Map Locations of contig_54480 (9346 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_54480

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68262 3 2195 bp AK361089 Available Available None
MLOC_68263 2 1249 bp MLOC_68263.1 Available Available LOC_Os04g56070.1, FRAME:-1, EVALUE:2e-41, 13104.m05826 protein COP9 signalosome complex subunit 5b, putative, expressed





CDS Structure of MLOC_68262






CDS Structure of MLOC_68263






Contig Sequence (9346 bp)

>contig_54480 9346 assembly3_WGSMorex_rbca.fasta
CCATGCGACGTTTCCCAACACTAAAATATGCCCACATCAAATTATTATTAAGTTAACTTA
CAACTTTTGCAAAAAAAGAAGCAACTTAATAATAGAAGAGTCTAAATTATTCGCTTTTGA
TGAAGGGAAATCAATTAGTTTTGAAATACATGGGAAAAGTTGATGTTAATAACTAATGTT
TGTGCTGAAATAAAGTAGTTTGCACTATCAAAAGCAAAAAAAGGGCATGAAGTAAAATTT
ACCGTTTTCAAACCCATGAAGTCTAAGATATGTTTTGCATAGGAAACAAGCAGTAAAGTT
TCAAAAAGACCATGTGCGCACCGAGTAGTAATGCTGTAGAAACCGATGGAATACTTCTCC
ACTTATGATCAATAATGAGTAGATCAACGAGCTGAGATGCCATGGATGACTTGAAATAGG
TTATATCCAAAGAATAGTACTGCATGCAAATACAGTTAGAACAAAACTAAGCCACAACTT
TTAAAGATCATATAAATAAGAGAATTGCATTGGCCGTGTTACCTGTTTGCAGTGAACACC
AAAATCTTCTGTCTTGTTGAGTGGTATGGCCTGATACTTCACATGCTCATCTGGGGGCTT
GTAATCTTTCAGGTATGTCCTAGCTAAAAGCTCCACTGTCCACTTTACCAGCAGAAACAG
TGTTTGTAGGGTCAATCAGAACAGCCAAGAATAGTTGCATAAACTCTTGATTAAGCATGT
CAGTTGAAACATCAACGCCGTTCACCCAGCATGCGTAACCAGGATGTGAGCAGTACCAGT
CAACCACATCTTCCAACATTCCAGCCTATTCATATGAAAAAGATATGCAAGTTAGTTTGA
TCATTATTTAACGAGAAATACTGAACACACACACCTACACGTGCATATTACTTCATAAGT
TCACATACACAGTTGCAATATTCGCTAAATTTTGTTCTCTGCGAAAACAGATTCAACGAG
CACAAATGTACAATCAAGTATAAAGACGACTTGCCGGAAGTGGTATTAGTATCTGGTAAT
AAATTCAGAGTTCAAAAAATAAGCATCGAATGACCATATAATTTTCCAAAATATGAACAA
GATGATTTGCTCCTTGAAGTAACGGTGTTGCGGAAGAATGGATATGCCCCACACAAGAAT
TCATCATATCGGAAGTTAAATAGACACCCATGTCGGGTCATAAACTGTGATGCTTGCTTT
TGGTTTCTTGTTTCAGGAGCACAGTTATTGGGTTGCTGTACCATATTATTTGGAGGGTAA
GTCTGGTTTATAAACTGTGATGCTTGCTTTTGGCTTCTTGTTTCAGGAGCACGGTTATTG
GGTTGTTGTACCATATTATTTAGAGGGTAAGTAAAATCATAGTTGTCATTCTTTCCATCT
GAACAACCATAACTGTTGTTTGAAACCAGAAAGTGTAAGGTAAAGAATTGAATGGAACAA
