Map Locations of contig_54553 (7511 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_54553

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68301 2 1303 bp AK369813 Available Available None





CDS Structure of MLOC_68301






Contig Sequence (7511 bp)

>contig_54553 7511 assembly3_WGSMorex_rbca.fasta
AACAGATGGACTTCAAGAAGTTCCTACGGACAAGTCCTATAAATATAACTTAAGGCAACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGATATATGCTCTAAC
ACTCGTGTATCATCGTCAGCACACCCGGTTGGCACCCTCATCAATGCTGCATAGCAGCAT
CTCTACCGCTCCCGCAGAGCGCACGCCTCCATGGATGCTGCTTTGTAGCTAGACTGTCCT
CCATCGATGCTGCATAGCAGCATCTTCGCCGGTCCCGGCAGCGCGCACGCCTCCATGGAT
GCTTCTTTGCAGCTAGTCCATCCTCCATCGACGTTGCATAGCAACATCGCCGGCGTTTCG
TTTGCACACATGCCTCCCTGGCTATCGTCCATGCACGCCGCATAGCAACATCGTTGTTGC
TCCCGCCGAACACGTGCCTCCATGCATGCTGCTTTGCAGCACGCCACCCCATCGAGGTTG
CATAGCAATATCGCCATCATTTCGGAAGCACACATGCCTCCATGGATGTTGCTTAGCAGC
AACGCCGCCGTGCGCGGCATCATTGGGATGTCGCTTCCGGCCGTTGTTGCGTTACATTGC
CGCTCATCGCGGCCGCCGCCGCAACAGTGATGGTGCTACAAGAAACGGGCGATTGCAACA
GGCACGGGTTGGAGCACATGGACCTTGGAGTCGCAGTGGCCGGAGTCTCCCTCCCCAGGC
CTTGCAATAATCACCTTGTTCAGTGGCCGGTGTCAACACTATCCTTTTTGCAGCCATGGC
AGCAGTTGCAGTCCATCTTAAGGACGCGGTAGGGGATGACTCAGCATCAATGGTGTTGGG
CGAAGGGATGCACTAGGCCATGGCCGGCAGCTCCTCCTCTTAGCTTCACGGCTGCGATGG
CGCTCGCGATAGGATTGGAGGCTCCTCTAACCACACAAGACGGCTGCGGTGGCGCTCACG
GTAGGATTGGAGACTCCTTTAGCCATGCAAGACGAACGAGTTGAAAGGGGAAAGCTAAAC
GAGTGGATGAGAGAGTTTCAAAAGAGATAAGCCTGTGCTAACTGCGAAGCAGTTGGTGAG
GCCGAAGAGGGTGCGTGGCGTGCGATAGAGGCGGTTTACGGGAGAGCGAGATCATCCCAT
GGATTTTAAGAGTTTTCCTTGAAATATTTGTCAATTGGGATGTAAAGCTAAAGTATATCT
TGAACCATGATCTGTTGTGGTTGGTCCAATTTATTTGAAACGGAGGCCAAATGTCCATTA
AATTAATTAATCAGAAGAGAATTTATATAAACCATGATACTCCGTTGAACACACATGACA
CCTTACACACACCTATGAAGGCTATAGTAAACAGTGGTCTCATCTCCTTCACATAAGATT
GTACTGGTGGGGCATCGTTCCACGTGATTATTACTCAGCCGGAGCAGCAATAGGCAACGG
GACCAAATCTCCCTCGCTCTTACTTTCCAATTAGTCTATTTTCCTTTCCTTTGTTCATGC
ACGCAACAACCAGGCTTTCATTTATTTTTCTTTTCGCTCAAGCTTTTCACGGCCAAGCAG
CAGCCTCTTGCAGGCGACTCTGACAAGCTGCGACGTCCATAACACCGAAACTTACGTGGT
