morexGenes - Barley RNA-seq Database

Contig contig_54338
Source Contig contig_54338
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54338 (8600 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_54338

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68179	1	1651 bp	None	Available	Available	None
MLOC_68180	4	3862 bp	MLOC_68180.4	Available	Available	LOC_Os08g29110.1, FRAME:-2, EVALUE:1e-76, 13108.m03007 protein thioredoxin, putative, expressed
CDS Structure of MLOC_68179

CDS Structure of MLOC_68180

Contig Sequence (8600 bp)

>contig_54338 8600 assembly3_WGSMorex_rbca.fasta
ACTAGTGGTCTACATACGAAACAAAATGATTGAATGTATGCTTTAAAGTATGTCTATATA
CATCCGTATGTAGTCTAATAGTAAAACCTCTAAAAAGACTTATATTTAGGAACGGAGGGA
GTATCACTTATGATGTCTAATATATTGAGTTTGTGCTGAATACATGTATATGTTGGGGTA
ATCCAAAGGTGTTTGGATAGGTGTTGGGTTGTTTTCCCACACCATATCCCGAGTTGTGAT
CAACAAGTTGGTATTTGTGATGCGTTTTCGTGTACGCATAGGTGCCAGCATGAGCGTGAA
ACCAAATGCTAGCATATATATAAACATATACGTGTCATATATATAAACATATACTCCCTC
TGTCCCGGAATTCTTGTCGCATTGGCGTTTTTCACAAAACCCCTCCCCAAACCGCCGACA
CGACCCGCACTCCTCATCGTCTCCAATCGACAAGCCGCCGCTCAGATACACAAGCACAGA
CGTTGGATCTCCCCTGTTCAGCTACCCCGGCTGCTCCCCTGCTCTCCCGCGCGTCCTCCT
TCGCCGATGCATCCGCCGCCTCCGCAGCTCCTTCCTGCCTCGCGTAGCTCCCCTACCCCC
TTGCCTGCCTCCTGAATCTCCCCTCTTTCACCCCAAAAAACGTTTCTTCTTCCTCCCGCT
ACGTCTCTTGTTCGCGTGCGGCGATGACATGTCCTCCTTGTCGCTCCCTCCACCGTAGGA
GGCTCGGGGCAGACAGAAGTGGCTGAGCTTTCTCGCCCCAGCAAAAGAGGTATGCCACCA
TGGATTTGGTCGTCGAACAACTGCAGGTACTCCAAGTAGGTAAGGTTCTGAAACTCCATC
GGAATTGCGCCGGTCAGGGTGTTGATGAACTCCTGTCAGCTTGTTCTCTGACAGGTCGAT
CTCCACATTGCTCTGCAGGCTCCCGAGCTCCTTCCAGATGGCGCCGTTCAGCTAGTTTCG
GTAAATGTAGAGCTTTATGAGCATGGGCAGCCGGAATCACATTTCTCTTGGTGTCTGCTC
TTTGTCATATTGAACCTGAATCGCATTTCTGCTGGTATTGTGTTCTTTGTCATGCTGAAC
CTGAATCACATTTTTCTTGGAGTCGCATTCCTATTGAACCTGAATCGCATTTCTGCTGGT
ATTGTGTTCTTTGTCATGCTGAACCTGAATCACATTTCTCTTGGAGTCGCATTCCTTGTC
ATACTGAACCTGAATTTGAGTTTGAAAGTGAACTCTGCGATGCATTTTCAGACCTGAGCC
