morexGenes - Barley RNA-seq Database

Contig contig_54180
Source Contig contig_54180
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54180 (6740 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_54180

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68098	1	1110 bp	MLOC_68098.1	Available	Available	None
MLOC_68097	1	2404 bp	MLOC_68097.1	Available	Available	None
MLOC_68099	1	621 bp	MLOC_68099.1	Available	Available	None
CDS Structure of MLOC_68098

CDS Structure of MLOC_68097

CDS Structure of MLOC_68099

Contig Sequence (6740 bp)

>contig_54180 6740 assembly3_WGSMorex_rbca.fasta
ATCTCGATGTCATTGTCATTTGGTAAACATCCTTTGTAGAATAATTCTATCTCTTCCACA
CTTAGTACAACGGGACCATCTTCAAGAATCCAATTTTCATCAAACTTGCCAATATCCTCC
AAACTAATTGGGTCATAGTTTCTAGTTTGGTACATACACCTAAACATGCAATGAAATTAT
AAACCATACAACACACAAATAAAAAGAATAACTAAAGGAGTAGGGATAATATAAAGAGAG
CACCTTTTCTCCAGCCTTGAGTTGTAGTGCACATAAGCAATATCATTCATACTTTGATGC
TCAAGTCTATTTCTTTTTTTGGAGTGAATATTCTCAAATAGACTCCAATTTATCTCACAA
CCCGAAGCACTACAAGTTTGGCTCAAGACACGAATTGCAAACTTTTGCAGGTGTGGAGTA
CTACAACCATAATTCAACCACCATTCATCTAGAGAAAGGAAAGCATATGCATATTTCAAA
ATCACTTAAGGCTGAAATTGGAAAATGGAATGCATTAGACATACCAGGAAGCATTGTAGC
TCAGTCACTAATGGTTGTCACTCTTCCAAAATCATCTTCGGCACCTCTGAAAATCTTTAT
CTCTCGTGTCAAAGCTTTGCGCAAATCTGGATCATTTGATGCATACCTCTCAATAACATC
TATAACTCCGGAGGTAGTGGTGTGATACTTTGACATAAGCTCTTCATAATATTGGTTGAT
CGGATTAAACCAAAATCCAACTGCATGCAGATTTTCATTCAAGTGCTTTTCCCACGTCTC
CTCTATAATTTTAGGAACGGGTTGTTGAATGTCTCTTTTCTTTCTTTGAAACCTCTTCTC
AATCTCCTCAATTGCAGATGTAATGCTCCAAATAGATACCCCATTGCTGGCCTTTCATCA
CTATCAACAATTCTTAGCACACGAACTAAAGGTTCCGAGAATTGGCGAACCAAAGCACAA
TCTTTCCAAAAATGTTGGTCAAGTACATAATCAATATTTTTTTTTTGCTTTTGACTCCTT
TGAATTTGGGGCCGATTTCCACTCTTTTGAAATAACCATAGCACAAAGAGCATCTTTTTT
GCTTATAGATACTTTGCAATGCAACAAAATTAGTAGCAAATTGAGTTGGTAATGGACGAA
GTATCTCTCTTCCATTAGTGAACTTTCTCATAAGGTAAAGTGGAAAGCAATGATTATACA
AATATTTGTTGATTTTAGTTGCATAGTCTACAACTGATTGCACTATTGGCAGTTTTCCCA
AGTCAGTTGTGATAAAATTCAAGCAATGGACCGCACATGGAGACTAATAAAGTGAAGGAA
ATTCAGCCTCTAACTTGTTTCCAGCTAAAACCATGTTCGAGGCATTATTTGTGACAAAGT
GGACCACATTCTCTACCGCAATAGAACGGACCACATCGCTGAACAGTTTGAACAAGAAAT
