morexGenes - Barley RNA-seq Database

Contig contig_54272
Source Contig contig_54272
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54272 (8693 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_54272

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68143	1	1190 bp	MLOC_68143.1	Available	Available	LOC_Os01g66420.1, FRAME:+3, EVALUE:4e-127, 13101.m07189 protein PHD finger protein, putative, expressed
CDS Structure of MLOC_68143

Contig Sequence (8693 bp)

>contig_54272 8693 assembly3_WGSMorex_rbca.fasta
AACCGCGTTGCTTAACGCTTCCCGTTTAGCGATCTACAAGGGTACGTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCATGATAAGTCTTCGTGTGCGTAGAATTTTTTTNNNNNNNN
ATGCAACGTTCCCCAACAATGATCCCAACACAACACACGCTGATACTTCACGGGCAAGAG
CCTCGCATGGGCCCTTTCCATGCGAGGCGCTTTCAGCAAGCGGCATGGGAGCCGCGTGAA
GCCCCCTCACGAGGCCGCCTTCCGAGGCCCTCATTGGGCGGACTAGTCGAGGGTGGCACG
ACAGGGTCGAGCGGTGTTGCATTGTCACGTGGGTGGCTCGCGCCATGCCGAGCGGTGCTA
GGAGCCGTGCCAACAGGCACGGATAAGGAAGCTTTTCTCTTTTGTGTTAAGGTAGCAGGA
CCAGCTCATCTTCGGAAGTAGCTCCCAGGGCCGTGGAGTTGGAGGAGATGAATTGGAAGC
TGGAGAGCTCCGAGGTGGAGCTCGACCTTCTCAACAAGTGGTTTGGCGATGCGCAAGGTA
AGTCCGTCCTGGACTATTTTTTAAATATTTTTATTTTCCTCATTTAGGTGAGGTATTTTG
GGTTTAATCCTTAAGCATAGGGTTTTATTATAATTGCAGTTGTCACCGCGGAGGTCAGGA
ACCTCAAGGTTGAGATGTAGAAAGCAAGGCAAGAGGCCGGCAAATAACCCGATGGACGCC
CGCGTCGGCACACCCCTCACCCCTTCCTACACCCGCGACCCCTTCGCCGTCGCCGTCGCC
GCCGCAAACCCTAGCACGGGGAGCTTTGGCTTCGTCTGTGCCGGTGCTCCTCCAAGCACC
GGTATTGCGTCTCTCATGGGAGGCATGGGAGCACCTCCGGGCGGCATGGGCGGAATGTCT
TCTGATGTGCCTCACACACCTTCGCATGATGCCATTGAAGATCTTGCCAACATCGTGCGC
GACAATGAAGAGGAGGAGGAAGAATCGTCTTTGGATGATGAATCGGAGAAAGAGGAAGAG
GAAGATGAAGATGAACACGAGGCTTGATTGTTGATGGGCTGTTGATGTGAACTTTTGTGT
CATGAACTTGGTTTGGATTTTGAACTTGGTTGGATGATGTTGTAGGCATGAATTTGAACT
TGTGGGTATAAACCTTTTTATGTCATCATGAACTTGTTTGTGTCATCATGAACTTTTAAT
TCATTTCGTGTCCAAAATGTAACATATGACAAGCGCCGGTTGCTCACGTGTGTTTTATTT
TAACGCGTCTGTTGGAACTGCGCGTACGCTGAAGTTTACAACGGTCGCTGGAGCCAGCGC
