Map Locations of contig_54299 (9737 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_54299

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68162 2 976 bp AK249921.1 Available Available None





CDS Structure of MLOC_68162






Contig Sequence (9737 bp)

>contig_54299 9737 assembly3_WGSMorex_rbca.fasta
TAGCTCAAGATCAGTATGTCATTAGTCTNNTCAATGCCATGCTAGTTATTATTTTATGGA
TTAATCTACTCGGAAAATTGCCTATTTACTCAACAGGTACAACAAGACATATTTATAAAT
ATAGAACATTTGTGTTCAGGCTGAAAATATAAGGCTTCTTACAGGCCTCATGAAGTGGCG
GAAACATAACGTAACCAAGGAAGCTAACACCATTGAAATATCACATACCGGCATCCATAT
GCAGCTTATAAGAACAATGGCAGCAAAGGCTGATGTGCATAAGCATGGTAAGAAATACGG
GAACCTGACAAGTTTCATCGAACGTAAGTATCTGCAGAACAATTATCTACGATAATATAA
TTTTAGCAAAACAAAATGGTACCTTCCAAAGAATGAGTCAGGCAAAAAGATATCTGGATA
TTTTTCTGCAGGCTGCCAAGAAAACAACCAGGTTAGAGGTTAGTATACTAACAGGATGAC
ACTTACGTATAGCATGAAATTATTTTTTTCCCTTTCATACCAGTGCAAGGTAGCCTCCAA
GAGCAGGCCCAATGATGAGACCTATTGCCCATGATGTGCTAACCTAAATTACAACAAAGT
GAAGTCAAAACCAAAAGCACTGAAAGAAAATACTCCCTCGGTAAACTAATAGAAGACGTT
TTAGATCGCTATATAAAACAACGGAGGTAGTATGTTACAAGTGCATGGCTACACATGACT
ATCTTACAAGTGATAATGCTAGAGCTTCATGTTCAGGTCGGCAAACTTCAATGGAATAAG
CCTGCAAATTTTAGGCACAAATTCATAAGATATACACAATCTGACATAAAAAAGGGTTTG
AAATTCGCCATACCCTTATTGGTCCGAGTAAGCCATTTAAAGCACCTAGGAGAAACCTTG
TAGCTATCGCCATCCAATAGGTGACACTAAGCCCAAACAAAGTATTAAATACTACCCTGT
GATATTAACAAGAATCAAGTTAGGGACTCTACTAATGAAATAGGAGTAGAAATAGAGGAG
TAAACAAGAGGCTAAATGTCACAAACACGGAGAAAACGCTAAACAGAATAACTGGCTTCC
TCCCAATACGGTCTGCTGCTATTCCCCAAATGGTTGAAGTCAAAAATCTTCCGAACATAA
AAGAAGCACCTGAAATTTTCCAAATGAATACAGAAAAGATCACATCTGGTAGTCATACAG
TTTTAATCATTGAATCATGAGGCTCAAGTAATTAATCATCTAATAAGAATTTGATAGGAG
AACTCGCCTACAAACCCAGCATAGAACCCAATATCTTCTGTTCTTTTTGCAACATGCAAG
TCTCTTATCTGTAAAGAAGTTGGACATAGTATGAAGACTATTAAGATTTAGCAATAGATA
CATCAGAGATGGGTGTATGCATGGATAAGAAAAGGTAAGTGAAAACAAACTGAAATAAAA
AAAATCAGGAGTGCTTTTCCTAAATAGTGGCCATCTAAGTCTAACCAAAAAAAAGTAGGA
TAATAATACATACCATGAAGTACAAGAAGGGGAACAGCGAAGATATTGGTAAAGCTGGAG
AAGCCAGAGGAAATATTAGAACTTGAAATTATGTCCAGAAAGAACAGTACAATCTAATAG
ACGATAACATTGACTGGGTTAGTTCAGAAGTGCTGAATTAGAAGTTTGGAACTAGTTTAT