ACTTGGAGAATAAAAGACGAATTAGAGTATATGCTACCTTATTTGCTGATAAAAAGTTTG
TTTCTTTATCAACAGTGTAATTGTTGGTTTCACAAGATGAAAGAGAAGCGGCATTTACTC
TTGAAAGAATATTTTGATTTCATTCATTCATGTTGTTGTGATGTACAATAATAGATCTGT
ATCCTAGGAAAAGGGGGGCAGAAAATGGAAACGAATCAATCTGTTTGGCCAGTGAGCCAG
CCAACCGGTGCATTCGGAGCGCACAAGCAGAGGAAACTACGCACGCGCATAGCAAGCACA
GAGGGAGGGGTGGGAGCAGGCCATACCCGCACTTGTCGCAGAGGAAGGCGAAGCCGCCGG
ATCGCAGCGGCCAGCCCTTCCTCCACTCCCTTGCCTTGCCGCTGCAGAGGGGCTGGTGGG
AGCAGCGACACCTTAGCCTTGCACATGAATTAACGAGGGGATTAGCGCCTCCTTCTTGGT
AGTGCATTGGGCCTGCACCTCAGGCACGGTGGCGGCGATGGGAGCACGGGCAAGGAGTGG
TTGCTGCTGCCGGCGGTGAAGGGAGGACGAGAGATGGAGGGCCCAGAGTGGCGGCGACGG
GAGCATGGGCAAGGAGCGGTTGCTGCTGCCGGCGGTGAAGGGGGGACGAGAGATGGAGGG
CCCAGACACTGCGGGATGAGGCGCGCCGGCTACATCGGCATCAACCATGGCATGGGTGGG
AGCGTGGTTCTAGGCGCATTGATCTGGAGGATCTCTCGGAGACGAGGCGAGAGGGAGGAA
GAGGCGTGCTAGCGAAGGAAGAAGAGGAGCAAAGACCGTGTCTCTTATCCATCGAGCACC
GTAGCTAATGCCACGTGGACTATACGAGCGGACGCCCTTTCTGCGTACGTTAATGTGTTT
GATTTGATCAAGAAGAAGAAGAAAATGACTTGATACATCTTATTTTTGAGAAGATTCTCA
TGTATTCAACAATTGTGAAGTTAGTACAAATAACTCGAGAGTAACACAAATTTACGTCTA
GATTTACACATTACCTAGCACCAACTAGAAGCAGTACAACTTGCCAAGGGCGCACTGCTG
TCATCCCCCCTTGCTTACCGGAGCCGTACAAACCTTGTTGTGGCGGGCAATCAGAAAGTC
ATCGTGCTAAGGCTTCACATGACCAGCTTGATAGAAACAACAACCATCCTTGATGAAGAG
TATCATAGTTCAGAATAATCTGGTGTGCAAACACACAAACACATACTCACTCAGACTCTA
TCCAAACGGATCCACCGAAGACAAACGTCGCTCGAATTCAACGAGTTCCGCCAAACACAC
ACATTCATAAGCTGTCCAACGATGCTAGACGCACCATCGTGATGGGGCTAGGCGGGAAAT
AACCTTATTCCATCTTCACGGAATCATCATCCTAAACGAACACATAAAAACATGTAAAAA
CAGAACCCTCCTACCAGTAAGGGTCAGAATCCATTGTAGCTCGGTTGCCCAAAAGCCACT
GAAACGAGGCCAACCAACATTGACACCAACGAGATGCAGGGAAAAACCATACCAATGTGT
GTGTGAAGGATGCACACAAGGGGGTACACGGGTACAACACCCGATATAATTGACACTTTC
ATAAAATCACCTAATAGAGAAGTTATCGGGCTATGTATATCTCTGCTTGATATTGTAGTG
AGCTGCTCGAGGAATAAAACTAGTGCTTTCATTCAAAAAATAAAACCCCGTCAATTTTGC
TTTTTAAGACAAAACGACTAGCAGCTAAGAACATCTTCAATAAAAGATGCAAATTTGGAG
ATGTAAAATTTACATCTTCAAAAAGTGTTTTGTACATCTTTAAAAAAAGCCCAACTTTAA
GAGATGATGCAAAACGAAGATGTAAAAATGCAAGTCCAATAGGTGATGCAAAATGAAGAT
GTAAATTTTAGAAACTTCAAATACTTTCATTTCGAACATAATTCAAACATATGAACTTCA