TCCTCGCCGCGTCAAAACAACCGATGTTGCAAATACATTTTTAACGCTTCGATGTTGGAG
ATGCTTTAATGGAGAGGAGAACGTGGATGGTTTCTTGGACCAAGCAAATACGCTGCTCTG
CCACTGCTCCAGAGCGTGCGTGCTCGTTTCCGGAAACAGAAACTGCCGCGTCCTTGCGAT
TCTCCATGCCGATGCCGCGCGAACAGCGGGAACAGGAGCGAGCACGACGGCGCCAGTGAA
CCTGAGCTTTCCCGGAGGTAGGCCAGCCAGTGCCCAACCGAACTGTCCCATCGGTTCCAT
CGTGCTCCTATAAGAAGAGGCAACCGACTGCAGCTCTTCTCGCATGGCTCACCCGAGGCT
ACGGCCATGAGTACGCTGTTCTCTGAATCTCCGGTATCCTATAAGAAGAGTAGGAAATTC
AAGGACATGAACAGCCATCTTTGGAGTCTTGGAGACCGGGGAGAGCAGCGTGATATCTTG
TTAGTTCTTGGAGTTTTGGAAGAAAGTAGGAGCCTGCCAGTCTGCCATGGCCGATCCTAC
CTTACCTGCTTCGAGCTGTGGTTGGTTTGGTCGCTCGCGCCACGCCTCAAAGTGTCCTTT
CGGTTGGTAGGCTCCTTTGTTGTTGTTCCCCACCAGTGATCACAAATTTGTCGAGGCCGG
GGCATGTGCCGTGGCTATGCAGTTAGGACCTCACTCATCTCTCATCTGCAGCGTGGTGTT
CTTGCAACAGTTTAACTAGCCCAATACCTTGTTGAAAAGAAAAGAAAAAACTAGTCACGT
ACTCCCTCCGTTTCAAAGTTTTTCAAACTGTTTTAGTTTAAAAAGCTTATAGTATGGGAA
GAAGGGAGTACAAAATATGCAGTATTTTTCGTTATGAAGAATAAAGTACACTGTGTTGTT
GCCTTCTTCAGTTTGCACATGTGTTCTCCCCGATCGAGTTTTAACAAATGACACTTGCCC
ATAATTTTCAGCCATGCTATGGTAACAATGACGTAGACCTGATGAGAACTTGTGAAGTAT
AAGTTACAAGACAAACACATCACAAAGAAAAAAGTTGCAAGACAAATGAAAGGCCACCAC
GGGAGATTAGCATTTTCGTTGCGGATGAATGTAAAACTTTTAACACTTCAGTAATGAAAT
GCTTTCCCCCTCGAAAAAAGATGAAATGTCATAATTACACACCAAAAATATACAAATATT
CACGTGGCCCCAACCTAACTTAGATCTAAAGGAGGAGCGCGGTAACGACACCATCGAAGA
GGAAGAGACCATGATTGTTGTCGCATTGTGAAAGGGGGATAAGAATAAGAGATGTACATG
TATCCGATGGGTAATCATGGTCGCCAGAGAGTTGAGTGACTTGAATCTGGTAGTTAGATC
AGAATTTACAACGTTTTATCTACATGGTGGAAGAATGGGACATTGTTTGCGTGATTATGT
CTAACATGTTGATAGAATTATGCCAATAGAAACATGCAAAATCAGAGAAACACGTAAAAT
CGAGCTCGTTTCAGTCCCTTCCTCCTTCTTAGGGTTTGGCGTAATGCAAGCCGAAGAAGG
AGTCAACCACACCACCTTGATGGTAAGATTAGGGTTTGAAGGTGAAATTGTTAACACAAC
GTTAACCAGAGCCTTCATCAACGCGGAAGCAACGATGACAAGGAAGATGTTGTACGAAAC
CTCGCCGGCAAGATCAGGGTCGGCAAAAAGGTGGAAAGGGGTGGCAAGAATCAACATCGT
AAACCCTTACTGAAACGGAAGGAAGAAGGAAACGCAACGTGTAAATTTAGGTTTAAAAAG
GAAGAAGAAGATAAAACCGGAGGCTTGATCCAGGGGCACGGAGATCCAATGGTGTGCAAC