GGATATTTCAAAGTACTCAATAGAATTCGTTAAGCAATGATTTGTTAATGATTTCCTTGT
TCATGGCGCTGGATCAATCAATGGACCCCTTTGTTGATGTACGTGTTGAATGAATCTGTG
TGTATACTTGTCTGTACGTATTAGAAACGCAATGGATTATCCCTTCGTGAATGAATTACT
TTCGGATCTTGATCTATCTGTACAGAAGTCATTTTTTCGGCTGTGAGCACAGGAACTCTG
GGCTTTCGGGACGGGCCCCGGGCTTCGGGCTTTTACGTTGGGCCAGGCTCGGGTTTGCTA
GATGAGTTATTTTCAGGCTTCGGGCGGGGCTTGGGCTTGTTTCCTGTGCATCAGGCTTTT
TTAAGCCCGGCCCAAAACCCGGCCCAGCCCGACATATGCCCAGGATTAATCGGAACTAGC
TGATGGATATTTCATAGTACTCAATAAAATTTGTTAAGCAGAATCAAAGTATTAGCTTCG
TTTGGGATGTATGTGCTCCTTCGATTTGATCCACTTTTCAATCCAATTTTTCTCATACAG
ATATAGTAACATTCTCAGCAAGAACAAGAGATTGAAAGTGATGTTTTTTTTAGTATTACT
GTAAAAGACAATAGCATGAATAAAGTCATGAGAACGACCTCATACAGTTTAATTATTACA
AGAAGGGTTGGGCACGCTTTGCTGCATTGCTGATGTTTTTGGATTTTATAAGTTTGTACT
CAATCTATCTTAAATTATAAGGTGTATTAGTTTTTTGAGAAGTCAAACATTTTTAAATTT
GACCACATTTTGATGAAATATATCAGTATTCATAATTTCTAATCGGATTCTTAGATTCAT
CATGAAATGAATTTTTCATATTTTAGTATTTAGTATTGTGGATGTCGATATTTTTTCCTC
TCAACTTGGTCAAAGGTAAAAAAAGATAAAAAAGTTAACTATTCAATAAACTAATACACT
TTAGATTTTAGAACGGAGTGAGTATTAGGTTTGGTTAGTGAGGAAGATGATGGAGTGTCT
TTTCTTTTTTATATTCATATAATGCGGTGTGTTGGTGGGCTTTCGCGGTGTGATTTTGTG
CTGCTAATCAACTCATACTTATGTGGGAAAAATTCTACGTTGGTGTTTGTTGTACTACAT
TTATGCTACAGTATCACATGTCGACGCTATTTTTTTTCTAGGTGATTAGAGGGTGCATAA
GATTAATAACTTTTTATAGGCCGGTTGCTCCCAATTGATCTGAAAAATTGTTGACCGAGT
CAAAATCATGAACGAAATCTAGTATTTAATTTCTAAATGAAATAAGAGAGTACAGTTAAC
TAAAATAATTAAGTGAGAGATTGTTGAGTCGGTCAAAATCGGTGATCCAATTCCAAATTG
GTGACGTCAATTAAATGAGAGGTCTTCAATTCTAGGGAGCTTAGTGATATAGTATATATA
TAGTATATATTTTGACATGCGGGGAACCGGTGGCGCATCACGACTAGTGAGCAGGCATCT
ACTTCGAGACCGGATATGTGGTCTAAACCCTAATCGTAATAAGCTTAATGTATCCTGCGA
ACTATGGCCCCCTCGCTTATATAGATACCAGAGGTGCTAGGTTACACAAAGTTGGTTACA
ATAGGAAAGGAATATGGCGATCACTACATCGCCTTGGATTGTACGCCAAGTCTTCGGAAT
CGTCCATCTTGATTCCAATACTTCTAATGACGGTCGAACAGGGCCGGGTGTCCGGTCGAC
GAGAATAGACAAACGACACGTGGACACCCTAGTCCCAGACTCCCAAACGGGGTATGTATG
CGATGTCTAGCATCGCGTGGACGCCCCTCGGGGTGCGCGGATCGGAGGCCCATGGCTATG
AGGAAGTGCGTTCCGGCAGTGTATGATGCGGATATGGTCTTCGGTCGTCGGTGGTCTCCG
CGAGGTGCGGTTGGCTGCGGGCCTGCGGCTGGTCTTGGTGCTTCTTCGTTGATGGGCAGC
TTCAATGGTGGTGATGTTAATTTGGCGGGTTTGCCGACATCAACGCGAGATGATGTGCGG
