morexGenes - Barley RNA-seq Database

Contig contig_54287
Source Contig contig_54287
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54287 (9177 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_54287

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68151	3	3033 bp	MLOC_68151.2	Available	Available	LOC_Os03g42280.1, FRAME:+2, EVALUE:9e-155, 13103.m04552 protein B3 DNA binding domain containing protein, expressed
MLOC_68153	3	1507 bp	MLOC_68153.1	Available	Available	None
MLOC_68152	1	736 bp	MLOC_68152.1	Available	Available	None
CDS Structure of MLOC_68151

CDS Structure of MLOC_68153

CDS Structure of MLOC_68152

Contig Sequence (9177 bp)

>contig_54287 9177 assembly3_WGSMorex_rbca.fasta
GTTTGGGATGGGGTGGCGGTGGCGGGTGGGGCAAGGGGTGGCGCGGCGGATCGTCGGAGG
GAGGATCCCGCGGTGGAGGACGGCGTGGATAAAGTGAGCTCGGGTGTTTTTCTTTTTAAT
GACTGAAACGTTTTTCTTCTTCACTTAAATGTGAACGGCGGGTTGAATATACGAGAAAAC
AGAAGGACTTTTTTGCAAAACCGTCAGCGACGGACGGTCCGGTGCGACGTTTCTCCGCCA
TGTCGCCGACGCCTCAGCCCCTAGCTATTGCTGCCTTCCGATCAGGGAGCTGGGCTGGGG
CCGAGGAGGATCTTACATGGATCAGGGGCCGGGGCAGCGATCCGGGATCCGCAATTTAAT
GGCGATCCCGCGGATGGACTCGACGCGCGCACGGCTCGTCAAAGATGAGGAAGCTGCGGG
TTGAAGCTCTGCCCTGTCAATGACATCTATGCTGAATCCCGAGGCGCTTCGTGCCAAGGC
GAGTTTCAGGCTTTCAGCAACAAAATCTCACCGAGTTTGGTTGTCAGGATCGCAATGTGC
TTGTTGCTATGTTAAGGTGAGACACTGCTCTTGCCTCATGCTCCCTCCGTCCTAAAGTAA
GTGATTTAACTTTGTAGTACTAAAGTTAGTATAAAACCGAGTCATTTTTGAGTCACTTAT
TTTGGGAGTAGTATAGTACTGCTGTCACTGTGAGGCCAATTGAGCAGTACATTTGCATGA
TGAGGTTTCGTTCAGTTTAGAAATTTTGGAGTTCAGATGCTTGTCTAGCCCCTCATTAAT
TGTCTGCCCCCTTCTTGGAAGTTGGAGGCTCAGTTGCTTCCTTCAAACCTTTTCCAATGC
AAAGGTGCTTAGATGAGGTATTAAATGCATTAAATAGCTTAGCAACTTAACTTTCCAATG
CATAAGTTAATTGTTGGCTTCTTTGACTGTTGGCCTGGGCTCCTTTTTATTGTCCGCGTG
CAGCTACTTGACTTGCTGCATTGTTGGCTACTTTGCACGGAGTGACTGAAACGCCGGATG
CACTCTGGCTCTAGGGTCTAGAGCAGCAGCAATCCTGGTGCAAGCATCTTTGAAAATCCA
GGTAACCTATTTGCGATCTCTACTTCTGTAGTATCACTGCCTTTCTTCAAGATTGTTCTT
CTCTGCTGCGCCAAAGCATATACTCCAATTTCAAGATTTTTTTTTTTTTGCCTTTCTTCA
AGTCTGAAATGAATGATTACCAGCATAAGTAATCAGTAGCTTTGAGCTTTCCTCTATCCA