ACTACTACTTCATTTCGAACATAATTAAGCATACATCTAATTAAAACTTAATTAAACATA
ATTTTAATTTGAAGGACTACTACTAGTTCACACTACTACATCCATCCAACTACTCCTCTA
ACAACTACTACTAGTTGGAACGCTTACTACTTGAAAATGAACTACTACTCGTCCGAGCTC
GTGAATTGGTCCCAGAACTTGTCCTTGATCGTATCGTCGCACCCCTCGTCCTCCTCATTC
GAGTCGCCCCAGTTCTCCTCCAAGGACTCGATCGGGATCACCATCGAGGGGCCAGCCTCC
TCCTCCTCCTCATCCTTCTGCTCGACATCTCGCTTCCAGAATAACTCTTGCTCTGCTTGA
ACATGCTTCGGATGCTCCCGTGCGAACCTCACCATCGCCTCCTCGTCCCTATCACTGGGA
CTAATGACAATGGTGGACCTCTTCTTCGCCTTCACCTCCTCCATTCGAATGCCCCCCGGC
ACGAGCAACTCCGCATCCGCCTTGGTCTCTATCTTCGGGATGTTGAGGTCCGTCCTCGGC
CTCCCGGCATGCCACACCGCCATGTCGTAGGCACGCGTGGCCTCGTGGATGGTGGGGTAG
GTGCCGACCCAAAAGCAGCAGCTGGCGTCGCTGAACTCCACCCCGAGGTTGCCGGAGGGC
TTCGCTCTCATGCCGAAGAACCCTGCCTTGCTCTTCGAGGTCTTCCTCGGCGGCATGGCG
GGGTGGTGCGCTACGTCGGGGCGGTGCGATGGAGGTTGTAGGCCCGACGGGGCGGTGTGG
CGGTGGGTCGACGGAGGTATCAAATCGGGGTAGGGGGCGATGCGGCGACGGGGTGATGAA
GGTGTCGAATCGGGCGGTGGCAGGCCAAATCGGGCAACGGGTGGGCCGACGTTGGGCGGC
GACCGTCGGAACCGACAGCTGGGCCGCTGACGGCTCCGGATCTAGCATTGGGCGGCTGAG
ATGGACGAGGTGGACGGGCGGGGCGACAACAACTGTGAGGCGGGGGGTGGGAGGAAGAAG
TGGGGAAGAAAGGGGAAGTGGCGGTTGGCGGTTGGCGGGCGACTGGTAAATATACATCTT
GTGTAGGTGAAGATGTATATTTGCACTGTGAAGTGTTATTATCCTTTCGGAGATGTATTT
TTTTGCATCTAGATCATGTGTTGGAGAAGTGTTTTTGGACCGTGAAGATGCAAAAGTTCG
GTATTTTTACATCTACATATTTTATTGGAGATGCTCTAAAAAATATTGCCCATATAAATT
AAAATCAAAATTAAAATTTCTACTATTCATCTCTCCGATTTCATTTCGCTTCTCAAAGTT
TGAATGATTTTGGAGACAAAATTTAAAACCCGGGCAAACCCTATGATTTTTATTTGAAAA
TCTGGCAACTTGTGTAACCCACCAAAGTCGTGGTGGTAGTAGGAGTGGATGATATCTTTG
GGGTTTCCCACCCCGCCCGGCTACCCCGCGCTGCGCAGCGCCTTCATCTTCACGCTGACC
CCCATTCTCCTTCTCCCCCCGCAACTTCCCAGCCGCCTCGCCTCCCCCCCCAAAAAAATC
CCAACCTCCCTCGCCGCCGCCGCCGCCTCGCTCCACCCTCCCCACCTCCGCCGTCACCGC
CGACTTCCCCTCTCCCCGCCGCATCGCCTCGTCGACCGTCGAGATCTGCCGCGCCTCTCC
CTGCGCCCGCCTGCCGTACACCGTCGAGCGCCACCACGCCGTCCGCCGTCCAGCGCCGCG
TCGCCCCTTCTCCCGCGTCAGCCTCCTCTCCGCTTGCGTCGGAAACTCCGTCCTCACCGC
CGACTCCCTCCTCGTCCTCTCCGCCGGGAACCTCCTCTGCTACCTCAACCGCCGCCAGGA
GCTCCAGCCTGCACGCGCCGAACTTCACCAACGCGTCTGCTACCTCAGCCGCCAGGAGCC
CGGCTCCTGAGCTCCACCGCCGTCTCAGCAGGCACCGAGAAGGTGAACGCTGAAGCCCAC
