Contig Data
morexGenes
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Map Locations of contig_54271 (5670 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54271

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68145 9 3691 bp MLOC_68145.2 Available Available LOC_Os02g04490.1, FRAME:-3, EVALUE:2e-46, 13102.m00470 protein histone acetyltransferase HAC1, putative, expressed
MLOC_68142 2 1218 bp MLOC_68142.1 Available Available LOC_Os05g18470.1, FRAME:+3, EVALUE:3e-116, 13105.m01949 protein CRAL/TRIO domain containing protein, expressed





CDS Structure of MLOC_68145






CDS Structure of MLOC_68142






Contig Sequence (5670 bp)

>contig_54271 5670 assembly3_WGSMorex_rbca.fasta
CCCGCCGGTGCCGACGAGCGGCCGTGCGCGCCGCGACGAGATCGAGAGCCGCCGCCGCTT
CCTCCCCGACGGACAGAAGCAGACATGAACAAACCCATTACCGTTCTAAACGAATAAAAT
CCGGTCAAAGCAAATGTCGTTTGGAGTTGAGGGGTGTAGTTGTGCTTAGATCAGACGACT
ACTAGCTAGTGCTTGCTCGCTCGGCGTGTCTTCCAATTGAATGCTCACCAGCCAACTGCC
TGTGGAACTGGCGTGAGCTTTGAATGCCACCAACAGACGTGATGCCATTGCATTGCCCGA
TCGTTGGCGCGAACAGGACGAACGTGTCGCCACTCTACGGCAGTGGCAGTAGCAGTAGTA
GTACGTGGGTCGGTCGTGGCTGTCCATGATGCCATTATGGCAGCAGCGGCAAGCCACCAC
GCTCGCACACACCAACTACCCCTGCCTGTCATGTTCGATCTCGTCCAACGATATATAATG
CGGGCGGGTGGGTCCTTGTGGATCATGCTTCAGAGCACTGCAGTGTCAGTGTGGTTGTAG
GCAACTCTGACTGAAGCAATGAGTTACAAGCTGGAGAAGAAGAGCAGCAGCGAAGAAGCC
GCGCAGCTGAAACCAGCGTCCTCTTGGGAAGAAGAGCAGCAGGAAAAGGTAATTATTAAC
AGCTCTTCTCTCTGTCTGAATTCCTCCCTGCTGTCTGCCTTCAATCCAATCTATTAGTCC
CAGCTTTTGTGGATGGAACTGTAGTACAATTATATCATCGTATGCACTCGATCTGTCGTT
CGTGGAACATATAATGGACCCTGCAAATCCATGCGGATCTTCAAGTGACCTCGAGCTCGA
TCGAATTCGTTACCAGAACATGTGACAGAATCGTGTTCAATCACTTCTGAAGAAAACATG
GATGTAGATACACCCACTGATTTTGGAAAGTAATTTATTATTTTTTTGCGGGGTTTTTGG
AAAGCAATTAACTGTACTAGTAACTGTTCACAGCAAGAGATTAGCTACCAGTAGTGACTT
TGTATCTTGATTTGCACGAATACATGCAGATAAATGAGGTGCGCGGTCTCCTGGGCAGTC
TGACGGAGGAGATGCCGAGTTTTCTGACCGACGCCACCATCCGCCGTTTCCTCCGGGCGA
GGAACTGGAGCACGGAGCAAGCAACCAAGGGTCTCAAGGAGACTGTCAAGTGGAGGCGTG
AGTACAGGCCGGATGCAATTTCCTGGGTAAGTAAGTAAAGATCCTAGCCTTATGGATCAC
TCTGTCTCTAAGTACCTGCTTATAGCTTCAATGAATTGTGTAAACAACGTACTCTTGTCT
GCTGCGAACAAATTAAATGGCAGGAAGACGTTGCAGAAATGGAGAACGAGGCCCGGAGGA
CACATGTGGCCGACTACCTTGACAAGAACGGAAGAAGTGTCCTCGTAGCAAACGTTCCAA
