Map Locations of contig_54476 (9993 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54476

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68259 1 1468 bp MLOC_68259.1 Available Available LOC_Os02g21040.1, FRAME:+2, EVALUE:8e-22, 13102.m02357 protein aspartic proteinase nepenthesin precursor, putative, expressed





CDS Structure of MLOC_68259






Contig Sequence (9993 bp)

>contig_54476 9993 assembly3_WGSMorex_rbca.fasta
AACTACATGACGATGCAACGAATACTTCTAATCACACGACGAAAACGGANNNNNNNNNNN
NNNNNNNNNNNNNGTCGGTCTCGGGCTGTCACACCAACACTACTCGCGCCGGCACAACCC
GAGCTCGCCCCTACTCCGGCACAGCCCGACCTCGCCGCCGCCGCCGAGGATGCCTAGGGT
TTTTTCCTTTTTCATTAATAATGTAACGCGTGGGCTCTCGTCGGCCTTCGTGACCGGCTT
TTAATGTTTAATTATGCATGTTTGCTGCACGCCGGCAAAAATGGGTTGAGCCAGCGTTGG
GCGCATGCGCCGACCCAAACGTCGAAGCGGACGTTCATGTCCGCCTGACCGACCAAAACG
GACAAAAATGACAAAATCAGAGAAATATTTTTTTGTAATTTTTAACCTTTTAATTATTTT
TTAAAGGAGTTTTAAATAAAGATAATTTTCAAAAAGGGTGGGGTTAAAAAAGGGAGAAAA
CACATGGCATTATTTCGTTTTAAAACCCAAGGAAAAGATTAAAAAACAAGAAAGTACTGC
TGAACAAAGGGCACTGTTTATGTTTTAAAACGCGCCGAAATGCTTTTTTTGTAAATTTTA
ACTATTTAATTTTAATTTCGGAAAAGGGGGAAAATACAGGGAACTATTTCGTTTTCAAAT
TCGGGGAGAAGGGCCCAAAAATATATATCAAGAAAGCATTGTTCATACGGGTTACTATTC
ATCGAACGTTAATGCTTACAGGAATTGCTGTTCATGTAGGGTTACTGTTCACCAGTAAAA
TATATCAAGAAAGTACTGTTCTTATGGGGTTACTACTTTTTTGTAAATTTATGTTTATTA
TTTTGATTTTAAAGAAGAGGGAAAATTGTGGGAGTATTGTTCAGGTGAGGCACTGTTCAT
TGTAATCATAGTTTATTGTTTGACCGTAATTACTATTTACAAATAAGTGATGTAATGTCT
GTTTTCATTTTTTTGGTAAATTCAAATTTTGAAGAAGAAGGGGAAAAATTGGTCACGTCC
AGCTCCAGCTCCACCTTCATCTTCTAGCCACGTCTAGCCGACCGACACGCCACGCCCAAT
CAATCTCCACCCGAGCCGCCACGGGCTGCCGTCAGGAGCTGCTGCGCCGCCGTGCCTTGG
ATCCGCATGACGCCGTCGCCGAAGACGCCGTCCCGCGCCGCACGACATCGAACAAGGAGA
AGAGAAATCTCCGCCGTCGCCTACGCCGACCGGATCGACGGTGCCGACCAGGCTTTGCCC
GACCGCGTCCTTAGACGGCGACGAGGAAGGAGGGAGGGAGAGGAGGCTGCTGGAGGTGAT
GGCTTGGGAGCCCTCCCCGTCGCCCACGGGAGCGAGGTGGGAGGGTCACATCCGGTGAAT
TTTGAATTTTGTTGTCTCCCTATTTGAGACTATGTGTGTCAACTAGGTGGAGAATCGCAC
AGAGTATCACCGACCAGCCTACACAGTTTCGCACTCGGGCACTGGAGCAATTTTCTTACA
ACACATTTTTTGTTTTATTGGCCTTTTTTGTCCAAAAAGACAATCACAAGATTTTATTAT
AGATGTGAGAAAACAATGTAATGCAATATTAAAATAATGTTCATAAATTTATAATTTGTA
CGTTATTTTTGAAAAAACAACACACTGTTTAAAAACATTCAGAATATTCCAAAAATGTTA