CTCTTCCCCCTCCCCCTCCCTCTGTCCCCCCTGAGCCCCTTCTCTGTTCTTCCAGAGGCC
ATGTTCGATCTGATGCCTCCGTCGGGCTGGATCTGAAGGATACGCCCAACTATCCTTGTA
GCGCTTGCTACTCCGCAACAGAAGATTTAGCGGTTTATCCGAACCCGTTGGATCTAGAGC
TTGCTTGTCTCCTCTACTGCTAACTCATTTTGACGAAGTTCATCCCGATCTGCAGTTCAT
TAGGGTTTATTTACATGCTGACGGCTTCGCTGTTTTTCAGGATATAGATGGACCAGGAGT
TCAAGGAGTCAAAGCCCTCCGGCGAGCCAAACCTGTTCCTGCAATGGGGCAGCCGGAAGC
GGCTTCGCTGCGTCAAATCCCGCGAAGACGGCTCGCCGTCGCCAGCCCGGTCGGATGCGC
TCAGGCGCACCATACCCCGGGTGAATCGGCCCCTTCTGGGAGGCGATGTCGCACAGTTTC
GGTCACCACGCCGCCCGAGCACTCTCCACCGAAGGTAATTTCAGTATGCGTGCACAGACC
CCTTCTCCTTTGCCCTGCAAGAAATGTCTGACCCTGGTATTTGCTTGCGAGCAGGAAGTC
CGAGGCACAGGCGAGTGAGGCCAGGCAGTCGATGTCCCTCTCACCGGAGAAGGACAGGTA
CTACTCCACCAGGGGCTCCCCATTTCCCTTTGAGGGGAATGGGTTTGATTTCAGCGGTGG
AGTGGAAGAGAAGGGCACCGCTGCCCTGCCGAGGTTCTTCATCTCGTTGTCGAACAAGGA
GAAAGAGGAGGACTTCATGGCAATGAAGGGCTGCAAGCTCCCTCAGAGGCCGAAGAAGAG
GCCCAAGCTGATGCAGAAGTGCTTGCTTGTAAGTTGTAATGTTTCTTTCAGAAAATAAAC
TGAAGTTCTCTTCTTTCAACGATGCGTTCCTGCTCATTTCCTAACCCCTAATGTTTTGTT
GGTCGTTGTTGTGTATGGCCATAGACGGTGTGCCCGGGAGCGTGGCTGTCAGATTTGTCG
CACGAGAGGTATGAAGTTAGAGAGAAGAAGAGCTCCAAAAAGGTACCCCAGATCTCCTCA
TTTCCCTTTGGTTGCAAGTAACATACACTGGAACAGTTTGTTACATCTAGGATCATCGAA
TTGTTACTGTCGATTGCTGATATCTCGCAAATTCAATCAGCAGAGGGCGAGAGGACTGAA
GGCGCTGTGCATGGAGAGCGATTCGGAGTAGGAAGAGGAAGGAGGATGGATTCATTTTTT
GACTTGTGCTCGAGGCAGAGAAGCCGTACCTAGGTAGCAACGTTGGTTCATCTTTTAACT
AGGAAATGCTCAGCAAGCAGCTAATTTAGTGCCCGTTCCCGTTTCTCCTTATTCATCACC
ACCTGTTGAATCTCCATGATCCTTTCGTCTAATTGTCCATTGTCCGTTCGAATCGGAACT
CTGAAGAGATCGTTGTCTGGAAGCATGAACATTGAGCAAAATAGGTAGTAATATATTAGA
TCACCATCTCTGATGTTGCGTGTGGAAAATTTTATGGTTGTGGAATCGCCACAGTCGTTG
TGGATGAGCTGAGACTACAATGGCACCGGCATGTATTTATGAGCCATGTCTTGTGCGTGA
TCCCGAATTCCTGCCCCCCTGCTCCGTCGGTGAGGAGCATCGTTTCCATCGTAGTGTACT
ACAAGTGGTTGGCATTTGACTCTGTTGCTTGTTAGCTCCGTCCGCTGGTGCTTTGGGCTG
TGCTCTGATTGTGGCCTCGCTTCAGAGCTGCAACTTGTTTAGCATCACTAGCAAGGCCAT
TCGTTTAACCTAAACTTGATCATGAGCACGGAGCAGTGTTCATTTGAGGATGATGTGATA
GTTGGGTAATCCCCCCTACAAAAGAATAGAAACTCTGTAGTTCCAAGCGTGTAATGGGCT
CGGAGAAGAGCCCGGTTCTTTGGGGTTCTTTTCTGCACTCTGCGTTTCGGCCTTGATGCC
