morexGenes - Barley RNA-seq Database

Contig contig_54309

Source Contig contig_54309

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_54309 (2295 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_54309

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68166	1	547 bp	MLOC_68166.1	Available	Available	LOC_Os10g26560.1, FRAME:+1, EVALUE:3e-60, 13110.m02264 protein expressed protein

CDS Structure of MLOC_68166

Contig Sequence (2295 bp)

>contig_54309 2295 assembly3_WGSMorex_rbca.fasta
GATAAAACCTATGAGTTACCTAAAAGTGAATCTCCCAATTCTTCAGAAGAAAGAGAGAAC
AAAAAGCAACCAGATCTTTCACCCATTTTGCCAACTGAAGATGAAACGGCTCAAATTTCT
GTTCCAAGCTTTGGGAAAGGTCAGAATATCAACTTTGGAACTTTCAATACACATTGATAC
TTTATACAAGCAAAACAATAGTTTTCTAGAGTATGTTTTGTCCCTTTCAGATTTATTGCC
ACATTTGTAGAACCGAAGGTGACAGTGTTAGTTTACAGAGTACTAGCCATTTTGTTCTGC
ACGAGGACAGTACTCATGTACTAGAACACATTCTTCTCTATGTATTTACATATATAAATC
GATTGTTTCTCTATGCGTCCATTACCAGTTAAACACTATTGGAAGAGCTTCTGCCCGTTT
CCTGAAAAAATATTTAAACATTGGGGGTCAGAGCATCCAATAGCAAATTAGGCGTTAATT
GTGCGTTTCACCACCACCTTGTGCTTTTCTAACGAAAGTGTACGCTTAAGCGCAATCATG
CGCTATGCGTTTTGCTATCACACAGAGCCTAGGCATGTCTTTTTTTAACCATGTCCAATA
GTCCTACTGTTGCATCAGCTCTGTTTCCACAAAATTTTCATAGCAATCATTGATGAAGCA
CTATCAGTGCCAGACTCAGTCCTGCTGTGGCTTTAAGGTTAAGGCTCTCCAAATGTACTG
CCATGATTGCTGATGTGCTAAGACGGTACACTCGCTCTTAACTATTGTATGAAGTCCTTG
CTCATGAGAAGCCATTCAAATGGAATAGAAGCAACATGCGGCATATTCTGTCTTGTGCAT
GCATGCTACTTCAAATGTGTTTCATTAGTGTTTTTTGCTTGCTTTAAGTTTAGTATTTTG
ACCACTTTAGTTCTGGAAAATTAGTAACGTGAGCCAATCTTTCCCCTCATGCCGTTGGAG
ATGTATAAATTACACTATGTTATATATATCCAAAAATTGTTTACCTGTGATGTGTTGCTT
ATTTATAATTGGTTCTCTGTGTGCAGGATATAAATCTCGCAAATGGCTTTCAGATGTAGA
TAGCCCTGATAAATCTCCTCCATTAAAATTGGATAGGAAATCACGTGATGGTAAAAGAGC
CAAACGGCGCTTACCTTCGCCTGTTCCTTTTGCCACTTCTGGTAAAGTTGATTACCTTTT
TGCGTTCATTTAACGGGTTGCAGTTCATAACTAATATGTCATTACTTATTCATTCAGGAA
CAGAAGAAACTATAATGTCAGAGAAAGAACCAGTGCAATGTCCAGATGACTATCTAACCA
GGTTTGGTTTAGGCTGTATAAAGAAATACATATCTGATATTGTTGGTTGGTCGAATTTCA
TTTCTTGATTGTAACCAGGGCTTTTGATGAGTTACTGCTGGTGCTGGGAAGGTTTCAAAC
CAAGATCAAGTCTGAAACAAGAAATAGAAGTTCTGAGATACTGTCAGCTACTGGAGAGAT
AATTCGCCAGCACCTCGAGGGAGTTGAGGTGCAGATGCAGGATGATGTGTAAGATCTTTG
CTGGTGTTACCGAAAAAACTACATCTTATCTGCATATGCACACCTAATTGTATATCTAGG
CTTGTTATATAAGTATCACATACTCCCTCCATCCCAAAATAAGTGTCTTAAGCTTNNNNN
NNNTTTGTACTAGCTCTAGTACAAAGTTAAGACAGTTATTTTGGGACGGAGGGAGTATAT
CAGAGGTGCAGCTTTTTTTGATGCATTCAACTGTACTTTCAGGGATAAGCTGGTCAATGC
AGGAAAATCTAAAAGGAAGCGACTAAACTCAACATTTGAAGGTACAGTCTATGTTGTGTC
ACTGCAGAAATTAATATTGTGAATCATGAGTTTTATGACAATGAGACCCATTTGCCAGAA
ACTGTTCAGAAAGCAGTATCTATATAGACGTGATGTACTGGTGTTTTGATCCATTGTTCC
ACTCATACTTCACCTATTCGGATTATTCAGATCGAGCAATTTACTACTTCAATGAGTAGC
AGAGCAGTCATATAAAGTTAGTCATGATCGGGTTCCTGTATGTTATGTAGGCCGGGCATA
TCCTAAACTTCAAGAAAACACAATAACATGAATGTTTGCATATGAAAGACCCCCCCCCCC
CCCCCCCCCCCCCCACACCCCCCCCCACCACACAAAACCCCCCAACACAACACACCACAC
CACAACCAAACAACCCCCACACACACCCACCACACAACACCCCCCCCACCCCACCCCACA
CCACCACACACACCC