Contig Data
morexGenes
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Map Locations of contig_54403 (6288 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54403

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68213 3 2560 bp MLOC_68213.2 Available Available LOC_Os11g06020.1, FRAME:-3, EVALUE:0.0, 13111.m00594 protein homeobox domain containing protein, expressed





CDS Structure of MLOC_68213






Contig Sequence (6288 bp)

>contig_54403 6288 assembly3_WGSMorex_rbca.fasta
TTCGGTACTCAGATGTAAGACTCTTATTATTCAGTANNNNNNNNNNNNNNNNNNNNNNNN
NNNTGGGATCACTGAGCACGATCATCGGCGACCTCGACTTGTAAGTCGGGGTCCCTACAT
GTGCCGAATAACCAAACCTCTCACCTATGCCTAACATCTAAATACGAAGGCCCCATCCAA
GTCACATACCGGGTCTGGGGCACAAACCGGTACGACGCACTCTCATGGGTTGTCACCGCC
ATCTTCGACCAATCCATCTTCACAACAGGTACTGATGCATCGACCTTGCCAAGCCTGCTG
TCGACATTGCCACGTCGCCAAACAGCATCACCGTCCTGTGCTCAACAATCTAGTCACATC
CGTCATCAAGATCCAGCTGCACATGCCGCCAATACTCATCGTCATGGACACGGTACATTC
AACGCCGCTTATCCTGCCAACCTCCAGACTGTCGTCGATGCTCGAGCTACATGGAGCCTA
CCACCCACAACATCTCTCCTCCGGACACTTGAGCCTCCCAATACGACGCCTCATGGAGGG
TACGACGTGCAGGACGCCGCCGCCACCCAATCCAAATGGATTTTAGACTTTTGTATGGGA
GAGGTTCGGAGGTGGATAGAAGGGGCCTCGGCTTTGCGTCCACGGAGGTTAACGGTGTCG
AGGGACATCGCCGATGGCAGGTCAAACCAGCCGACCAAAGTTTCCTCTGGCCCTCATCGT
ATACCACCCAATCTCCATCTGCCCCAGATCCGGCAGTGAGCCGTGTCCGATACCTGCACA
GATGAAGGTGCCATGGGGCTCCACCAACCAGGAAGGATGATTGAGAAGAACAACCATCGT
AGATGTATCCAGGCGCCGGATCCAACAATATGACGTGGCCAGCAATGAACACCACCACCC
CATGCCGGTCGATGGCGTCCAAGCGCCAGATCGAGAGAGATCCGATGTGAACCCGGCGAC
GCCCGCGACCACCCATCACGCAGCCACCACCATGTTGTGAGCACCCATCCAAGCCGTTGC
CGCCGCACCGCACACGCCGCTGACAGGAGTTGCCCCCACGCTACGACTTGAGACCCCACG
CTAGTCCGACGCCTCCTCATGATCTGGACATCCCGCTCCAGCCGTGATGCTCGAAGGGGG
GAGAAGCCCCGTCGTCGCCTGCGTGCCACGCTTCGCCCGACAGTGCTGCTGATGGCGGCG
AGAAGGGATGAGAGGCAGGCGGGGTTCGAGTGGCGGCGGCTAGGGTTTCCCCCGGGTTGC
CCACTGGGGCGACACGAGGAGGCTTGTTCCTTTTGTTGCCTCCGATCATCATCTTGTCTT
CTTCATGATCAAGAAGGTAATCACCTACATTATATTGTACTCCCTCCGTTCGGATATGGG
CGGCATCACTTACATACTTCAGCGCCGTAGCGTCTGGTATGAGCTTCATGGAGAAGCAAT
CGCTAGTCGGTACTCGAGTGAAGCTGTTTTATTATTTTGTTGCATCTGTTTGGAGCAGAT
CTTCCCTTTTTTTCCTGCAAGAAATGAACTGTTTTCTGTGGAAGAGAAAGAAAATCATAT
GAACATGGTGCAAAATGGAGTTCTGGTTGCTAAAGGTAACGAGATATGCCATCTCTTTTC
TTCTTTCATCCATGGAACCAAGTAGTGAAGAAAAGATAATAACTAGTGTATTACATTACA
GTATCCAAAAACAATACTCAAATCTCCAATAAACCAACTATACCGCATAAACTTGCAAGA
TCCCAATTCCGATGTTTTACATATATACCCCTTCACGTATATATCCCCCCCCCCCCCCCT