TTACATCGCGTGGCCGAAAGCCAGAAGGATTCCCCTATGAATAATTCACATTTTGCAAAT
ACATTTTCTTTTTAACATTTTTACAAAAACATGCCTTGAACATATTTTTCAAATACATCT
TAAAAAAATTAAGTACACATTGGAACAGTTTTCTGATGATAAGTTTTGTTTTTCTGGATT
ATGTAAACCTTTTTGTACATTGTATAAACATTTTTCTGAAAAGTTCAGAACAAATTTTTT
GAACTTGTGAACTTTTATTAATGTAACATTGTTTTGAAATTACACTAACATTTTTCTACA
ATGTACAAACATTTTTCATACATATGATTAACATTTTCTACTTTTTTTGAGTCATATAGT
ACATTTTTTATACAAAAATATATTTTTGTATACACGTTTAACATTTTCCAAATCTATGAT
TAATTATTTTCTAAAATTTATGTAAAATAATTTTTGAAATATATATACTCCTTGAATCTA
AAACAAATTGAAAAAATGTGGATAAAAAACAAAAAAAAGTAACTTAATGCCAGTAGGCGT
GCCAGGGCTACTGAATGGCCCAATATGTGTTGCCTTACGGGCGATGCGTGGTAGTGCTTG
CTACGAAAGCAACTAATCATTGAGTACTCCTTCGGGAGCCTTCACAACGGTCATTTTTGG
TGGACTGAGAGCGAGCCACTTGGCCCGCTCTTAGCCTACGATATGTGTCGCGTTGTAGGT
GTTTTCTTTGAATTTGTTTTATTATTTTTGTGTACGCGTTTTCGGCCTTTAGATAATTTT
TTACGGTGTTTTTCGGCTTTTCGACTTCCTTGATTTTGGACAAAAAATTGACTTTTTTGT
GTGAAAGAACGTGCTTTTTCTCTGCGAGAGGCACAAGTTTACTTTTCAAAGAGGCTCGGA
TTTGCTTTCGATAGGCCTAGTCATGCCTCACAAAAAAAAGGAAAACACGATGTTCTTTTC
TTGTGCAAGGGGCACATATTTACATCTTGTGGAGGCATGAATTTGCTTCCGCGAGAGGCT
CGATCATGTCTTTCGGAAAAGGAAAAAAACACAAAGTTTTTCTTTCATAGAGACACATAT
TTGATTCTGCGATAGGCACACTTGTGCCTCACAAAAAAAAGTAAAAATACATTTTTTTTT
CATGAAAGGCACAGATTTACTTCTCGTAAAGGCACGGATTTGGTTTGTCGAAAGACATAG
TCATGTCTCTAAAAAAACATGTCTTTTCCTTTCGCAAGAGGCACATATTTACTTCTCACG
AAGACATGAATTTACTTTCGCAAGACGTACAATCGTGCCTCTTAAAAAAAATGAAAACAT
GTATTTTGTTCTTGAAAGGCACCTATTTGCTTTTCATGTAGGCGTAGATTTGCTCTGCGA
GAGGCACAATTGTGCCTCTTCAAAAAAAAAGCATGCTCTTGATTCGTTTGTTTCATCCGG
ATTTTTTAATGAAAACAAAATTACTTCCTCCGTCACGGTTTAAAAGGCACAGTTAAATTT
ACGTGTGTTTTCACAATAGACAAGGTTTAAAGCGCCAATGCAATTACTTTTTTTTAGAAT
TCTCGCCTCTTTATTTATCAATGATGTTCATAGGTACAAGCATTGGGTCATGAGGCACAC
CCGGCCACACATGCCTACCTAAACCCAAATTACAAGCAGTCTTGGCGAGATTATGAGTTT
CAAAATTAACAATCCTAAGTTCGTGCACAAAAGAACAAAGAGCAAAACTATCTCTACGAA
TGATGATTTCATGAATAATAGCCGAATTAGGACCTCCTGTCCCATTATTAATATCACTCA
CCACTCCCAAGCAATCCGATGCCACCTTTAGATTTGATAGAAGAAGGTCATCCGCGAGTG
CTAAAGCCTCTCGACATGCAAATGTATCCAAAAGAACGGGATCGGTGATTCCTATGTAAA
CTAGAGCAGATGCCCCAAGGTACATCCTGTTGGAAATATGCCCTAG