ATTAGGAATCGGCGCTGCTGCACGACATGGTGTAGGTAGGCAACTATAGAAGGGAATTTT
ATGTTCAGTCTTTGGTAAAGATAATTCAGTTATAAGATAATTTAGGAGTCATGAAAATTC
AGTTACTGTCAACTGATTTGACATTATAATTTACTGTGAACTGAACATTAATACTTTTAC
AGTAAATTAGCAGTACACAAACACTTTTACAGTTCTGAACACTTTTCACAAGATGAAGCT
CTTGATCTTACAGTAAATAGTCAAGTTAGGACTACACTTTTAAAGTTCAAGATACTCCTG
TAAACTAAACCTCAACTTGCAGAGTTGTTGTTTTCAGTTAACTGAAATTACACCAAAGAA
TTTCAGTTGCTTCCCTAAGTTAAGTCATGTTGTATTGCACCTCATTTATACTGTCAAACT
GCATTGCTTATACTGTCAAAAAAGGTTCAGGCTCAATGCTGCATTGCTGAAAAACTGAAA
TTTTAACTGAATTTTAACTTCTTCCTGAGGAACACGAGCTCTGCGGCAGCACAAGGAGCA
GGGCAGAGGAGCAGCAATAATGTCATGTGCACAGGAAGAGGAGCAGCAGCAACACGGGCT
GATCTCCACCGGCGACATGGGGGCTGCTACTGGAGCTCTGCTGCTGCTGATCAACACGAT
CATGGCAAAGGGAGCTGCAGATCAATTTCACTGTGTATCAGCTACAGGATCAGAGGCGGA
GTACCAGAGGCAGAGGCGGGGAACGGAGGGCATCGGCCTCGCCAACCAGCAGCGGCACGG
CAGCAGAAGTGTCGCCCACCACCGCCAGTCCGCCATCACAACCAGCCGGCGGGCCGAAGC
GGAACAACGTGACGGCTGAAGTGGACCAGCGCGGCGCGGGGGGTGGCGGAGGACCTGCTC
GTCGGTGGGAGGCAGAGGTCCTCGTGGGTGGACAGCGGAGGTCCTGTTCATGGGCGGGCT
CGTCGGCGGTTCAGAACCTTCTCCTGGAGACGGCTGGCCGTGGCAACCCGGGCGAAGGTA
GGAGGAGGAAGGAAGCAGACAGGGACTTTATTTCCAGAGATTCGAGACAAGAAGGACTAA
AATGCAAAACAATCAATGTACTACGTCAGCGACATTAATTTCGGGACGGAGGGTGTATAT
GCTAGCCACATATGTGACGATTCAACAGCCATGATCTGTTTAGTGTTGGTATGAGGATTT
AATGGCTGTGATATGTTTACAGTTTATGAAGATCTGATGACCATGACTGTTCATGTATTT
ATGAAATTTAATGGTGACTATGATATACTACCTCTGTCCCATAATGTAGGACGTTTTTTC
ACATCAGTGCAGTGTCAAAAAACATTTTACATTAAGGAACAGAGGGAGTAGTTAGGTACA
ACTATAAATATCAAATGGTTGTTGTAAATGATTATGAAGGTCCACCGAACCAACGGCTGG
ATGTCATGGTGGGCTCGCTAACCAATCATTTCGACCACTCCAGCGGTGCAAAAGTTGTGA
TTATCTTTTTCTTTCATAGTGGGTATGCTTCTAGTGGTTGGCCTGGATAATTGGGCTTAT
TGTTCTTCTTCACTCCCTTCTCAAGTGGTGATGTGTGTGTTTGTACTGCCATTGTAACTT
ATTGTATCATGATTCTTTCATTTAACCGAAATATGCTATTAGCGTGCTATAACGTGCTAC
TAGCGAGACAATGTACATCGATCAATTTAACGAGACAATTCTCCACACGCTATGGCACGC
TATTAGCGGCGGTACAGCGCGCTATTTTTTTCAGTGGTTGTGATCTATTTAGGTATGTTA