ATGGCCCTATAAAATCTTGTAACTGGAAATGTTTGGGTTTTAACTACCTTAGCTAACCTA
TATAGTGACTATACACAATGTCCCGTCTTTACATAATTACACCCCCAATGCCCTAGAGGT
TTAGGATTAATGGCAGCCTAACCATGCCTAGGCTTTTAACCTTTTATTTCTATACAAACC
CTAAATTGATTGATTAATCGATTTTTTTGTGATTCGTTTAATGGGTTGCGCTATGTAATA
TTGGTATTTCAGACTAGGCCACGAAGTCACGCATGAGCTGAGCCGCGAAAGACTTGGTGG
TCTGCATGTTCATGTCGTAGCCGGCGGCGCCGCTGCCTCCGCTGTCGGCGCCGTTGCTGC
TGCCGCCGCCCATTAGGAACGCCGTCTGATCGCCGGTACCGTGGGGTAGGCCGAGCGTGA
GCGAGACGCCGCCGTGCTGCCCGGCGAACGCGAACGACTGGTCGGTGCCGAACTGCCCGT
ACGGCCCCGGCGCGAACAGAGAGTAGCCGCCGCCGGCCCCGTCGTCGTCTTGTTGGTGCT
GGTGGTGGTCCCTAGCGCCCGCCGTGCCGCCGCTCTCCATGAACTTCATGAGCAGCTCCC
GGTGGCTCACCTCGTCGTGCTGCTGCCTTGCGGCTGCGGCCGCCGCCGCCGCGGCTGCCT
GCGCGTGGTGCAACGCGCCGAAGTCGAACGCCGCCGGCGGTTGGTGCTCGAGGTCGTCCG
CCCTTGCCTTCTTGAACCCGCGCCGCAACCCGCCATCCTCATCCTCGTCGTGGTAGAAAC
CCGCGTGAGCCTGGTGGTCTCCGGCGAGCCCGAGCATGGAAGCCTGGACGGCGCCACCGC
CCTCCGACGTCCCGGCTCCCGCCACCGCTCTGGACATGGACATGGACCTCGGAGTGCCGT
CGTCCACGCCGTCCGCGTGGCTGCTGCTCTTTCCTCCGGCGGGGCCGGACCCGGACGGCC
TGTCCTTGTCGTCGCCGCCGTCCTGCTGCTGCTGATGCTCCTTGGTCTCCTCCAGGTACA
TCTCCTCCACCATCGGCTTCCACAGCCTCACCCTCGCGTTGATGAACCAGTTCGACACCT
AATAAGTGTTGCACAAAAGAAAAATTCTCACGGATCAAAACAAGCCGCGGTAACAGTAAA
AATCAACAACACATGTTGCGACTGGATCAAAAAGAAGGATGGGCGAGATATTTTGTACCT
GGCTCCTGGTGAGGCCGGTCTGCTTGGCGAGCATGATCTTGTCCGAATCCTTTGGGTATC
TGCATGATGAGAGGGCGATCCGATCAACCAATGGGAGTGCGACACGAGGGCGCCGAGTAC
GTACGTACCCGCCGGTTTTGGGCGTGCACGTACGTACGAAGGGAGGTGCCATGCGTGGTG
CCATGCGTGCATGCTTGCATGAAAAATGCATCATGATGCATGATGCATTGTGTGTGTCGT
ATTCCGTACTACCACGACTCTAACTCTCTCATGCAAGTACGGCATCATCATATCTTTTCA
TTTCTCACTCTCTCTCTTTACCACGTCAGTGACAAATGCATGATTAGTTCAATTATCGAT
GGAGTACACCTAGTTAGCTCGGTTGCACGCACGTTAATTACGCATGATGCAAAGCCTTAT
AATCCCAAAACAATTCAAGCAATGTAATGCATGCATGGCAACCCAAAAATGGCGGTAAGG
TTATAATACTAGTACTCCTACGTACGTAGTACGAGGGCATGGTGTAGTACAACAACTTAC
GGGTGGAGGAAGTGCTCGAAGAGCCATGCACGAAGGATGGAGACGGAGCGCTCGGGGAGT
CCTCGCTGAGGGCGCCACGCGCTGCTCTGCATCATGCCCAGCTGCTGCAGCGCGCGCTGC
TGCCGGAGCTGGTGGTCGATGTACCGGAGCCGGGACCCGACCCCGCGCCCGCCGCCGAGA
CCGCCGCCGAGCCCGTCGGCGTCGCAGTCCTCACCCAGGGCGCGGCTGGCGGCGCGCACC
TGCGACGCGATGGCGTCGCGGAGGCAGCGGAACTGCCGCGAGATGGTGCGCAGCGCCAGC
GCCGTGTACGTCCGCGCCGACCCGGCGCCGGCCACCGCCTCGAACGACGACGACACCGAC
GCCATCTGCTGGTGGTACTGCCGGTAACGCTGCTCCACCTGATCATGACATGCCATCGCG
CAGCCACATTAGATCCCAGTGCAGGGATTAGCTCGTGAATTAATTAGTTATCAGTGGATT