TCGCCACTTTTTAGCTCTTGGAGCTTCTTTGCAAATGTAAGGTGTTTTCTCTGGCCCTGT
GTCCTACTTACCACTTTCAAGACCTTTATTAGTTGTTGTCAAAAAAAAAAATCCGAGTTG
TTGAATATCAGCATATAAAAGGTATCTTTACTTTCTTTGATTTTTTCGATCGTTTAATGG
GTAGTGTTTCTACTTTCGCACCTGAGCCTCCTTGCCGCAGAAACATGATGTAGAGTGGCA
ACTGGCAGCTCTTCTGTACTATTTGCAGTTTTCAGTAGAAATATTTTGTGCATAATTTTA
GTTTTGAAGGTAGGATGCACAAGAATGCGTGCAGAGTAACATACCACAAGAACAAACCTT
ACTCTCTATAATTACCCTTGTGCTTGTGGTTAGCTGACATAGCTGTAAATTTCTGTTCAC
AGGGCATCCCAGATGGAGAGACCTTGTGACTGTTGCAAGAGATATGCGGACCATTTGGAT
GAAAAGATGAAGTGTTTCCGCAGGCACATGGGTGCTGATTTTAGACATGGCATGGTAAGC
CTGTTATGCTTTCAGTGTCTCAAGTGTTCCCAGATATCTTCTGTTCACAGTTTAACATGC
AGGGTTAGTCAGGTTTGTGATGGATAGTTGCCTACTAATTGGATAAACTTGATGGCAGTC
CAGTTGGTGTTAAACAAACAGCAAGAAGTGGATAGAGAAGCTAATCGTACACTGTGCCAT
TGTGAATAGATTCTGTAGCTAAACTCATGGATTCCGGTCCAGCATGCAGTTATTCATGTA
AGCCTGAAACATTGTAGAAAAAGAACTTCAAAGCTCAAGTTGACAATTAAAACTGGAGCG
GTGCTTTCTAACTCCGAAGCTAATCAGGCGCTGTAACATTGTGGATTTTTTGTCAATATA
AAACATAAGTCATGTAATCAAGCTCCATTTATCTTTTGTTCACAGTTAACATGCAGGGTT
AGTTAGGTTTGTGCTGATAAGTTGCCTACTAGTATTTTTCCTTTTTTGACAATTTCCTAC
TAGTTGGTTGAACTAATGGCAGTTCTGGTGTTACACAAATAGAAAGAAGTGAATAGATTC
TGAACACATTGCTAGTGAGTAAAATCTGTAGTTAAACTAATGGGTTCCAGTCCAGCAGTT
ATTATTCCTGTAAGGCTGAAACATTGTAAAAGGACTTCAAAGCTCAAGTGGCGGTCAACA
TTGTGTGTTTCCTAATTTCAAAGTTCAGTGTGCATTGTGTCATCGTGAAATTTTGATTAA
TATTAATCATGTAACATATTTCCTGACTAGTCTATCAAAACATAGTTCTCACACTGCATC
TGTATCATATTTTTCGCTGCGGTCATCATTGTTAGAAACTACAAAATTATTGTGTTTATA
ATTCATACCAACATGTCTCCATTTTGTTTCAGATCATACCAAAGAAGTTCATAGATAATT
TCGGAGGAAAAATCTCAAGAACCATCGAACTAGAATCTTATAATGGTAATATGTATGTCT
TTGAAGTTTCCAAGCATATGGGTAATATAGCCCTCCGGCATGGATGGCAGGCATTTATAG
ATGAACATCACATACAAGAGAATGATTCATTGCTGTTTCGTCACATTGAGAAATCCCGTT
TTGAGGTTCTGGTCCTTGATTCTGATGATTGCGAAAAGGTGTTCTTCTGCCCTGGCATCA
ACATTGCTAGTAATGCTGAAGAAAGAGGTGTGCATTCTGTTGATATTTCAAATGGCTCCC
GTGGTAATGCCACAAGATCACCAGGAAGCAAAAGGTTTGCTACCTGCGGAAGGCGTAACT
CAAGCCATCCTAGAAAAGTGGCGAAGACAGTCATAAATTACTCCTCACCTGAGAATTCAG
GTTGCCTTTTGATTGTCTTCTGCACTGACGTTCTCTCAGTTATCTGTTCACGATACATTT
TATATTACAACTATATTGCCATGGTTTTCACCGTTGAGATTATGTACAGGAGAGGACACT