AAAAAAATAATCAAATTTTTTATTTAGAAATATTCAAAATTGCATATATTAAATTTGTAA
AGTAGAAGATTTTAATTTGTTTTGGCTAGTCAAATGCTAGGGATGTTGGGTATTTGACTA
GTTAAAAACAAGTCAAAACATCTTTGAAACCGGTATGGGTTGATTTTTGCCTTGTTTTGG
AAGTTGGAGGTTGTAAAGTACTCCCTCCGTCCCAAAATAAGTGTCTTAATCTTTATACAA
ATTTGTACTAAAGCTAGTATAAAGTTGAGACCGTTATTTTGGAACAGAGGGAGTAGATGA
TTTTAGAGTTCAGGGTTGAATGTTGACTAGGCATTTGACCAGTCAAAACCAGTCAAAACA
GGTTTGAACGGGCTCAGAGTTGATTCTTGTCCGGTTTTAGAAGTTGGAGGTTGTACAGTA
GATGGTTTTGAAGTGGAGGTTGTATCTTAGACTTGGGTAGTAATTCATGGTTGTAATATG
AACTCTTGTCTTTTTTTAGCTCGATGGTGTTATGTGTTTTGTAAGAAAACGTTTATTCAT
TACTTTCAGACAAGTCTTGCACGATCCGATAATGTAGCGATGTAAAGTAGCTAGCTAGCT
AGCTAACTGCGCTAGTGTCTAGATGGCACTGCTCCGGAGCAAAGAGGAGGCGATTCTGTT
GGAGGTCAAACGTGAAGCGCGTATCCAGCATCTGCCCCGCGCCTATAACCGTCCTCTCTG
CGTAGGGCTTGACGGTGAAACAAGCGTAGTTGGTATGCTTGTCCGTGACCGCCACGAACA
AGAGCTCCGGCTTGATGAAGAACACGGCCGATTCCGGGTGGAAGTGGAGCGTCAAGCTCG
GCAAGTGCGCGCGGATACTCTGCCACGCCCCACGGAAACACAGCTTGAGATTATGCACCG
GCCCCGATGCGCGCTGCACCCCGCGGCTGTGCAGATGCGCCACGACCTCGGCCGTCAGGA
CATTGTATGCGGCCGGTGCCAGCAAGGTGGACGCCGTCCCGACGTCGAGGGTGCACCCGC
CCCGGAGGCTACGCGGGTCGCGTTTGAACATCGCCGGCGTGATCGCCGTGAGCCTTCGCC
CGCTCAGGCTGATGCCGACGAGGCGGACATAGTACATGCCTCCTCCTTGGGAGAGTTCCC
CGTGCAGCAGCGCCGTGCTCCGTGCGTGCGACTGGTCCGGGATGTCGGCGCCGAACCGGA
GCAAGCCACGCCGGTCGCGGTGCTCGTTGCCGACGAGGCAGTAGGAGAAGCGCGGGGCGG
CGAGGCCGCGGTCCGAGAGCTGCCGGATGAAGGAGGTCGGGTGCCTGTTTAGGCTCATGA
CGCCGGCCCAGACGTCATGGTTAATGAAGTCGTGCGTGGCGTGCGCGCATCCGAAGACAA
GGCCGCTCACACCACTGATGGGGCTGCCGGGGCCGCTGCCGTCGAAGACGAAGTCGTCGG
TGCTAAGGTAGCCCTGTGCATGTGAATCATGGTACTGGAACTTGACGTCGAAGGTGCACC
GGTCCTGCCTGGCGCGCTTGTACGGAGCCGTGCAGCGAGGGTCTGTGGACGCAACGAGGT
GGTAATGAGGGGAGACGGCTGTGTTGAAGACAGAGCCCTCCTGCTTCTTCTGCGGTATGC
AGGGTCGGCACCTCATCCATGTCAAGGGGCGAACGAGATCCAGCGCAAGCTTGTAGAAGT
GCTGGGTTTCGCCGCTGCCGATGCCGACACGGACGCTGTATATGGCCCCCGACAATGGGA
TCATCTTGGGGCGTATGGATGTGATGTTCACGCCGCCCTCGGCATCACCTTCGGGCAGGA
GCTCCTCGAGTACGCTGGCTGTAGTGCGGTAATGGGGCACCAATACATCTATCAGATGCA
CATCATTTAGTAGGAGTAGGTACACATGGCTGAAGTGTGTGATTGGATTAGCACCAATGA
CCCTTCTTTGCTTGGATGCCCTGTTTTATATACTCACTCCGTCTCGGTGTATAAGTCATC
TTAGGTTGTGCATCGTGACCAAGACAGAGAGAAAAATGAGAGAAATAAATGTTAATTTGT
