGCTAGGGTTTTAGGTTCCGTG
GTACACCCAATATTTTCGGGTGCTGGACCTTCTAGGCTTATCCCGAAACTTTTGTGCTTT
CCAGAAAGTGTGTGTGTATTTGTCTCAGAATTCACCATCTGACCTGTTATGAACTTGTGT
ACTTACCTCTTCCCTCCTATATATCTCTCTTTTAGTAGGTGGATCTGGATCCAGTACCCA
ATCTTGACAAGTGTATGAGAGGAAGAGCAAGAAGGAAATGCCATAGAAGATCAAAGTCAT
TACATGTCAAGAGAATATTTGATTGCCATCATTCATTACAAGCTTTGGACGTCCAATAGG
AGACAAAACATGGGCTTCAAGATGAGGTTTCGGCTTGCTTCACTTGCTTGCAGGAGACGA
ACTCGGTGTACCACATCCTCATGCAATATGTGGAGGCTTCTCGACTTTCAAGATGAACAT
TGCCGACCCTTTGAAAAATGACTCTTAGAGGTTTTGATTCTTGGGTGACTCTAATCTACC
AGCACTTGTAAAGCAGCGGAACTCAAGATTTTTTAGGGATCTTGTTGTGCATTGTTCGAT
TCTGGAACTAGTGAGCCTCATGTTTGTTGAATGGGAAGAATGGACACAAGTTGATGGTTA
TGGAGTTTATAGTTTAGTGACAAGTTAGTTCGTCCTTCTTGGGTGGTGTTAGGTGTAGTT
GTTGGCATTGCCATTGTTCACGTGACGCATTTGTCTCTTGTATATGTTAATTTTATTCTC
TTCTATAAGAATGTGGTACATCATTAGCATACTCTCCAATAAAAGTTACATTTGCATTTG
GCGTCGCCGCGGCGAAGATAACAATGACATGATAAAAAATCATTGAGCCCTAGTTCTTCC
GTCACCTCTTGCAGCTCATCGTGTCTCGTAGCCATAGAACTTGAAGCATGAGCCACCATT
AACTAAAAGCCCTAGCTTAAGACCCCCGAACTTGTTTCACCCTCTCACTCCCCGCACAAC
CCGAACGAGAGTAGCACAGACAGAAGCGATGTGGGGAGGAAAGCAATCTCAATGCCGGCG
TGTCGACAAGAGGACCTGGACCCTAAAGAGAGGGAAAACACATGTGAAAACCAGATTCTT
CAAGGTATGCCCCATCTGAACTCAATAGTTTGAGATGTTAGTAGAAAAAAATTGTTGGTT
GAATTCAATCTGGGCCGAGCCAGTACTTTTAGGTGAGAAGTGTAGTCATCCCGCGGGAGT
TGAATCCGAATTAGAACCCGGACTGGATGAAACAAGTTCATGGGCTTGGAATCTACAAGA
TTGCATTCTTGTAGGCCCTCTTTTATTTGCGGGATTCTAAAAACATGGGAATAGGAAAAC
TATAGGATTGAAAAGTAATGCTCACCTCATAGCATCTACAAACAGACTTGGCAAATCCGA
CCCCTTAAACACCCGCGGACGCGGCCGGTCAATGACCGTACGTGTCTGCTTTGAGCCCTT
ACTTTTTCCTCCCCGTAGCCATATTTCTCATATTCTTTTCCTCATATGTCCAATCACTTG
CCCGTGATTAGTGGAGAATAAGAGAGAGAAAGAAAAGAATGAATAAGAAAAGGGAAAATG
TGGTATGGGATGGGGTTGTGTCCTACGTGGCGGACTGAACGAGCGTGTCCGGACGCGTCC
GTGAGCCATCATATCGTCCTCATATTTGAGATGAAAATGAGGAGTGCTGGTCAGTCCGAA
CGTTTGAGACGGGTATGAGAGATCTGGCTGACTTGCATTTTTATGACCGGTCACTAACTG
GACAGCTTGCCCGGACATCTGAGACTTATATGAGACGTTTGGTTATAGATGCTCTCAATC
CCACATAATTTTTTGATTGTTTGATTGCATGAAAGACAAATGGTTCTTTCACAAAGCTTT
GAGTGGATGCTAGAAATCTTATGAGAAATAGTAGAAAAAATTCTTAGAAAACTTTCTATA
GGATTTCAATCTTATGAATCGAATAACCAACAACCCTTCAAAATTCATATGAAAAGAGCC
CTTGGAGGAACAGGGCTTGCGTAAGTTGTTTATGTTCTTCTCTCCCAAGAAAGGGAACAG
AACAGAACAAAAAAGAAAAGAACAACCCGTTCAAAAAAGAAAGGGAACAGAACAAAAAAG
AAAAGAACAGAGCAGAACAGAGTCTCAGTGGAACAACATACGCACCGGAACTCTCAAAGC
GGAAGCCTCTCTCACCGGCGACGACGCGCACCAGCAGCGATGGCCCGCTACGACCGAGCG