TGAAAATCTAATAGTTATGATGTTTTTTGGAACAATATGTATATCTAACATCATGATAGA
GAGTGGGCAGCGTAGCCTCTCAAGTTCTTTGCAACCTACACCATACAGTTCATTCAGCCA
TTGGGAAAAGGTTTCGGAAATATGGGCAAGTGAAATAATAAAAAGAACCAAAGGGTCAAA
ACCATACCGGTGCTTGGCCATAGATCTTGAGAAGATTTTGTTCATGAAGGTCTCAACAAC
TTTGTGGACTTCGGAAGATTTATCCTTCTGAACTGAAGGATATAGACATCATTGGAATTC
ACATGAACTATGCATGGATTTATATTACCATCAAAGAAGATGTAGATGGCTTCAATAAAG
GTAAAGCCTCATTTGGATCACTCATTTTAGGGACATGCTTAAACAAGAAATCAGAAAGAT
CTTTTCGCCCCTTTTAACCAGTTTCCTGATCACCCAAAGCTACTGTAGTATATGGAACCA
TCATAATTTCATCGCCCAAGACAGAGATTCTTTAATTTGTATGGCAAGTATCCGATCAGT
CTTGCTTTGAAAGCCATACATAGTATAATGTTGTCATCGATACAAATAACAGTAAAAAGA
TGAGCCAAATTTACTTTGGTCTCATGTCAGTCATATGCCATCTCAGAGGCAATGAAAAGG
CTATTGAATAAATGAATACATAACAAACTAGAGTAGTTTACTGTTTCATTACTATTCAAA
TTCAAGAAAGGGAAAAGGGATTTAAGTTTATAGCTTGTATATTTCAGTACGCATTAGTCA
CTGCTCGGTTAATTTGAAAACCATCTCAAGTCTGAACCATATCTTTTTCATATGTGCAAA
TGCAAGGTATTTAAATACGGTAGGGAATAAACTGTTTTAGAGGAAAATGAGAGTGAGATA
TACCATTTTCCAAAGTTCATCATTTTTGGAGTGGGAAGATCCAATCATAAGGAGCTGGAA
ACATAGTGTTCGTCAGTTAGTACAGTTCTCAATAACTTAGGTTTCAGTGTTAAAAATTTA
ACATAACATACGAGTAGGTTCCACTCAATTTCATCTAGCCATGATTGGTAGTACAAATTA
CGCACAAATGCAAGATACCTAAATACATTGTAGGGGATGAACTGCTTCAGAAATTGAATA
TGTCACGAGTAATGCTATGAAAAGGACAGCGAGATATACTGCTTTCCAGAGTTCATCATT
TTTGGAGTGGAAAGAACTGTCATGCATTGTCACCTAAAGAATAAATAGGATTCATTTTCT
CCACAAAGAATTCAGGCCAAGCGAAGGAATCTAAGAACTGATGATGTAGATGGTGGGCCA
TTCATAAGAAATTGACTTGACATGGCCATTGCTTACTGTGTCCGCTGTAAATTCACAGCC
TAATTAAGTACTCCCTCCGTAGAGAAATATAAGAGCGTTTGATCACTAAAGTAGTAATCT
AAACGCTCTTATGTTTGTTTACAGAGGTAGTACTATGCAATGCAGTTTTAGGCTTTCAGT
ATGATAGGTAACTGAGAAGACATTTATACGAGTTAAAAGTAAGAATTACCAAATAATATC
AATAAACGTTACGGAAGTATGTTCACTGACAGATGAAAATATCACAGATGAAAACAGATG
CTAATGAAAACTTGGACTGTCGACACGTTAAAAAGGCTTACATTGTCGACGCCCCGGATC
CTAACTTTTTGTCAAATGGTCAACAGGGGCAAGTGGTGGCGGCGATTGCATCCAAGAAGG
CGCGAAGGACAACGGTGATGGCGCCATGGACGGCCGTCTCGGCAGCCCATGCTGCTCCTG
TACCAAGGACGATATCCTCGACGGCCTAGACATCGTCGTCTAGTGCGGGAGGCGGTGGCT