TAATTAATATCATTACATGTAATGAATTGACCAATGCATGTTGTGTTAGTTAGTCTCAAG
TCATTAAAAACATACACGCTCCATGTTTCTTATTGGTTGATTTCTTTATTCATGACAAAA
AACAAAAAACTAGATGAAAGTTAATGCACGACGCCTAAGTATTTTGAGATTATTTGATTT
TCGTAGGATGACTTATACACCGAGACGCGGGGAGTAGTAGATATACTCTTTCCACTTGTA
CTGGATCGATACATATACAATAAGCAGCATTTAATGTCTCTGGTTTCAGCCCAACAATGA
GATCCTTCTTTGGAGTACTCCCTCCGTCTCGGTTTATAGGTCATCTTAGGTTATGCACCG
CAACCAAGACGGAGAGAAAAACAAGAGAAATTAATGTTAATTTGCTAATTAATATCATTG
CATGCAATGAATTGACCAATGTATGTCATGCTAGTTAGTCTTAAGTCATTAAAAACATAA
TTGCCCCACGTCTCTTATTGGTTGATTCCTTTATTCAAGTCAAAAAACAAAAAACGAGGT
GAAAGTTAATGCATCGTGCCTTAGTGTTTTGGGATTATTTGATTTTCGTAAGATGACTTA
TAAACCGAAACGGAGGGAGTAGTGAATATGCATCATTTATCTCTATCTCAGACGATGTGG
ATGTGAACTAAATGTATAATCATGATTTTGCGCATCGGAGATACACTGAGTTTTTTGTAC
GGCCTAGAAAGGATTTCTCCTTAATGCATTGTTTTAATAGATTTTCAATAGCAAGAAAAA
AATCATGCGGGTATTATAAAAAAGAGCTTTTTTATGGTATCCTATACTGTCATTGAGGAG
GCAGCAGTATATTTGTAATCTCACCGTTGATTTCATATGGGTAATATTGACCTTTTTTTT
AATTTCCACGGTAAAAGTGTGTTCCTTCATAGATGATTGATAGACTTCGTTCCATATCCC
CCGTCTTGCCGTTACGCTCATCGCTCCCCCAGGTCACTCCACGAAATAGGCATTGCCGCC
GGCCGCCGCTGTCGCCGAAACATCGGACCTTGTTTGCTCCGTCCATCTACCTCCCACGCT
CCATTGTCATCCTTCCAGTAGCCGTGTCTCATGGCCGTGAGCTTGCTGCCGCGTCACATG
GCTGTGACCTTGTTATTCCTACCAGTCAACGGTCACCATGGAATACAGTTTCTTAGAACT
TGATTAGGTGTTCAGTTAGACATGCTCCAGACGTTGACTCGAGACTTTTCTTAGAGGTAT
ACTGAACGAACCACATACATTTTGGCAATTGTCGAACTAAAGCACCATTTCAAAAACGTT
GTATGGAGGTAGACACGCAGATCAAACTTCATGTTACTGAATCTGATAAGACAAAAATCG
ATGCTTTCAGCATTCAATCGCGATCAGCTAAGGGGCCTAGCTGCGGGATTCGCTCTTTTC
CATGAGAATGGCGGAGGAAGAGGAGGGGGGCTCGCAGAGGGAGATGAGCCGGCCGTGCGG
CGGCAGCGGCCAGAACTATTGCGGCATATGCTAGATCATGATGCATTGGGAAGAACGAGT
GGCGTGTGTCAAGCCAGCGGACGGGTGGGCTGAAATATTAAGATGTACCAAAATTGCCCT
CAATCTCCGTATACTGCACCACTTTGCTCGGGTTGGACTACATATACTGCTGGATCTTTA
GAGCAGTACAAATCAATCTCTAGCGTTGGATTTCCCCGAATAGACGGACTCATTTTATTA
CGGGGTACCATAAATGATCTCATAAAAAAACAGTTTTGCTAAAGCAAATCTAGATGTGTC
ATTAGCATTACACATCTAAACCCAACATCATTGATCTTAACTTGAAGATTCGTGTGCATA
TTTTTTTTAAAAAAAATATATTTTTCTAGATTAGATTAGATTATATACTCCTAAGAGAAA
ATTCACGAGGTTTGGCTGGTCTGGGCTGGTTTCATTTCCTTGGATGGATGGATGACCCAA
AACTTCAAAAGCCTCAGCGCGGGTTCGTTCCCAAGCCTTCCCAAAGCATCTCAAATTTTC
GAAGGTTGGTTTATAATTCCTTCTTTTTAAATATAAGTCCTTTTAGAAATTTTAATAAAA