CCAAGGTGGTGCGGAGCTTGGTGAAAACCATGTCTTGGCCTCATGCCATGACCATTGATG
GTGGCGGCTGTGGCCGTCGTTGACCTTCATGGAGGCATTGATGCTTTGTTCTCCCAACCC
TCCTGCATGGATCTGGCCATTCAGGCCTCTCCGGGAGAAACCTTGATCTGTGATCGAACG
TTGGTGGCGCCTCGGTGTCGTATTCCTTCTTGGGGGCTTCGTCTTGGGAGCTTGGTGTCG
GCGAGCGGGGCCGATGGATGGCAGTTAGCGGCGGGTGTGGCGTCCAAACTTGCGTGGCAA
CGACGATGGTGGGAGCGATGTCGGCAATGCGGCAATGGTTGCGGTAGTCGGCTCTCCTTC
GGCGTGTCCACGGCTTTGCCTCGGTTTGTTTGTTGCTATGGAGTCGAAGCTGCGGTGACG
GGGCCACGTGGTACATGATGACTGGTTGCAAGTAATCCGTTCGGCGATCTCCCATGGCGC
CAGTTGTGCCTCTTTTTGTCCTACAATGTTCTCCGTCATTGTCGGAGTTGCGTCGTCTGG
CCGCGGGTGGTCGAGATTTTGGCATATATCTTCATGCAGCTTCATGTGTCCATTGCTGTG
TGGGTTCGGTCGACGATCGTCTACAACGGAGTCGGAGTCGTTTGCTCAGAGTGTAGGGAT
GACGATGACGCCTCTAGGGGGGAGTGATGAAGATGATGCCTACGTGTTGTCTCGCCGTGA
TCCTCTTTGAAGTGGTGTGCGTGGGCTTTTTTTATGTGTGTCGCTCAATAGTTGTAACGG
TTTTCGTCCAGTTTTTCATAATTAACTGGACAATCTGGTTTTCGATCGGTTTTTCCTAAT
TAACTGAGCAACTCTTTTCTTCTTAATGAATGCAGGATAAGTGGCATTTTGAAAAAAATA
TGATTTGATTATATTCAGCACAGCCTCGAGAAGCTTCACTATGCATGGATAACATCTAAA
ACGTGTCGATAATGTCAGGATGAGTCAGGCTAGACCAAACTTGATATAAAAGAAATCTGT
AAGAAGTGATAATATCACCAAAGAACTAATTATGAATATGGATGTGTGAAAGCTAGCTAT
CCATATGCAAGAACACATGTGGGTTGTGAGACTTTATGGGTTTCAACTTGTTCGGGATTA
AAAGATTTGTTTTTATTGTGATCATCGTTATAGTAGTAATGCTCATCTACTAAAATAAAA
TAAATTTGGAATGATTTTCTCAAGTGCTCCCGTGACTTGGAAAGTTGGAAGCACCATAGC
GCTAGAATATGTTCTGGATAGACTTAAGAAAGATATCCTACGGTGGCACCTTTACCCGCG
ATTCTGTGCTTCCATTTGCATAATTGGGTAACCAAACGATTACAACAAAATGAGGAAATT
CATAACGTTTTATCGACATTGGTATACAATCGCCTTAAAAAAAACATTGGTATACAATCA
TGACTGTGTGCCACCAGTAAGAGATAACAAAAGATAAATAAGAACTGTGCCTCAAACTGG
TCTCATACAACCGGATGGACTGTTACTGACTGGTCTGAACGTCTCAAACGGGTCTCAAAC
GTCCGGATTAACCGACATCTCTAATATACAATTTAAATATGGGATAGATTTAAGGCGACC
GGATGTCGGCCTGGCTCGCAATGACCCCACATATATCCGTCCCTATCCGTTCGTCGGATC
AAACCCTATCCACTTCACACTCCACTCCTCTCCATTCCCTCCGCCACCAAAGCTCACCTC
CAACGATTTCCGGCCGTCTCTACCATGGCGGATAATGGATCTGACTCCGATCAGTCCGGA
TCCATCGACTGAAGTGTCATTCCGTGAGGGTTAGAGGAGGCAATGGTGATCCGCATTCTA
GTCCACCGCTCCCGGAAGGACGGCACCCGGTCGACGCAAGGATCTGTTTCGTGTGACTCC
ATAATGTTGACTCAATGGGCACTCGGATCCTTTGAGGCTGGATCATCGCGGTCCTGGCAA