CACGGTCCTCCTGTTGCAACAACTACAAGGAGAAGAGAGGCAGGATCACAGCAGCGGCAT
TAGTGGTGGCTGATGCTCCATCAGCGGAGGCCGCCAAGGAGATGTGGCGGCGGTGTGAGG
TTGTGGGAGAGGGGCGTGAGTGTGGCGGCAGCAGGAACCACCAGTAAGAGCATCCAAAGT
GAAGGAAATACGCAGTAAGATCAAAGACAAAATCAAGTGCATACAAAACTAACAAAGATT
TCAATGCCAATGCACACAAGAATGGTGCAATAGAGAACCAATTCGTTAGTCTCAGGTTCG
AACAATGATGCTACATTCTGCTCATGCAGATCTTGCACACGGGAACCTAGGACGGAGCAA
CACAAAGCTCCAATCAACCACGCGGACTGCGCCTAAATAAACGCTAAGAACTAGTACAAG
ACTCGGCTAGAAAGCGTAGCTACTAGAGACATTAAACTGAACTCACAGCTCGTTATCGAT
GATGTTCCTGACCATTTCGATCGGAATTAGCCCCTCGGTCCTAATGGCGTCCTTGCCCTG
GTCCGGGCTGAAGAAATAGAGCGTGGGCAGCCCCCTGACCTGCATATCCCTCGCGAACTC
GTACTCCTCGTCCGTGTCCACCTTGACGAACAGCGCGGTGTCCTCGTACTCGACCGCGAG
CGTCTCGACGTCCTGCGCCATGAGCACGCACGGCCCGCACCAGGTGGCGTAGAAGTCCAC
GACGAGCGGCACCCTCCGCTGCCCCCTGACGAGCTCCTCCAGCTCCCTGGCCGACACCTT
CCTCACGAGGTAGTCCGGCGCGATGTACTTGCCGGAGCCCGGGACGTAGGCCTCCGCGGC
GTTCCGTCGAACGGTTGGCCTGCGGTCGCGGTGGCTCCTGGCGCTGAGGCTGCGGGGGGC
GGCGCCCTTTGAAGAAGCAGGGGGGGATGGGATGGAGACGGTGCGGGTGGTCGCGGCTGC
CGGGTGGTGGAAGCCTTGCGGGGGGAGGGAGCGGCCGGCGGATGCCAGCGGGAAGGAGGC
CATGGCCGGAGAGGTTTGCGGGACGAGCAAAATCCTATCCTCGAGGTGAACTGAAGGGGT
TTGGGTTGCGTGCGCACTGAAGTGAAGAGGACTCTTTTCACTTTTTCCAACCCAATCCAA
ATCGGGGGCGCACATGGGCCGGCCCAACCCCTCAAGAAAAAACCTGAGCTCGGTCGCTGG
ACTCGATCGCGCTCTCGTATGAGGTTGTTATTTAGCGTGTTTTTAGTCATCGTCACTTGT
CATGTTCTAAGCGTTTTATTTTGATTCTATTAATATTATTTTTCGCACGCATTTTCAGCT
TTTCAGATTATTATTTTTATGTTTGGGGTTTTCAACGGTCTTTCTTAACATTTTGATAAA
AAAAATGAAAAAATGTGTGAAAAAACTTGTTTTTAGGTTTTTTTTTTTTTGCGAAAGATA
CGATTTTGCTTCCGCGAGAGGCGTGGTTGTGCTCTCGAGAGGCACGGCGCGCCTCTCAGA
AATAAAAACGTGCTTTGTATTGTCTTTTTTTTCGAGATGCACGGTTTTACTTTCTTGAGA
GACACGGTTTTGCGTTCGTGAAAGGAACGACGGTGCCTCACGAAAACGGAAAAAACATGT
TTTTTGTTTGTTTTTTCTTGAGAGACACGGTTTTGCTTTCTTAAAAGGCACGATTTTGCG
TTCGCGAGAGGCACGACCGTGCCTCTTGGAAACGTAAAAAAACGTGTTTTTTGTTTTATT
TTTTATGAGAGGCATGACTTTGCTTTTGCGAGAGACACAGTTTTTTCTTAAAGAGGCACG