CGATGGCCAAATTTGGAGTCACGTTTTGTAGCAGTCACCTCTTGGGAGATCATACTCCCG
CGCAACGGACGGCTGGGATCTTGCCCTAGGGCGGAACGCACGATCGAGACGGGTCAGCCA
AAGCCGGGCGCAAATACTCGCGGAAGCACCCACAGGATTCCCCGGAAATAAAACCCACTC
CTCCTCCTCCATCTCCACCTCCACCTTCCAGGCTGCCTGCCCCTCCCTTCTCCTTCTCTC
TCCCCCTCCTGCCGCTCCCACCACCGCCTCCCTCCTCCCCGTCGCCGCGCTCGCCCGGAG
CCCCAGACGCCATTGCCGACGCCCCCCCATGGATGGCGCCGGCGCAGGAGGGGCGTACGT
CGCGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGCGGCCGCCGCGCCGGCATGATCAA
GGCCCTCACCGAAGGTGCGCCCGCCCGTCCCCCCCTCCCGAATCGGCCCTCGCTTCTTTT
TCCCCGGATTCGCGTGGCTGAGCTGTTTGTTTCCCCTTGCTGTCGTTGCAGATGTGGACA
AGTTCTTCAAGCTCTGCGACCCTGGTGAGCGCGTCCGATCTCCTCGGGTTTCTCGCCCGT
GCCGGTGATTCCTGAATGAGGGGGTCCTTTTGTGTCCGGCTGTTTGAGTTCGGTTGCTTT
AGTGTGAGATTGGAAGCTGAAATTGGAGAATTTTCGGTTCCGTTTTCTCCCTCACGTGCT
GCTTCGAGTTGGAATTTTCGGTGTTTTTCGGGTGCCTCCCGTGAATGCTGCGCTGGGTTC
CGGATGCTGGGTTTTGTTCAAAGATTGGGACTCTGGGTCGTAGTTCTTCAACAGAGAAAA
GTATTCCGGGGATTGATTCGAACTGGGGAATCTGTGCTAGCTAGGTCTTCCTTTCTTGTG
GAATTGTAGCACTCGGTTGTTGCCATCAGACTGGGATTGGTAGCTTAACCGGTCAACTTT
ACTGAAAATGCATAATGTATTAGGCAAGTTACTGCTGACTGGTTGACTTTCGGTGTGTTT
TTGGTGTCTTTGCAGCTCTGTGTATGCGTTTGTTTGTTAGATTCATCGCTGTTGCCTTAG
CCAATTAGTAGAGTCATGTGCATTAGTGACATAATGACGGGGCTGGGTAGTAGTGAAACT
GACTTTCTAGCAATGTTCTTTCGTTGCATTGATAGCACATCGCATGGATATCAGGGCATC
TGGTTGTGATAAGTGATTGCTTACCCTATTACTGTGAAGTTTTGGTTGCTTACCATCATT
GAATATTATATTACGATTTCGTCCACATCACTGTATGCATTAGAATTCCACTCTAGTGAG
CAACTGTGCATAGTAGTAGATCAACTTCTAAGCCGTAAGCACTGTAGTTCTGGGCATGGT
TATTCAGACTGATGGTGTACATGGTTACTAACTCCATGTTATTGAACAGAAAAGGAGAAC
TTGTGCCTTTATGGATATCCCAATGAGACATGGGAAGTGACCTTGCCAGCTGAGGAAGTG
CCCCCAGAGATCCCTGAACCAGCATTAGGAATCAACTTCGCTAGGGATGGAATGAATGAG
AAGGATTGGTTGGCGCTAGTTGCAGTTCACAGTGATTCCTGGTTACTGTCCGTCGCATTC
TACTTTGGAGCCCGCTTTGGCTTCGACAAAGACAATAGGTAATTATTCTATTGTTGAACT
ATGTGGGGTTTTTTTCTCCCCTCATATGCACTCCTTTTTTTTTCTGTCGATTTCATTTCA
TTGAGAACTCTAGATCAGTATGGTTTATGTTTTAGGATTCCTGTTAATCCTCTTTAACTG