CCGAATAATCCCTCCTTTACGCTTTTGACAGCCAAGCGCGTGAAAGCTTACTAAATTTTC
GGGTCCATTCAACATGAAAAAAGAAAAAGAAAACGAGGTACACTGAAACTGAACTCAATT
CGATCGCCCTGATTTTTGTGCTCAAGGAAGGATGTGGAATTTTGGCACGTACTACGAGTA
GTATATATGATCTCGACAGCTTGTAGTAATACAACTGAACACTGTGTATGTGTTTGTGGT
CACAATTAGCTCCAGCCGCAATAAATTGACATGGATAGACATGGACTGTGGAGACATATT
AAGCCGCCCAGGCCTGATCGACTCTCCATGGTACTATACTATTTATATACTTTAATCAGT
GAGCTATATTTAGGTGGTGTTTTTTTTTAAGGGACTAGATTTTTTTAATTTCAGGGACTA
AAGAAAAAAATTCATTCAATAGAGTCTTTTTCTAGTCTCTTAAGAAAAAAGTCCCTCCTG
TTTCTTTACCTAGGAACTAAAAAGAACTTTTTAGTGTAATCCCTAGGTAAAGAAACATCA
CCTTAGCTGTAATTATCGCGTGCATCCACCATCTAGCTAGCTAGCTCAACTGGTCACACG
ATATTCCCTTTTGGATTTATTTTTCCCAGGGCAACTTTGTTCGTTCTTTTCCGCGACGGT
TCTTCTGAAATCTGAAATCGCCAAGCTACTGTTGTATACTACTACTTAGTATTTAAAAAA
TGTAAGTTTAAACCTTCAACCTCTGCATCAATCCATGCATACAACCATTTTTATTATATT
ATGTATTAATGAATCGATGGTGGATATATTTAAGAATCAAATCAATCAAATAATCAGAAG
AGCTAGTTTGCACGAATGAATAAAGATGAAGACGGGGATGGTGGTGGTGCTGATCGATGG
AGTCGTAGCAGAAGTACTCACCGGTGCAGAGGGTGACGACCCATACGTACAGGAAGCTGC
TGTAGGGGATGCCTGGGTTCTCCGCCTTCCTCCGGTCAATCGCGCACCCGGGGCACCCCT
CCACGTACAACACACCGCCGCCCTTCTTCTCAAGCAACGGCACCGACGACTCTGCTGCCG
CCTCATGCTGCCGCAGCCCGTCGTGGTCTTGCTCCTCCATATTCAGGATGGTCTTGGATG
GAGCTGGGCGCCGGGTACAAATCCTCTGCTACTGGCCGGCGGGGGAGTAGTTCTCTGGTT
GCAGTGGTGCGAACCCAACACTAGTTTCTTATATAAACTGCACGTGCTAGGGGTGGGAAA
CAGGTGGATTTTAGATCACTGGATTGTGTTAATATAAGTCTACAGACTAAGAGCAACTCT
AACGCAGTGACCCAAACGAACACTAATTTTGTTCGGATTTTATTTATTTAGGTCGCTCGT
CCGCCTAGCGGACATGAGTCACACACGCGCAGCCGGTGGATAAACCCAACGCACAAGATG
CAAAAAAAGCGGACAAGTGAGGCTGCCGGCGTGGAAGACGTAGCTTTCCTCTTGCCCGCC
GCGCTCTTCCCCGGTCGTGGCTAGCATGACGCTTTCCTCCCACCACGGCGTCGCCGCCAC
GATGGCCGAGAATCCCGCCTCCGTCGCGCCCTCCCGCTCCTCCGACTAAGATGAGGAGGG
CACCGACACCAATGCCTCCAACGATTCCCACCCGGACGCTGACCAAGAGACCCCGCTTCC
CGACTGCCCGACCCCACCTCCTCCAGCGCCCGCTGCCACTGCCTTCCACGAACCAGCCGG
CCCAGTTCCGTCGTCTCCGCCACAGGCCCGCAAGGGACGAGTGTCGCGGCTGCGGCGGAG
GACTCGAGGGGGTTGTTCCAGCAGCTGTGGACGGACGAGGAGGAGCTTCTTATCCTGCGC
TGGTTCCTCGAGTTCACAAGGGCGCCATCTATGACGTCGCATGTCACATCTGGCGCCCGG
CCTTCAAGCGCGACGGCGAGCACCGCGGCGGCCTGCGCCGGTGGACTCACCGGTGAACAC
CACGGCGGACTGCACCGGTGGCCTCGTGAGTGAGCTCCACGGTGGCCTGCGTCGGTGGCT