GAGAACGAAAATACAGACACTATATACTCATCATCTGAGGATTCAGGTTACATTCTGATC
CTTTTCTGCATTAACATTACTTCCTGAATTATGTGTTCACAATAGAATTTATATTATATC
GTATATTGTCACCATTTTCACCATCGAGATTATGTACAGGAGAAGACACTGAGCCTGCAA
ATACAGACATAGAATACTCCTCATCTAGGGATTCAGGTTACATTTTGATTCTGTTCTGCA
TTAGTATTACTTTCTGAATTATGTGTTCAAAAAACTATCTCTATTAGATTTTATTGTTGT
TGTTTTCACTGTTGACATCTGTACAGAAGAAGGCACTGAAGACATTCCTTTGGAATACAA
ATCATCTTTTGAGCTAGATGATGGCCACCCACCTTCAGGGCATGATTATGTCTTAGCTCG
GGGAAGTACTCTATCCAGTGTACAGGATGAGAAAGTAACTACACTTATCCAGGATGTTGG
AGCTGAAATTCCTGCGTTCGTGGCTGTCATGAAGCCGAGCTATGTCAAGTCACAAACTTC
TGCTCTTGTACGTTTTACTGTTCTTTTTTGCCAAAGCTGTCGTTCATAATGTTTAAATGC
TTATATTTTAGATTCCTGTATGAGCATTTTAATCCATTGCATATTTGGTATAATTGTGCT
TTTATTTTGATTGCGTGAAGAAAAAAGAAAGTGTGAATCACCCTTATAATTATTTTGAGT
TCAGTAAAATGAAGACAGTTATATTTTCAGATACTAAAATATACGTTGTAGTACATTGTA
GCATCTAGCCGGGGAACATTGTGCATCTTTAAGTTAGATATGCACGAAACGATGTTGTTG
AAGTTCTATAAGATAGCTGTTTAAATTATCATGTAGTCCCTCCAGTCCATATCAATTGTC
CCTGATTTAGTACAAAGTTGTACTAAGTCGGTGACAATTAATATGGATCGGAGGGAGTAC
AAGTAAGCAATGTGCTCAGATTGTGTTGTAAAGCTGTCAATTTTTTAGAACTAGCATCAA
CAACAACCAAGCCTTTCAGTNNCAAACAAGTTGGGGTAGGCTAGATTTTTTAGAACTAGC
ATCACCTTTCTTTTTTCTGATAGCATATATGCTCTTGGATATGCAGTCAACTTACTTGAC
AGATCATGTGCTTCAATGAAAAAAAATCTGTGCAAATAAAACACTTTACATCACGCAGGG
TGGAGTTACTCTCTGTATGAACTGATCCCAGCCTAGTCATATTTGTTGATCTGTCACTGA
TACTGTGCCATCTGGAATTAGGTCATTCCCAAAGGTTATGCAGATGAACACTTCCCACCT
AAAAGTCAAACCGTGGTACTGGAGTGCCCAGGCAAGAGCGAGAAGTGGCATCCTAGATTT
CACATCAGGAAAGATAAACACGGGGCCATCCTTTGTGGGTCTGGTTGGTTAGACTTTGTT
CGCAAGAGTCGAGTACAGGTGGGAGATATCTGCGTCTTTGAAAGAATGAAGAAGGGCACC
GGGAGAAAATTCTCACTTAGAGTACATGTACTTCACAAATCAATGTTGCATTCCGGTGGA
AGCGGAACTGGTCCTAAAAGAGTTAGCTTAACTCATGGCAAAACAATGGTTAATTCAGGT
ACCCCTAAAAGAGTACGCACGACTAATGGTAGAACCAGGGCAAAGGCAACTTCGACGACC
TGTGTTAGGAAGGAACCAGGTGATTGTACATCAAGATGCCCTTATTCCATAGGCGGAAAC
AAATTGGTGCACTTCCAGTTCTCTCTTTTCTGATTTGTTTTAGAAATGTTTCCAGGAGGA
GATGCGCCTTATTCGGTTCACAGCCATGGTCATGAAGCACGTCAGGGGCCTGTTGACTCT
GATAAATCTAGAAGGCCTCGGAAACGTCCCTACATAATATCATCCACCGCATGTCTGACC
AGGGAGCAGAAGATGAATGTCGACAAGAGAGTTCGCGCCCTTCAGTCTAAAGTTCCCATT