TCGCTCCCACAAACAATCATTAATGTTGGGATTGTCAAATGGAATGTGTTCTCATTGTGT
TCTGTGCATATGCCTTACCGTGGACCATGTAAAAAAAATGATATTTACACTGGTAAGCTA
AATTAGTGAGAAATATCAAACCTAAATTGGTTATAGCATATGTTTATCAACTTTATAGCT
TTGTCATATTCGAATTTTATATTTTAGCTTGAAAGTTATGATTTCCACGCCCTGTTGTGA
CATGAGCAGGGGAAGGGTCTGGGATCCTGGAAATGCGTTTACCTTAATTATGTTCTCTCA
AAAGTTTTCTGTTTGCAGTTATAGTTTCACTTTTTTTTTCAGTAGTGAGTGGACACTGGA
ACCATGTTTTAGCATGATGTTTTGTAGGTTATTTTACCATCATGACTCGTAGAGATTACA
TAATGTAGTTTACCTCCCAGTATCTTGTTCTGTCTTTCCATGTATAATATTATGCATTCT
GTATTTGAAATATTAAATGCATGTATTGGTGAGAGCTGCGGCATGACATGATTTGCAGTT
TTGCACATCTTTGTCCTATCTGCTTTACTGTCACAAATATGACATGTTTGAAGTTTAGGT
CATCACTTATTACTTTATTAGTTCATCAAGTATCTATACCTGTCTTTAGTGGATATTGGT
TGTGCTGCATCGAGAGAAACCATGATGTTGTCGATTCACATGCTATTACAGCTGCATATA
CTTTTCAACTGCTACGTGGAATATAAGCTTTACGTGATATTTCATGGTTACCCCATTGAT
TTTCATCTGTCCTTGTGATATCATACTAGGGTTAAATATGTTTTTTGACAGTTGATTCAT
TATTCATGTTTGCGTGGTTCAAAAGATGGTTTTACTTGAGAAAATGGATCTTATACTATT
TTGAGTAGGCGCTGCCTTACTGCAGTTACTTATGTTTTTGTTTTGTAGCAGCGTAATGTA
CTTGTTGGCACAGCATGGTGTATATCCAATGCTACTCACATATTACAGATATTTGGAAAA
TGTTGCCAGGCATTTTAGAAAATGTGCACCATGGTTGAAGAGGGTTTGTACCCTACAAAA
TAAACACAGTTTACCATATTAACCACTCGTTTTCTATGACACTAGTTATCTTTTTTTTTA
GACAATGTGACTGGTCGTTCGCAATTTTGTGGCGATCTTTCACCAAGTAAAGCAACGACA
TTGAAGTCTTAAATCTTAAGATGTTTCTGTTTTCTTGGAGTAAAGCACATGCAAGCCTGT
AGCCAATCTCACAGTCACACACAAACTGCTTCCTCTATTCTATGCAGAGTCTACTGATCA
GCAGAATAAATCTTGTCTGTGAAACAGAATGTTTTGTTGTTTGCACAGAGTTTCTTTCAT
TCTTTGTGTTAGTCTGAGTCAGTTTTCGCACAGAGTTTCTTTGTGTAAGGTGTTAAATGC
CATTGGCTGTTTGTCTGTTTGAACAAATCATGCTTGAATGGTTTTGGCAACCATGGATTT
CTTTTTTGGTCAAAGACATCATAGTAAAAATATACTCCCTCTTTTCCTAAATACTCGTTG
TTGGGGAAAACTAGATTAGTTCTCCCCAACAACAAATATTATGGTACAGAGGAAGTAGTA
CTATATTCACTTCCTTGAAAGTTATAACTGCACTATCCGTAAACAATTGTTTTCCCTCTC
CTGTTTCTGTATCCTTTCTCCTTTTGCAATGAGTTGTTTCTGATATATTGTAAAATTTAC
CAACTCAATATTAAAAGCATGAAGATCTACTTCTGGACATTAGACTCGTCATATCATACT
AGTGTTCTGTAGTTCTCAGTGCAGATGATTTGATACAGGAAGAATGATCAGGGCTTAAGA