GTTTTGCATTCGCGAGAGGCACGGCCATGACTCTCTTGAAAAAGAAAAAAAATATGTTTT
TTGTTTTATTTTTTACGAAAGACATGATTTTGCTTTCTTGAGAGGTGCAACTTTGTGTTC
GCGAGCCGTGCCTTTCAAAAATGCAAAAAAAATGTGTTTTTGTTTCTTTTTGCAACAGGC
ACGGTTTTGCTTTCGCGAGAGGCACAACCGTACCTCTCGAAAACGAAAAAAAAAATTATT
TAAAAAAAATTTGTGAGAGGCATGGTTTTACTTTCATGAAAGGCACGGTTTTGGCTCCAC
GAGAGGCACGGCCGTGCCTCTCAAAAACAAAAAAAACATATTTTTTTTGTTCTTTTTTCT
ATCGCGGGAGGCATGGCTTTTCCGTCTGGTTTTTTGTCTATTTTTTCATGTAAAAATTCA
TCAAAAGTTATTAACATAGGATCTAGTTTTAAAGATCTTGACGAGAGGAACCTAACGGTA
AAAACGATTCGAGATTTAAACCCACGGTTTAAGAGATGAAACGTTTTAAAAATACAAATC
TATAAAGAAAGGAAAAACTTCTTACGTTGTAACAAGTAACATGCATACAATATGCCATTT
ATCCCAACTAGAGAAGATGAAAGTGATCTTTAAAAAGGTATTTCTTAATTGATGATTTTA
CAGTTTACCTAGAACGGGCGTTCATTTTATTTTGGATTTTGTTCGTTTGGGTAATGAAAA
CGGACGGCCTAGTCTGATTTTGTCTGTTCTCCTCACAGGGCACCCAACCGGACAACCGCA
TTGCATTTTGTGTGACTCATAATATAAAAAAGGCCAGCCATTTAAAAATATAAAAACAAA
CTTAATTTAACAGTGCTAAATATTTAAACCGTTCAAACAAGTCCCAACCACACATTAAAA
TTACCTTAAAACTTCAAAAAACATTAAAAAAAAACTTGATGCCGCCATTATGGTTGTCCT
TGGTGCCGTCGCCATCTTCAGGCGTCGATGTCCTCCTCATCGTCATCCCTACTGAGGTCG
ATGTACGGCGGTGACTGCCAGAGGTGGGCAGGTGACGCAGCAAACGGCCCCTACGACGGT
TGCATGACCGGAGGGCCCTGCACAACCTCTTCCTGTGGCGGGGACGGCGACCATGGCTCG
GCTCCCACCCCACGAGGGCGACACGAAGATGTACTCTGGCGTGCACAACACCATGTCCGT
CCACGACCATATCTGCCCCATCATTGACGCAAAATGCAGCTCGACAACGACCTCTTACAT
CTTCGAGGGGATGGCAACATCGCCCGTGACGGAGAGGGCCATCATCACCTCGAGCCCGTG
TCACTGGGCCTCGTCGTGGTCCTGGACTGACTCCTCAAGAACCCGCCGCATGAGTTTCTC
CTCCTCCTCGGCAGACATGGGAAGTGCTGGAGGTGGGGGACGACGAGGGGGAAGGCATCG
GGGTGAGCACGTGGATCCGCACACGACCACGTGGTTGGCTTGCACGTGGCACGCTCGGCG
AAGTATGACTACCGCCACAGGTCGTGCTTGTCGCAGAACCAAGTGTCCCACAATAGGGAA
TCAATGGCATACCTAGCGTCGTCGACGAGGCCGGGAGGCAGGCGGGCGCGGCAACGCTGG
ATCTCCTCGCGGCGAGCTCGGTCTCCGACGGGGACCGGGGGGGTGGGCACGTGGCCCGAC
AACAAATGTCAGTAGTTCGGGAGGTGGACTTCGTTCCATGACAATGGTGTGTGTCGTGGG
AATAAACCTGACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAACCCTACGTC
TCAGGTGCTCAGGAGCTCTT