TACGTGTCCATAATGAACAAGAGCAGTGTTGGCAACAACAGCATGTACTCGGTAGTAAGT
AGACATCTTCTCTGAACACATTTCAGCTGTCAATCGGATGTAGTAGTAGTTATTCACTGT
ATGTGTTCTTGAGCCTGGTAAGATTTCAGCTAACCTATACAACATTTTGTGTCTGGGAAC
AGAACATTTGCAGGGAGTATGCTGATGAGTATCTCCCCGCTGGAGAGCAGACTGTGACAC
TCGTAACAGCACAGAGGAGCAAGTCATGGGAAGTCGAGGTGCACCCGAGGGATGGCGGCG
CAAAGGTGCTCAGGGGAGATTGGCACAAGTTTGCCTGCCACAATCATCTGCAAGTCAAAG
ATATCTGCCTGTTCCAGCTGATGACAGACCAGAGGAAGCTTACGATGATGGTCGACATCA
TTCATCACAATGAGAAGCGTTAGTTTGAACTTTCCAGCACATGAGAGTGAACCTCTGGTG
GCTATTCGGCTGCTATTTTGTGTGTGTTTTTGGTGGTTCTGTAATCTGCAAACCGTGTGG
TTGTGTGGCTACTTTCAAAAGTACTGGAGGTCAATTGGAATTTCCTATAAGAAGACAAGT
TCTTTACTAGCTGGGTAATTCAGGTAGTTATTTGATGATAGGTTGGGTTATTTACTGAAT
CGATGAAATATCATTGTCTACTAGCTGTGAATGCTAGTTATTGCAACTTCCTGTTAGAAG
CCAAGCTTCATTGTTTGTTTCCCTTGTGTTTCTATATCACCATAAGGAAGGTATGAAGGA
TGAAGTTAACCAGTTGGAATACATCTAACAGAAAGAACTGGAGGTGCAAGGTTATAACCA
CATTCAGTCATTATATAATCACTTGGAAGGCAATCAGAGGAGGAACTCTTACTACAAAAC
TTGGATTATTCGAGTAGATGACAACCGGGAACATTTAGGACAGAACTATAGATGCACTTA
TCCTTTTGCATGAGGTGATGAACTTCGTAACTATTGGTGGGCAATTGTACCATCAACCTT
ATGCTGCATCAAAGAACATATAAATAAATGAAATAAAATAACTAAAATCAGCTCAAATCC
TGTACGGTGGCAGAATGAAAAAAAATGGAGAGAAATCAGCGATCATAGAAATATAAAATA
TGAAGCTCATAATTCTGAACTCATATGAATATAACAGTGCAAATCATGACTTCAAGATAT
GTTCAAGAAGGAAAATGTTGGACAACTTATGAAGGATATTCTGAATTCTGAAACCTCTCA
AAGAATCTGGGGAGGTTTATTCCAATTTTGTTAGTGAAAATTAGGTATCATACGTCAAGA
ATGGTATGCCAAGATCAAGCCATTCCTCTGCTTTTTCAATCTGAATTAGAACTTCTGCAT
ACACCTATATGTACTGCAATTATTAGTTCATAAATTTGACCGTGCATAAACTTTAAAGTA
CAAAAAAAAACTTTAACTACGACTGCTCCAACAGAAAAATGAAACATCTGCTTAGTCAAG
ATGGATGGACTAAACAATTACATTTGCTTACCAGGAACTAAAAAGACACCCTGCAGATCA
CTTACACATGAGAAAATAGAGAAGTGTCCTTGTCAACACACAGCATCATGTAAAACACAT
GGCTACATACAACCTAGTGCTTGGAAAAGTTTCAACTAAATCATACAAACTAAATAAACA
TCAAATAATCACAGTTCACAATAGAGTAGATCGACCTTAATGGCACCTCACGCATCAATC
AGTTGAAAATTCATCACAATATTAAATGAGCATTATTCAGTCCATAAATCCCACCAAACC
TGTCACTATAGAAATCTTAATCGCAACCATCAGGAAATTGCAGGTTTCAAACAACTATAA
TGCTTAGAGAATTCATATAATCTGCAAATACAAAAAATAAACATTATATAACCATGGCCT
ACCAGTTGACATTATTATTTTAAATCTAATAAGGCAACGGGTTTATCTAAAAATATTGAG