CTGCGAGGCAGCTAGTTGGTCTGTGGGTCACGGCCAACCAGGTTTTGACTTTTTTAAAGT
TAACCTAATCTAACCCCGCTTGTGAAAAAAATCAAATTTGACCTTTTTTCCTATTGCCAC
CGGATATTTATTTTGGCTCTGGAAGCATATGATCCTGCATGTTCAAAATAGATGTGTTCG
TTGTCACACTCAAATGACACATACAAATTTACAGATCAAAAACCTAAGTATTTTGGCCTG
TGCAAAATGAACAAGTTGAACGACAACTTTTATCTTCAAATGTTACACTTAATTTTGTTT
TTTTCACCAACGAAGCACCGCTATCCCGTATGACATGAAATTTGACAAGCACACTTGCCA
CACTAATATGAACATCTACAAACAAAATTCATTTTTAAAAAAAATTTATTTACTATTTAT
TTTAATTTTACTGTTCATCAGGGAGCATATGCTACCAGGAGCCAAAAATCCACGTCCTAT
TGCCACCAGCTATAATGGTAGAGATACACACCCTACCGACACAGATAGTAACATTAGGAA
TCGATCAATATGGACGATTTTCTTCGGATCAACATAGTCAAACAGCCCTATCGCCGTTGT
TTCTGACGGTAGGATGTGTATACCTACCGCCACAACAAGGAAAAAAGGTGAGATCCAAAA
AAAATCATAAACGGATCAGATCAGGCTAAACTATGTAAAAATGATCTAAACTAAACAGGA
TCAGATCGGGCTAAACTACGTAAAAAGGCATGGTCATCAGCAAGTGGCATCATCATCCAG
CATAAATACGGGACAAAAGAAGAGAGGGTTTTTGGGTGGTCCGCCTTGTTAGAGTCCAGC
ATGGCAGACCAGTCAAGACAAATTTGGTGACCATTGTTGAATAGCCAAAAAGTGTCCGGA
CCGTCCCATCCGGACTCCTGCGGGCGAGTTGCCCTAGACCTGGACGGATGGAATAGCTTT
GTACAGAAAAATAAGTGATTCAGTACAGAAATATGACGGTTTAATCTACAGATGAGATGG
CCGTATGATATAACAAGAATATACTATCAACCAAATCGCAATTACAGCACTGCATCACAA
CGAGTAGGGAATTCAAGGCCTCGAATTGCAGGAATGTTCCGCAGATCCTCGGCACTGTAC
ATAGGGAGAAACCAGAGCAACTTTTTGGTGCCAAATACCTGCAGTACACAATATTTCAGA
AGGTGCGTATGGAATTAAGGAGATTGGACAAACGGAAATGCAGGGGAAATACCTGCTCCA
AGTTTTTTCTCCATCCTAGGTCATACTCCCATGAGCATGTTTTCTTTCGCTCATATACCT
GGAATTAAGTTAACCAGTACAAAAAAATCATTTGGGCTATGCCAACAACAGCAAGTCACT
ATACAACCAAAATATCGTCGTTCTTGCAAGAAGTTCAAGCTGAAACCGTAGATTGTTCTT
GTACAGTTGTACCAGTGAGTTTAACTACAAACAGAAAAATTGGCTACCACCATGCATAGA
AAATCGCCTCTCACAAACAGAAATAATAAGTTATGAAATAATAGGTTATCAAGTACTCCC
TCCGTTCCATAATGTAGTGCGCCCGCGCTTTTCAAGATTTAAGTTTGACCATAAATTTAA
CCAACTTGGGTGACTGCGGCGGGAGCAAAAATCATATCGTTGAATTCGTATTCGGAAGAA
GTTTCCAACGGTATAATTTTTACTCCCGCCGCAGTCGCCCACGTTGGTTAAATTTATGGT
CAAACTTAAATCTTGAAAAGTGCGGGCGCACTACATTATGGAATGGAGGGAGTACCAATA
TAATGAGCTACTCCCTCCGTAAAGAAATATAAGAGTGTTCATACATCACGGAGTAATGAT
CTAAACACTCTTATATTTCTTTACAGAGGGAGTACATGATATAATTTGAGCAGGTGTGTG
AATGTCAGTTGGTTACACGACCTACAGATCAACCAGTAACTCCGAATAAATGCAAAACGA