TGAAAGTAATTATTCTTTAGCCGATGTTTTTGGTAACTAATAGTAGTAGCAGGAGTCGAA
CGTCAACAAACAAGAGGCTCACCTGTACAAACAGTCTAAAGTTTCAGGCAAGGAGCAGAT
AAAGCACCTGGTGTATCTCCTAGAGTATTTCGCCACCAACTCAGCGGATGAACAAGACGG
CTTCGTCGTTTGGCTGACCGACTTCCGAGGCTGGTCGATATCGAGCACGCCGCTGTCGAC
GACCCGCGAATCCATGCACATCATTCAAAACCATTACCCGGGGGTGATAGCCGTGGCGAT
CCCTTTCGATCCTCCCAGGATTTTTGAGTCCTTTTGGAAGGTATGTATATGCAAACATTC
TAACCTATGATTTGTGGTGGTTCCGGTTTTACTTATCACTGAATATCTGAACCTGATTTT
ATCGACTCTGCCCTCTGTTTGATTTGCAGATAGCAAAGAACTTCGTGCAGCCATACATGA
AAGAGAAAGTGAAGTTTGTGTATCCTAACAAGCCGGAGAGCCTGCAGATTATGGCTGACA
TCTTTGACTTGGATACGCTCGAGTCTTCATTTGGAGGAAGAAGCACCAGCACGGCCTTCG
ACATCGACAAGTACGCCGAGAGAATGAGAAGAGCCGATAAGATGAGAGGAGCATCATCAA
AAGATATAAATGGCTACACCTGATCTCGATCGCTGACCAATCACTTTTTTTTTCTGGAAA
GGGTGGAATGCCCCCGACCTCGGCATCAAAAGGATGCATGCAATCATCTTATTAAATAAG
GTACAAATACAAAGTCTTAGATCCAAAACAGACTCATAAAATGAGGGTCACATTCAGCGA
TAAAAAACAGGGTACGATACCTAAACATTTTTCCTATTAACTATTAGCTCGTCTTTTAAA
TTGGGTGAAGATAACCCGTGCTACCGTCTTTCAACGGTTGCATCCAATAAACAAAAGCTC
CTTGAAATCCGCATGGATAAGTAACGATCACGTACGGATCCAAGATGACTCTGTAGATAA
CCGGTAAAAAATTAGTAAAGTTTTTCCCATTAAATATATAATCAGTTCTAGTGTTTCATA
TAGCACGAAATAGTGCACATATCACCATCAAAATATGTTTTATTATAGTTGTGTTCACTC
CACTAAGCCACGTCTCAAATAACGTGTTAATGCTCGTTGGAATTAATGTTAAAAGCTATA
TGCAGGGATCGTCATGATAATTTTGCTAATGGACAATCGAAAAAGAGGTGTCTTATCATT
TCATCCTTATCACAATAGAAATATCTGATACTGCCAACCCATTTTCTCTTTATCAAATTA
TCCTTGGTCACTACAACTCCCTTGTATACAAACCACATAAATTTGTTAATTCTAAGAGGA
ACTTTAATCTTACAGATATGCAATGATCTCGGGAGTAGCCCAGAATCAATTAAGTCCAAA
TACATAGATTTTATCGAAAAGGTATCATTCGTAGATAATTTCCAATGAATTGTATCAGGT
TGGTCAGACCAACAACCAGGAGTTCTAACATTCTCCCACTAGGGGCCTCCTCAATTGGAT
ATTAAGAGGTACCAAATGTAAAACAATAGGGACATATTCTTCTTTACGTTGCAAAATATT
ATATAGAAAGGGATATTGCAAAGCCAAGGGCGTCTCCCATAGCCATGTATCCTCCCAGAA
TCTAGTCGTGGTACCATTACCAACTATAAACTTCACCCGTTGAAAAAAGGTTACATTCAT
CTTCATTAACCCCTTTCAAAAAGGTGAGTCCTTAGGCTTAGCGGTAACCTGGGCCAATGT
CTTTGAATGTAAGTACTTATTCCGCAAGATTTGTACCCACATACCATCAGTCTCAACAGA
TAACCTGTATGGTCATTTGCTAAGCAAGCATCCATCTAACTTCTAAATTCTTGATCTCTA
ACCCACCTTGGTCCTTGGGTCTGCAAATAATATCCCATCTGGCCAATATGTATTTATTCT
TAGCATCATCACATTGCCAGAACAATCAGGATCGATAAAAGTCTAGTCTTTTTCGTACCC
CTACCGACACTTCAAATAAAGATAAAAGAAACATCGACAGACTCCGCAAAACCGAATTTA