GATTACTGGTGTTAACCACCGCAACCACCCTCCACTTTGGCGTTGTGTTTATCATAAACG
CGATTAATTGTCTTCTCAGATAGAATAGATGACAAAGAATCAGGTGAATGCTTGTAATTA
GCAAAAGCATGATTCACTGCATTTCGTATTTATAAATGGAGAAAACACAAATTAAGGCTC
CCTAAAAAAATTCTAGAAGAAGAAAAACTCAAAGCATCAGGGAAAGCCAGGCTGCCAAAC
TGGCTTTGCTGGCTTGTGAAGAAGCTAGCACCAGCTCGGACAAGCAGGGCCTATCTACTA
CCTTCTGTACTGATTGCATATACTTGCAGTATTATTTAAGCTATATATTGAGAGAATACA
AAAAGAGACGCATATTTGATCAGGCAACAAAGTTAAAGCTGGCTTGTACTGGCCTCAACA
AACAACAACATGAAAAAATTGTAATTTATAGGTGCATGAGTGCTTTTTCCTATCTCAAAT
TATTTGTTAATGATATCACCAAGATATATACGTAGCTACTAGCTAGCTAGCTTGTTGCTT
TCTTCTCTAGAAGAAATATAGAAGGGTATAGCCACTTGTTGGTTTTCAAGAGTAGACTTG
TCACTTTTTTAATCCCTATCACACATAATTTCCGTTTACTTAATCACCACCACAGCTGAT
TTTCTAAATTAATAAGTGTTATAATACTAATAGTTGGCCGTTTCGCAAAAAAAAAACTAA
TAGTTGCCTGTTAATTAGCTCTAGCTGTAATTCTGCTTTCTAAAAGACAACACTGGTCAG
TGTTTATCAATAAATAAAAAATCGAAGAGAATATATAGTTGGTGCAAGCTGACAAAACAG
GTGTGATAATTAAGAAGAAAAGGAAAAAGGGAGGAGGAATATCCAGCAAATCAAAGGCCT
GCTTGGCTACCCCAACAACTGTGTGTCACTCACCTCAGAAAAAGAAGCAACAAAACAAAC
ATAGCTGAAAAGCAAATGACCCATATACTTTCGATAACACTTCCTAAACTTGTAGATGCA
AGGACATATCAGAAACATCTTCAATCTAACACTGCCATATTCAGAGATCAATGTTGAAAA
AATAACAATTCCTAGCTAAGCGGTAATTGGAAATATTGTCTGGAAAAAATGGAGATATTA
ATTCTCTACGAAATCATTGTAAAAATACATTTCTTAACATTAAAAGTTAGAATCAAAAGT
ACTAGTGATAATTCGTTAAAGTGGACTTAGGTTAACTACTGACCTCGTCAAGCATGTTAA
CCAGCTTGCCTTTCTTCATCTGCAGCTCCTGCCGCTCCGCCGTCGACATCTCGGGCGCGG
GCGCGCCTTCCTTGGCCCCGCTGGCGCCGTCCTCCCCACCGCCGCCGGAAAGGCCTTCCG
AATCCTCCTTCTTCTTGACCAAGGCGGAGCTCTTCGCCTTGGCGTCCACGTCGTCCACGC
CCTTGCTCACGCTCACCACCTCGTCGAGCAGCTCCTGCGCCGCCCTGAGGTACTTGGAGT
TCATCACCACCTGCCCCTGCGACGCCGCGGTCGTCGCCCCAAGCTGGTACCTCCCTTCGT
CGCCGGCGATGGAGGCCACCGTGACCGGCGGCGTCTCGCGGGACGACAGGCTGAGCACGG
CGCTCACGCCATGCGCCTGCTGCGTCGGCGGCGACATGACGTCGGCGATGCCGGTTGTGG
TCGGGGTCCACAGGTTGTAGCCCGAGGGGGGCGCTTGAAGAGGGATGCCGACGAAGTGCT
GCCCTGGCGGCGGCGGCGGCGACGCCTGGTGGCCGCCGAAGGAGGCAGGGGTCATGGAGC
TCACCGACGAGTTGAGGAGCATCATGTTGGCCCCGGAGGGCGCGGCGTCCCCGTAGCCAC
CGGTGCCGTAGCTCGGGTTCATGAGGTACAGTGTTTGCAGGCCGTCGCTGCCGGCCTGGT
GGATGTCCGTGCCGGTGCCGCCGTGGTAGTACGCTGCCATCGTGATCGCCGGCACCTATG
TAGACCGATCGACGGCAATATCTCTTGGCTATGTACGTATATATGTGCACTTGTACACTA
ACTGAAGTTCTCCTTGAGATAAATCCCTTTATCTCTCTCTTCAATTATATATCTCCTTCC
GTGGAGCTTGCTGTGGCTTTGACCTGTCAAAAACAAGTGCCAAGAAGTTAAGGACATTCG
TATATATAACAAGAAGGGGAAAAGATCACCGAGCAGTAATTTCTCGGATGATTTGCCATG
TAAAATAAATCGGATCCATGAGCCATGCAGATAGAGAAAAGAGAGACG