AGTTTAACAGTTCAATCAAGGAATTGAGTGTACTTATGAACTGTGGGAAACAGGAAACCA
AAAGTATTCACATTACAAACCCTTTACCTCGATAGAAGTCGTATTACTGGCAACAAGAGA
CGTGTGCATGCATATGAAACAAAGGAGGCTCAGCGCAAACGCCAAATTTAGAACTGCAGT
AAAACATAGGAGTAGGGTAAGTTCAACCACAGACCTTTAAGATAAGTTTGAAAGAAAGAG
GCTTACCGAAAGCAAGAAATAGAATGGCAATATCACCAGCTGAGCTGGGGCGCCCACTTC
CATCACGAAAGAAGATAATAAAGCTTGGAAGTAGCACCAATGCATCCAGCACAGTCTCGA
GGAAAGTATACACCTATAATGCAAAGATAGTGCACTTAATAGATTAACAACTAGTACGGA
AGCTAAAGAAGCAAGTTGAGAACATAATTATAGGAAGTGTATCAAGAAGACAATTGACAG
GAAACAAAATTATAAGTAACTTGTGTTGTAGTTTGTCTGTGCCCTTATGAGTCGTAAGGC
TTGTTATGCTTATGCCCGACCCTTATATGTGGCTGAAGCCAGCCACAGTCCCAGCACGGA
GAACAGAGTACAACTGTCGTTAGATTTGGTAATTTAGCGATTATAACACAAGACAACGTT
GAAGGTTCTCGTTAAAGCTTTTCCATGTATTTCTGTTTTTTAAATCAATATATATTTCCG
TGTCTTTTCTTGCTACCTACAGTTTGAAAAACAAATACAGATGAGCAAGTCCGACAATCC
TAAACATGCAAATTCTGGTAATAATTTGTGCATGAACCTATCAGATAATATCACCACAAA
TATGGAAGTGCTTATTGTCATCGAGGAAACAACACAGAAATATGAGGCTAAGAGCCTACA
ACATGATATCAAGCCAATAGGTGGCATAAATTTGTTGAATGAAGCTGAAAACGCAAACCA
CATACTCTAAGATACTAGAAAAAACACAAATATGTGGCTACAAAATGATAGCAAGCCGGT
GGCATAAACTCTCTAAGAAGTTTTAGCAATATACTGATTTATAATTTTGTGTTACATTAT
GATACTATTTGGTGAAAATCTGTTCGGAGGGCATCATTTTTAGTTATTCTGCTATTTTGA
AGTGTTTTTTTAGAAAAAAAAGCAATAACAATTTGATAAAAGCATGACCTAGGCCAAAAA
GGTTTAGGTGGTTAGCCCATAAAATAGTTCAACCTATTTTGCTTACAGCCAAAATCCAAA
CAACCTGTAAGGCCTAGTGTGCCTGCATCAGGTTCTCATCAAAATAAGATTTCGTAAGGT
AGATTTAGGGCCAAAAAAGTAATCTAAAATCTTGTTTCGCTCTGGCACGACAGAACTAGT
ATATCCCACAACAAAAATACATGTCTGTGAAATCACTCTAGCATGGTTTTCATACAAGTC
CAGAACAGGTATAAGAAACTAATAGCTTACTAATGCAAAATATTTTCACTACACCCAATC
CTAACAGAACAGCAACTTAAAATCTTGCTGAAGTTATATAAAAATGGCGTTCTCAGAAAA
CCATTATACACTTTTCCGAGATTAATTTCCCAATGAGTGTTCCAATCCTACCAGGAAAAG
GAGAAAGTACTTGTAATTCCTTGCTCCGACACAATTTACTACCCAAACACAGTGATGATC
CATTTTCAGTACGCATCTGTCACCTACATAGTCAAATACACAAGTCACAATAAGAATTTA
ATAGAAGGGATAGATGACTTTCATGCATTTATCGGTAACTATAAAAGAAAACCACACAAG
TTGCACACAAACTATGCAAGAACTTTCTTGTGCTTTTCACCATGCATTTCTGTAGCAGCT
TTATAGATCACCCTTTCGTGGGCTGCTTTTGGCATTGGAGTGGATTAATGATAATCCACC
TTACCTTTCGAGCTTTTCTCTATTTTACCTTTTGTTTAAATTAATGATAATCCACCTTAC