ATCACCGTCTTCTCCCCCGACGGCCACCTCTTCCAGGTTGAGTACGCCCTCGAGGCCGTC
CGCAAGGGCAACGCCGCTGTCGGCGTCCGAGGCGTCGACACCGTCGTCCTCGGTGTCGAG
AAGAAGTCCACCCCCAAGCTCCAGGACTCCAGGTAGGCCCGTTCCTCCCTCCCCGCGCAT
GCGCTGCGGGATCGACCGGATCTCGTGGGTTTCTAATCGGAAATCCCCACCTCCCTCGAA
TTCCCCAGGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACGTCGCGCTGGCCTGCGCG
GGTCTGAAGGCGGACGCGCGCGTGCTTATCAACCGGGCGCGCGTCGAGTGTCAGAGCCAC
CGCCTCACCGTCGAGGACCCCGTCACTGTCGAGTACATCACGCGCTACATCGCCGGCCTG
CAGCAGAAGTACACGCAGAGCGGAGGGGTGCGCCCATTCGGGCTTTCCACGCTCATAGTT
GGCTTCGACCCCTATACTGAGAAGCCCGCGCTGTACCAGACCGACCCCTCCGGCACCTTC
TCTGCCTGGAAGGCCAACGCCACCGGCCGCAACTCCAACTCCATGCGCGAGTTCCTTGAG
AAGAATTACAAGGAGACGTCCGGCAAGGAGACCATCAAGCTTACCATCCGAGCCCTTCTT
GAGGTATACTAACTCACACAAATTATCATATCCGACCAGGAGCTACAATCATACTGCCAT
TTTATTTCATTTTGTTAAATGTGCGAGAAGCAGAATACCGACAATCGTGTAAATAAAAAA
GATGGTAATTGCTCATCTGAGGATAGATGCTCTAAGAGATGCCAAATGGACTATGGAGAG
TAATTAGCACAGCCGAAGGACACGCTGTAGAAAAAATACTAAGCATATGCGAAGGACACA
TTTTCATTCTTTTGAATGATAATATGTCAATTGACTGATTAATTGCCGCACCATGTGGCG
CTCAGCCGCTCACAATGAAACTTAGCTGCCCTTACTCAAGGTGTCAGTGGAATGCTCATG
TCTAGAGTTTCTGTGTGTTCTTTTGTTTTATCAACAGGCGAAGTGCTTGGTGTTAGTCAT
GGTTTACTGGTTATAGAACTCACTTGTAATACAAACTTAGGTCAGTTTCCTGATGCTTGT
TGCATTCCAAATACTATATCAGTAACAGCTCATGTGAAGACAGATGTTCTAAGATATGAC
AAATTGGTTATGGAGGAATTAATGTGGCAGGAATTTTTTTAATTCTTCCAAGTGATTATA
TGCCAATTCACTGATCTAATTGGAACACTCATATCTGGAGTTATGTGCCTTCTCTTTGCT
CAACCAGCAAAGTGCTCGCTGTTAGTCATGGTTTACTTGTTATAAGGTTCACTTTAGTAC
AAAGCTAGATCAAGTTCCTATATCTGTTTTATTGAGTCCATTCAAATCGCAGCAGCAGCA
ACAACAACCAGTAGCGGAGCCAGCGCCCGGCCACCCTGGGCACTTGCCCGGGCTCGCTCC
GTATACGTACGATGTACATGCCCTTTCACGGCTGGGTAAATCCAGATCGAAATCGTTGTT
CCCGGCCAGAATTGTGTTGGGCTAGGTTTCCTTTGGTAGCGGGCTTCGTGTGAAGTAGGC
CTAGCAAGCAAGAAAAGCCTGTTCGGCTGTTTATCAAAAAAAAAAAAACAATCGCAAGGA
CTGCGTATTGTGGAGACAAACTGACGATGGCGGGCTGAGGCAGGAACAACTTTGATCCTC
GCCTACTCGTCCCCTCCTTGCTAATCATATTATGTAAGGTTGCTAACTGATCTGACCATC
TACATGGGTAGATTTTGCGTTTAAATTTCAAGGTCAGGGCGTGGGCAATTAACTATTGGG
GCTGATCATGATTTCATGGACCTAGTCTTTTGCTTAGGGATTTGTTCTAAATAATTTCAT
GTTAACTTCAAAATTTGAATCCTAAAATTTCACACATGAAGAGGTTTTTTATTAATAAAG
AAAGCAGTCAAAATCTGAATTCGACTCGAAAGTGTAAATGATGTGCAACCGTAAACAGAA
GCAAAGCTATACATTTAGATGGTAATTTGGGTAGCTAGACTTTTGTTGGCAACATGACGA
CTGACGAATTTGGTTATGTGCATGGCTTTGTTCCATGACTTTTGTTGTCAGTCACAACTT
TTTTTGGGTCTATGAAACTGAATATTGATATATTACATATTAATTCATACATTTTTTTTA
AATACCACCGCGGGGGGTGGGGGGGGGGGGG