TCATCTCTGTGGTTTTGGAGGAAATGCAACGTGGAGGTTGTGGAGGAAGTGCGGGTCGCT
GATAGATGGGACCAGGGCGGACACGAGAGGGGAGGAGCGGACGACGGGAGCGTTCAGTTT
TGTTCGCCACGGACCCATTTGTGGCCCATTTTTGCGTCCAGTTTGGGTCGGGACGGACGA
CAAGCAAACATTAGGTGGACACGCGCGTCCGTTTGGGTCGCCCGGTTGGGCCAAGTTTTC
TGTCCGGATGACCCAAATGGACAATATGGGTCGCCCAGTTGGAGTTGCTCTAAATACTTA
TCTACTAGTATCACCTTGAATTATAAGATGTTTTGTATATTTTTTCAATATAAACTAGGA
GCATCCTGAAATGGAGGGGGTACTATTTATAAAAGCATGAGTTTGGTGAATTCAAATAAT
CCGATCCACTAGAGATCCTTATTGGGTGCTTGTTAACGGGGGGATAACCCCGGGGTAGGC
CAAAAGCAAGGGCTCATCCAGTCCCCCTTTTCAAAAACATACACATGACGACATGTTCCC
CACGAGAGTCAGTTGCGCCTGGCCGGCTGCACGATCGAGACGGCTCGGGCGAGGCCACCC
CTTCTCCACTCGACTGCGCCCCGCTAGTCGGCAGGTCAGCCCAGTCACATCGCCCTGACA
AACTGCGTCAGGGGCATCATCACCAAAGGTATGGCTACAGTGGAGGGGACGTACCACTGA
CCATCGCCAACTACGACCAGCCGAGATTGCATAGTGACGAGCACGCCCCCATGCACTCCA
TTACCTGCTCCGGCGTGGGCAACAGTGCAACCAGCCGTACGATGACCGAGGCTGGCTACG
CAAGACGACGCGCATAACATGATGCACACCGCTGCATAACAATCACACACCAATGGTGAC
GCCCGGCCGGCGGGACCCAAAGCCTGCTAGCCGGGTCCCACCTGGTACCCTCTATTCCTA
TTGTAAGCCAGGGGCTGGCATATAAAACCACCTGGCACCCCCCGATACAGGGGGTCGGCC
GATCACACACCTACACACATACGAGAGGGGAAATGAGAGCTCTCAGCTCCTTCTTCTTCC
TCCAGCATACAGCTCTAGGAGCACATGGAAACCCCGGCCAGATCATCAACTAACTCAAGC
AGGACTAGGGGTGTTACCTCCCACGGAGGGCCCCGAAACTGGGTACTTCGTGTGTCTCGC
ACCGCTCGTTCCCAATCCCGTTTTCGGAGCCTGTCTGCGTCCTTTCGGTCCCAATCACGT
TTGATTAGCCACCCCATGGCATCTGTCGTGNNNNNACGACGACAGTTGGCGCCCACCGTG
CGGTCGTCCATGACGCTAGCCAGAGTCACGCTCCGGGCGGGACCCTTCACCAACTCCGCC
GGACGCACCGCGCCCGAACTGATTAGCATGCCCATGGAGCTTTCCCTCGCAGAAGCTTCC
GCGACACTAAGCCCCGGCTCCGCCTACTACGCAAGCTTCACTATCGCTCCTCTCGACGAG
ATGTGCCCTAGCCACGCCTCACCCGACATCGACGCTCTCTGCAAGATCTTTAGTGAGTTG
CGGCTCGACGATGCGCCTACGATCGACGAGTACCCGAGTGAAGTGTTGGACTGCGCCGAC
CCACTATCATTCGCATGAACGACCGCCTCGAGCGGTGCCTGTGACTTTCGCATCCTCGCG
GAGGTGATGGTCACGGGCTCCACCATGATATCTGCTCGTGCCAGAGCCAAGGCGCGCACG
ACCGTTGCCATAGCTTGCCCTGGCCCCTTCGATCCTCTCCACTCCATACTACAGGGGCTG
AGCACCCCTATCGCGCCAACGGCTAACCCAGCCATAGCCGCCACCGAGCTGGAGGCAGCC
CACCAGCAGCTGCTCATGGAGGCCAACACTCTTGCGTCCACCAAATGTCGGATGGAGGCT
ACGCAGCGAGGGTACAACTCCGCCTACAGCCTCACCCCGGCTAGCGACGAGCCCAGCCAG
CGCGGTGCGGTTCGTAG