ACGACTATTTTTCCATAGCAGATTATAAATTAAGTTCGGCGCAATACAGTTCAGCAACCG
TAAACTGACCGTTATTCATTGAAAGTAACATCGATACTAAAGCCACATTCAATCCAGTTC
ACTGACCATAATCCGGCACTTGCAAGATTTTTTTTTTAGAAAAGGAGGATTACCTCCGGC
CTCTGCATCAGAACGATGCATACGGCCCCTTTATTAATCAAGCGACGAAAGAGCGGCAAC
ACAGAGTCTTGAAGAAAGAAACAAAATAAAGGGAAAAAGATAATAAAAATGCCACAACCG
GCAAAATAGGCCTAGATGTGTACTCATCTATCCTATTAGTGGACTGCCATCCAAACCGGT
TGAAGATATCCCGCGCTACCGTCTCCCATCGGGTGGACCCAGTAACCAAAGGCTCCCTAG
TTTCCACAGGAGTTAGTAATGACCAAGTACGGATCGATGCAGCCGCTCTGTGTAGTACCT
GCAAAAAATGTATATTTGTATGTCTGTCAAAGACCACATCGTTCCTACAGTTCCAAATAG
CCCAGAAAAGTGCACAAACTCCAATGCGGATATGTCTAGCAATAATTAACGGAACTCCAT
GTAGCCACGTTCCAAATAACGTGTCAATGCTGTCCGGAGGTGCAATATTAAAGGCTATTC
GAACAGTCTGCCAAAGAACTTTCGCAAGAGGGCATTGGAGAAAGAGGTGTGAAATATTTT
CCTCGTTGTCACAGAAACTACAGGTGGTGTTACCCTCCCAATTTCGTTTAGCCAGGTTGT
CCTTTGTTAGAATCACCTTCTTGTGTACAAACCACATGAAGATCTTAATCTTTAAGGGAA
CCTTTACTTTCCAAATATATCTAGATTTTGGGATGACACTTGTATCAATAAGATCAAGAT
ACATAGACTGAACTGTGAATACTCCACTATTTGTTAACTTCCAACGCACCCTATCAGGTT
CGTCAGAAAATTGTATCTTGCAAGATCATTCGCATCATAACCAACCAACATATATTGGAT
GACAAAAATCATTTTTCCTGAAGTATGAAGGTTAGTTTGAAACAATGGCATGTTATAAAT
TAATTGACACCATGAAGAAGGCTGACTTACAGACAAAACAATGATGGTAACGTGGAGGTT
TGCCATTTTGACAATGAGAGCAATATCTAGGCGCATGTCCTTGCTCCTCTGAAGTGGATG
AAGGATTCGCACAATTTGTAGCAACATTATCTGATATGGTGCTACTGTTGTTCGGATACA
TACCATCCTCTTCAGCAGCATGTCTCCAGTTTCCTGGTACAGCTCCAGGATTCGTAAAAA
CAACCATAAAGTAGCACCATAGCATCATTATAAGTTGCAGAAGAAAGAAGAACCCTGAAG
AAATTTAAACAAAACAGAAACACACATAATCATGGCCTGATTTTCTCATTTTAAAAAAAG
AGAAATCCATGATAGCAAATAATGTAAGGCGCTTCATCCATATGGTGAATAATTTAGTCT
AGTTGGAAGAAACCAACACATCCTTTGTCATACTCAATGTTTTAGAACCGAAAATCTAAA
AGCTAATAAATATAGTTTGGTGAATAATAAGATAGCGGCTCAAAATATCACGTCTAGGAA
TTATCATCAAATATGGTTCAATCTGTATGCTACGGCTTGAAGCATGAAAAATTAGTTAAA
CAAGAGTATAACCATAGCATCTGATGATGTTCTCAATGCTCAAAGTTAAGAATAATAAAG
GGCCCTCAAAAGGTAATTTCAAAGGATATACCGTATTTCTTGAGATATAATTAGTTCAAT
AAATATATGATGCTGGAGCATATGCATCTATCATGTGTTAGTCCGGAAGACATCAATTAT
TCTTAACCTGAACTAAGATTCATATTGCACAATTAGCTGCTCTTAAAAATGACTAAGCTG
CCTTGCAGTTC