GACTACGTACAGAGCAAAATGAGTGAATCTATACTTTAATATATGTTTATATACATCCGT
GTGTAGTTTTCTAGTGAAAACTCTAAAAAAACTTATATTTAGGAACGGAGAGAGTAGGGT
ATTGCATGCATGTACCCCTTCGTATAAGCTCTTTTTTTACATGACTATATATGAATGTAT
ATAAACATGCTTTAGAGTGTATATTCACTCATTTTTCTCTACATGTAGTTTATAATTGAA
TCACTAAAACGACTTATATTTAGGAATGCAATGAGTACAATTACACCAAGGACATGTTCG
GCAACAGACCACTTCAGCGAAATCGCTCGCTCCACTCCACTCTACGCCGGAAGCGCTCTA
GCGAGCAAGGTGAGCGTTGGTGGAGCGTTCGGCTCGCTCCGCTCCAGCAATGCGTGGGCT
GCCATCCCATTGGAGGCAAATACACCCCGTTCGACTTTGATAGAGAGAGAGACGAGATAA
ATGAGAGCATATCGGTTTGGTCTCTCACTTGGCGGTGGCATTTACTGTAATTTCGAGCTG
ATCCGTGATTTGCCAAAACGAGGAGCCATTTGTAGGAAACAGGGCTATCGTTCGGCCCTG
GACAACCCATTAATCCCGGTTCTTCAAGAACCGGGACCAATGGAGGGTATTAGACCAATG
GGGGGTATTTCAACATGCATCGTGATCAAGACGGAGAGAAAAATGAGAGNNNNNNATGTT
AATTTGTTAATTAATATCATTGCATGTAATGAATTGATCAATGCATGTTGTGTTAGTTAG
TCTCAAGTCATTAAAAACATACACGTTCCATGTTTCTTATTGGTTAATTCCTTTATTCAT
GACAAAAAAGAAAAACTAGATGAAGTTAATGCATGACGCCTAAATGTTTTGGGATTATTT
AATTTCCGTAAGTTGACTTATACACCGAGACGAAGGGAGTAGTAGATATACTCCTTCCAC
TTTTACTGGAGCGATACATATACGATAAGCATTATTTAATGTCTCTGGTTTCAGCCCAAC
AATGAGATCCTTCTCTAGTACTCCCTCCGTCCAAGTTCATAGGGCGACTTTGAGAATCCA
AGAATTTCAAAAATGTTAGGCGTAATTCAGTTAAATGCCCTCGTTTATCTCAACAACCTC
GTACTCAGTTAAATGCCCCTCGGAGTACTACAACCCACCTCCTCTTCTTTTTTCAGTTCC
CACTGGGACATGGCCCGTGAGAGAAGGAAAGAGCCAATGCATGCAGGGTTAGCTGAAACG
ACAACACTAATGACGGAATTTATTTTCAAAACTGTTTCACTTTTTTAGCAAAAACTGCAC
GCTCTCGCCCAATCCTTCCCCGCCTAAATCGCCGAGCTTTCTAAAAGTCGTCCTACACAC
CTGGACGGAGGGAGTAGTGAATATGCATCATTTATCTCTATCTCAGACGATGTGGATGTG
AACTAAATGTATAATCATGATTTTGCGCATGGAAGATACACTGAGTTTTTTGTACGGCCC
AGAAAGGATTTCTCCTTAATGCATTGTTTTAATAGATTTTCAAGAGCAAGAAAAAAAATC
ATAAAACCAGATAGATTATACGATGGGTATCTATCTACTACTTCAAGCTAAGGATCATCG
TTCTGATAAACCAGAGGCTAAGCAGCCTCCTGTCGGCTGCGCCAAGGCCGATTGCCTCCC
CTTCAGGCCGAGTGGCTGGGTGCGACGTGGTTGAGCCAATCGTCGACTACCACGTGACCG
ACTGGCCACTAATCGGCCGCAGCAAAGCCGACAAGAAGAAATCGGCCACGACAAGGCCGA
CTGAAACGAGTCGGCTTCGGTGAGGCCTCGGCCGTGTTATTTTTGGAAAAAATGGAAAAG
ACGCAATATTTTTAAAATTAAGTAAAAAATAATATTAAAAGAATAGCTATCTACTACTCC
AAGCCAAGCATCACTGTTTTCAAAAAACCAGATAGATTATATGATGCGTATCTATCTACT
ACTTTAAGCTAAGGATCATCGTTATGATAAACCAGAGGCATGAAATGATGCATATCTATC
TACTACTCCAAGCTAAGGATCGTTGTTATGCTAAACCAAACATTAAATGATGCGTGTCTA