TCAATACTAGCCAACCTCCGTAAGACATGAGCTTGCCCTTCCAGGAGTTTAGTCTTTTTT
CAAATCTATCTTCAATACATTTGCATTCCTTATTCATCAATCACCTATGGTGAATTGGAA
CCCCTAGGTAGCTGAACCGTAAGGATCTCATTTCACATCCGAACAATTATCTGTAAGCAT
CTTGTTCCTCTTTCGCTCTCCCAAAGCAGAAAATTCGTTTTTGTTAAAAATTGAATTTTA
GTCCAGACAATTGCTCAAATAAACAAAGAACAAGCTTCATATTCCTAGCTTTTATGAGAC
AATGTTCCATGAAAATAATTATGTCATCCGCGTATTGTAGTATGGACACTCCCCCCTCGA
CAAGGTGCGGGACAAGTCCTCCTACTTGGCCAATCTCTTCAACCCAACCAATAAGGACTG
CCAACGTATCCTCTACTATGTTGAACAACACATAAGACATGGAATTTCCATATCATAACC
CCTTATGCCTCTGGAAACAATGACATGTGTCATCATTAACTTTTATCCCAGCACTACCTT
TCTGGATGAAGGAGTCCACTTTGTTTGCTCCAGGATTCGTTGAACCACTTTATACGTAAG
GCTTGTTTGCGAAAGGGCCATTTGACCTTATCACACGCTTTCTCGAAATCCACTTTGAAG
ATAACCCCATCTAGTTTCTTTGTATGGATTTCGTGGAGAGTTTCATGTAGGACAACAACC
CCATCTAGGATATGTCTCCCTGGCATGAAAGTTGTCTGAGTTGGTTAAACTACCGAATGA
GCTATCCGCGTCAACTATTCATGCCAACCTTGGTGAAAATTTTGAAGCTAACATTGAGTA
GACATATAGGCCTGAACCACTCAATACGTACACCTTCCATCTTCTTTGGCAACAACGTTG
TTGTTCCAAAGTTCAGGTGAAACAAGTGTAGGTGTCCGTTAAACAAGTCATGGAACATAG
GCATAAGATCTCCCTTTATAATATGCCAACAGTTTTTGTAGAATTCTGCTAGGAACACAT
CTAGTCCAAGGGCCTTATTCTATTTCATTTGTGCTATTGCGTCAAACACTTCTTTCTCAG
TGAAAGGAGCATACAACACCCCATTCTCGTCAACGTTGAGCTGAGGTATGTTCCCGATTG
CGCTCTTATCTAATGACACAAAATTTTCTTTGGGTGTTCCAAATACCTTCTTATAACAAT
TGGAGATGTACAATTTTAGTTTTTCACTGTTTGGGAACATCGCATGGGAANNNNNNNNNN
NCCTACGCTCACCAAGATCAGTCTATGAAGACTAACATCTATGAGAGGGGGGGGGGTGCA
TCTATATACCTTTGTAGATCCTTAAGCGGAAACGTATATAACGCGGTTGATGTAGTCGTA
CGTCTTCACGATTCAATTGCGACCCGTCCCAATCTAGCACCGAACGAAGGCCACCTAAGC
GCACACGTACGCCTCGATGACGTCTTCGCCTTGTTGATCCAGCAAGACGGGCGAAGTAGT
AGATGAGTTCCAGCAGCATGACGGCGTGCTGTCGGTAGTGGTGAAACTATTTCCACAGGG
CTTCGCCAATCACAACGTAATTAGAGCGGAGGATGAACTAGAGGAAGGAGATGAGAACCA
TAGTAGGCTTCAAATTATGAGGATTAGAGGTAGCTAGGGCTAGCTCTAATTAGTCAACTA
GGACCAACTAGAGGAGGATGTAAAACTTGTGTTCTAGGGCTAGCTTTGCTCCTCTATTTA
TATGTTGAGCCCTGGGGTCATAACTTTGGGAGATGGCCTCCCCAAAGTCGATTTGGAACG
TACGGAAGAGTCCTTCCTAGATTCCCGCACCAAACGCCACGGTCTTCGGCGCCTAGGGAC
AGACACCAGGGCTCGTGGCGTCTGGTACCTGACCTCCGCAAAACTTACTTTTGCATCGAC
CTAAAGCCCCGTGGGAGTTACCCCTTGGCCCAACCAAAGTATCCTCGCACCAGAACATTT
CCTAAAACATCCAAAACTCTTTCGGTGAATTATGGAACTCCTCGTTATGTCCATGATCTC
ATCAGGGACTCCGAATCAACATTCAGTCACCAACATACATAACGCATATAATACTATACC
GTCGATGAACGTTAAGTGTGTAGACCCTGC