ATAATCATATAAGTCAGAATAAAGTGAAGATAACAGAGACGGTGGAGGCAATGCCAGTGC
TGCAGAGGTCACAAAACAGTAGCCCGATGTGAGTGCACATTGCAACTCAGCTTAAGTAAA
TAAATTTCTTTATCAAACAAACCAATTACATCACAATTTATCGACTTGAAGACATGAACC
AGACTCTGTAACAGCCTAACAGGGCCCATCAATTGGCATAAACACATCGAAAGACAACCA
GAGAAGGAACTCTGGGTACTAGATGACATCTAGGTAGAAGAACTCCTTGCCATCCCCACC
AATCAACGCCTCCTTCCAGCTTATCCTGCTAGGTGTTCTTGACTGTAATCCGATTGCTTC
TGGTTGCCTCCTTGACTCTCAGCAACGTGAAGGCCATCAGTGAGTTTAATTCGGTTGTAC
GTGCTCCCACATTGATAGAAAAACAAAAGAAAGCAAGTTACTCATGTGGCCTGAAATAAA
CTCTGCAATAAACACAAAGAGAGGGGCAAAATCGAACCTTCTTCAAGCGATTTGGGCTAG
CAGGACTGGAAGACCAGGGGGATTTGATTGATACGGCTAGATGACTGTCTAGTACACCAG
CTCCTCGACAGATGGCTCCTTTCCACTCGCTTGGCGCTGCAGGATTGCTCCCGAGAGGCC
GAGACAACTTTCGGAGCTGTCTCCTGGTCACCGCTCTTGAATATAACAACTTCCGGTGCT
CATAATTCCGAGGTCATATGAATATAACAGCTCAAATCATGACTTAAGACATGTTCAAGA
ATGAAAATGTTGGACAAAGGATATTCCGAACTCATAAACCTTTCTAAGAATTTGGGGAGA
TTTATTCCAACTTTGCAAGTGAAAATTAGGTATCATAAATCATAAGATCAAGCCGTTCCA
CTGTTTTTTTTTCAATCTCAATTTATGACTTTTGCATACACCTATATGTACTACCATAAT
TAATTCATAAATTTGACCGTGCATAAGCTTTAAACTGCCAAAAAAGACTTTAACTACTAC
AACTCCAACAGAAAAATGAAACATTTGTTTAGTCAAGATGAATAGAGTAAGACAGTTATA
TTTACTTAGCAGGAACTAATAGGACACCCTGCAGAACAAATACAAATGAGAAAATAATCA
CAGTTCACAATAGAGTAGATCGACCTTAATGGCACCTAACGCATCACTCAGTTGAAAATT
AATCACAATATTAAATGAGCATTACCTAGTCCATAAATCCCACCAAGCTTGTCACTAGAG
GAATTTTAATCGCAACAATCAGAAAATTGCAGATCTCAAACAACTAATGCTTAGAAAATT
CAAAATCTGCAAATACAAAAAGTAAACATTAGATAACCATGACCTACCATTTGACATTAT
TATTATAAATCTAATAAGGCAATGGGTTTAACAAAAAGATTGAGATAATCATTTAGGCCA
GAATAAAGTGAGATAAGATAACATAGACGGTGAAGGCAATGCCAGTGCTGCAGATGTCAC
AAAAACAGTAGCCTGATGTGAGAGCACATCACAACTCAGCTTAAGTAGATCAATTTATTT
ATCAAAGAAGACGATTACAACTTAACTTTATCTGACTTGAACACATGAACAGGACTCTGT
AACACAGGGATCATCTATTGACATACACACATCGAAAGACAACCATAGGAGGAACTGTTA
CTACAAAGCTTGGGAAGATTCGACTAGATGAAAACTGGGTAGAAGAACGGAACTGTTACT
ACAAAGCTTGGGAAGATTCGACTAGATGATGACAACTAGGTAGAAGAACTCCTCGCCATC
GCCACCAATCCACGCCTCCTCTTCACTGCCTTTGCCTTCAAGGTTCAAGCACATCCTGCT
AGGTGTTCTTCACTTGTAATCCGATTACTTCCGGTTGCCTCCTCAACTCTCAGCAACGTG
AAGGCCATCAGTAAATTTAATTCGGTTGTAGGTGCTCCCACATTGACAGAAAAACAA