ATGGGGTAATCGGGATGAACCAAATCGTACTAGTTTTCTGTGGTATTCTTTTCCAAAGGA
CTTTTGCTATTTTCTGTTCTGCACATCTTCCCGTTCTCTTGTACTTTGTTTCTCCTTTGT
GTTCCATAAGAACCTAAGGGTGTCTGCCTGAATCCACTTCTTTCCAAGTAAGAAACAGTG
CCGATTGGCTGACTACTGTTGGGATAATAGTGTGCTAGTTTTAGCCAGAGTCAAAACAAC
CTAGCAACCATTAAGAAAAGCAGGAGAGGAGTTTCCTACTTAGTTGTCAAAATTGGCTTG
AAGCTTGCGGAGAAGAATAGCCATGTTGTACATGAACATTAGGTCATTGGGTGCATGAAA
ACTTGGTTCGCTGTGCTGGAAATACAAAGTTACAAACGCAGTAGATTGAGAAAGAATAGC
CAGGTTTACAGTGTGATATGGAAATTTGGTTGGGTGTGCTGGAAATACAAACCAACTACA
TTATCTTTATTAGTATCAGGGGAATGTGGAGCACTTTGTATCTTGCCAAAAGTTGCTCTG
CAAAGTCTTTTACCCAATCACTGCATTCTCTGAATTTGCTGTGTTCGCATTTTCACCTGT
GTGTTAGAAAAACGATCCCTGCTGTAGCTGATTATTCTATCCCAAGTCAAGTTTGGGTTT
ACCTTCAAAATTCCAGTGTTACATTTTGATGCTACTTTATTATTTTCATGTGCAGGAGGC
GACTGTTCAACATGATAAACAACTTGCCCACTATATACGAGGTAGTGACAGGAATTGCCA
AGAAGCAGTCAAAGGAGAAGACTCCGAACAGCAGTAGCAAGAGCAGCAAGCCCAGTATGA
AAGTGGTAAGTGCAACATCGCCTTTTTTGTTGCTGCCATGGATGATGGTGTTGTGGAATC
GCCGCTGATCCAGTCTTGCTTATGCTTGCTGGGTGCAGCTGTCGAGAGCCGAGCCCCGTG
CAAAGGCGAAGGTGCCGGCCCCCAAGGACGAGGAGGAGAGCGGCGAGGACGAGGGCGACG
ACGAGGAGGAGGAGCACGACAACACTCTTTGCGGGACTTGCGGCACCAATGACGGCAAGG
ACGAGTTCTGGATCTGCTGCGACAACTGCGAGAAGTGGTACCACGGCAAGTGCGTCAAGA
TCACGCCCGCCCGGGCGGAGCACATCAAGCACTACCGGTGCCCGGAGTGCACCAACGGCG
GCTCCAACAGCAACAAGAGGGTCAAGACATGAGCGGGGTGGGCGCCGGGGGGAAAGCTGC
GCTTGCTGCGAGGAAAACCAAGCATCTTCGCTCAGCCTCTAGATATCATTTATTCATGGC
TTAGTTTCCTTCCTACTAGTCTGTAAGCGTGCTTCATCATGTTTTAAGAAAAACCTTGAG
ATTTTCGTGTGTGTGTTGACATCAACCAGCCTTTGTTAATTTCTAGCCTGTAAACTTTGT
CGACTGCCAACTGACCATTTCTTCTTCATTATTCGTGGATCCTTTGTAGTTCCTGACTCT
GTTGCCATCATTCGTACTGGAATTTGTGCTGATCCTCGGTTGCTTGAAGCTGTCTTTCTC
AGTTAATGGAACACATGTTTTTGACCACTAGCAAAAGGACCCGTGCGTTGCAACGGGAGA
AGAACAATTATAATCTCCAATGGTGCTGATCATATTATGTCTTTAAAATTTTAGGACATT
TCTGGAAATGCATGAACATTTTTTGAATTAGCAAACATTTTTTTCAATTGCACAAAAAAA
ATAATACACGAACTTTTTTTCAAAATCCTGGACTTTTATTGTTTTCACCAACACTGTTCT
CAAAATTATGAACATATTTTTGAATATGCGAATATTTTTACAAAAATCCTGAG