TCTATTACTAGTACTCCAAATCCAGGATCATTCTTCTGATAAACAATAGACATTAAATGA
TGCGTATGCGTATCTATCTATTACTCAAATCAAAAAATTTCTTATAAATCACGGACATTA
AATGATGTGTATCGGATGTATATACTGATGTACTAGTAAGGATACATGTCCTAATGTACA
TCTATCTATTTAAGGCACGACATCCAAGCGAAGAAGGATCATTGTGCTAGTCCAACCAGA
GACTTGAGCCATGTCTAATGTATATGCTTGCATGTGGTGCTTCTTCCTTGTCGTGCTAAA
TCCGGTGAGCCTCGCCCTTGATGCCACCAACAGCAGTGGTGCGGCTGGATTCAGCCTGCC
CCTGGTGCCCTATTACCGCACTACAGCCGGCGTACTCGAGGAGCTCCTGCCGGAAGGTGA
TGCCGAGGGCGGCGTGAACATCACGTCCATCCGCCCCAAGATGATCCCATATTCGGGGGG
CATCTACAGCGTCCGTGTCGGCATCGGCAGCGGCGGAACCCAACACTTCTACAAGCTCGC
GCTGGACCTCGTCCGCCCACTAACATGGATGCAGTGCAAGCCCTGCGTACCGGAGAAGAG
GCAGGACGGCTCCGTTTTCAACACCGCCGCCTCCCCTCACTACCACCACATCGCGTCCAC
AGACCCTCGCTGCATGGCTCCGTACACGCGCGCCGGCCAGGGTCGGTGCACCTTCGACGT
CAAGTTCCAGTACGGTGACTCAAGAGCGCGTGGCGTCCTTGGCAGCGACGACTTCGTCTT
CGACGGCAGCGGCCCCGGCAGCCCCATCAGCAGCGTCAACGGCCTTGTCTTCGGTTGTGC
GCACAACACGCATGATTTCTACAACCACGATCTCTGGGCCGGCGTCATGAGCCTCAACAG
GCACCCGACCTCCTTCATCCGGCAGCTCTCGGCCCGCGGCCTCGCCGCCCCGCGCTTCTC
CTATTGCCTCGCCAGCAGGCAGCACCGTGACCGCCGTGGCTTCCTTCGATTTGGAGCTGA
CATCCCGGACCAGTCGCATGCACGGAGCACGCCGCTGCTGCACGGGGACCTCGCCCAGGG
AGGAGGCATGTACTACGTCGGCGTCGTCGGCGTTAGCCTGGGCGGCCGAAGGCTCACAGC
GATCACGCCGGTGATGTTTGAACTCAACCGGCGTAGCCTCCGCGGCGGGTGCATCATCGA
CGTCGGGACGTCGCTCACCTTGATGGCCACGGCACCGTACCATGTCCTGGTGGCTGAGTT
GATTGCGCACATGAGGAGCCGCGGGGTGCAGCATGCCATTTTTTCCCCAGGGCAGAAGCA
CTGCTTCCGCGGGAAGTGGGAAAGTATCCACAGACACTTGCCGAGTGTGACGCTCCACTT
CCAGTTCCACCCGGAATCGGTCGCGCTCTTTATTAGGCCGGAGCTGTTGTTTGTGGCGAT
GACGGGCGAGCGCACTGACTATGTGTGCCTCGCCATCGTGCCCTACGCAGAGAGGACGAT
TATAGGCGCGGGGCAGATGCTGGACACGCGCTTCACGTTTGACCTCCAACAAAATCGCCT
CTTCTTTGCTCCGGAGCAGTGCCATCTAGACACTAGCGCAGTTAGCTAGCTAACAGCTAC
ATCCCCATATTATAGGTTCGCGCAAGACTTGCGTGAAAGTAATGAATAAATGTTTTTTCA
ATGGTACAGATGCAGACACTCGATAAAACAGAAAACCGATTAACAGGGAAGTCGGAGCAA
GGAGCTCCGGCCCACGCATAGTCTAATTGACAACACAACATACATAAGCACCATCGCCCC
GCTCAAAAAAAAAAAAAAAACCCCGCTCAAAAGCACCATCGAGCAAAAAGAAGAAGAGAA
GAGTTCACATTACAACCCCGAAGCACTAGTACAAAAACAGTCTTTTGTCCCGGTTCGTAA
GGAACTTTTGTCCCAATTTCTGAACCGGGACAAAAAGGTCGTTACTAATGCCTTTGGCCT
TTAGTCCCGGTTCTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGAG
CCCAGGCAGGAGGCCCTTTGGTCCCGGTTGGTG