CACCGGTTTTGGAACTAGCAGTGGCATCAACCGATTTGAGGAAGACCATACCTTATGGAC
GATAGACCAAAAAGTTTATGCGTGTTCTTTTCTTCCTGTCAGTCCACCCATCAGCCATAA
CAGTGCAACCACTCTGCTTCCATGCTTTGCGGTAGCTTTCCGAAAACTTCTTTGTATTCT
CCACATTTTTGGCTAGCAAAGGGCCTCACATTTTGTACATACTTGGCCCTTTGTAACCAG
AACCAACACCAGCAATTGCATCAATCATGGTCTGATAAAATCTAGATGTTGTTGCATTGA
AAGGAATGGATGCATCAATAAACCATTTGTTTATAATCAAGTCAACTCTCTCTAATGCTT
CCTGAGATTGAATAACACTCTTCAATGTTGGTTGATCACCTGGAAAGGTTCTAGACATGA
AGAATCTGTCCGATCCTTTGCTTTTGGTAGGAACACTAACAACCGATTGATTTGCTTTGC
CTCTTTTTGCTCTACTAGCAACATCTTCAGCTGAAACTTCCACGCGATCGTCCAATATGC
GAACAGCAACATCTTGTGACTTCCTTTTCTTCTCCTCAAATGTTGCAATGCTTTGCTTCA
TTTGACTTCTAACCTCTTCAGGAACCTTCATGCATATCTTTGCATCACCTTTTTCTTCGG
CTAAATGTCGCTTGAAACGATGAATACCAACGCCTTTGAACATGTCATTGCAATACAAAC
AACGGATCATCCTCTTATTTGCTTCGTCAAGAACTTCAACACAATGTGCCCATGATGGAT
CAGTTTTTGCTTTGCTTCTTGACTTTGGTTGTGCCTGTAAAGATTGCTCCTCAAATGATG
AGTTGTCAGTGCCGCCATCAGTTCCTCTCATGGGCGTCTCTCAAGAACCCATCCTACTAA
TGGAATCCTACAATGGACAAATTAATGCACAACAATATCAAACCAATATACAAAATACAA
TCCCACTGCAATTATTTATCCTCGAAATGAAGAATATCAAACCAATATACAATCCCATTC
GGGAGATTTTTCTTACCAGAGTTGTCGTGGAGACCTGGACGTGGCTGGAACTGGATGTGG
ATGGACCTCGGCTCCTCGTGCAGATGCAGAACGAGATGGAGAGCCAGCGTGCTGAACTGC
TGATGCAGATGCTGATGTTGCGGCCTGGCTAGGAGACTGCGAGAGGCTGGTGGCGGACCG
GAGTGGTGGGCTGGTGGCGCGACTGGCCGCTGGCGACGAGGAGAGGTGGTGTGGTGGACT
GGTGGTGCAGCGGCGGGGCAGCGGAGGTGGCAGCGGAGGGGGGGCGGGCCGATGGCGCCA
GGCCAGAGCAGAGCGGTGGTGCCATGGTGACCGTGGCGGCTGCCCTTTGGCCTCTGGAGA
AATTGAGGGAAACCCTCACGATTGAGTCGAAACCCTACCAAAATAGTGATTTTTTTACCT
TTCTAATTCTACCCCTTCTTTCTCTACACGAAAACAAGTGGATCCGGGGGCTTTTCGGGA
ATCAACATCGAACCGCCTGGTTTTCTGTAAACCGCCCGGTTCATAGGTTTCACAAAAAAC
CGGCCGGTTCACACAGTTTTTGCCATTTCGATTGCTTGAACGGTCTGCTGGGCTTAAAAA
CCCGATTTGATCTCCGGTTCCGGGTTTTTCCGGTCTAACCGCCGGTCAGATCCGGTTTTT
TAAACTATGCGAGGGAGGCGCTCTATATGCTAGGGTTAAACCCTAGCCAGCACGGCCTTG
TCAATGTCGTCGTGGCTAGCATGAAATGTGTGATGATATTTTTTAAAGCCGGCATTGTAT
GCTGGTGTTGGCATTGTGCTGGCATGATATATGGCCGCGGACCTTTTTTAAAAATTGTGT
GTGGACATGAAATGGCTCGGCGCGTTGGACGCACTGCCGAGCCAAATCTAAAACAGAGCC
GACGCCGAACGGGCTCGCGACCCAAACGGACAAAAAGAGAACAAAAACGCCGTTCGTTTG
GATCGGTCCGTTGGAGTTGCTCTTAGGCATGAATACGCGCAGGGTGGGGGGCTAGGTTAA
TAGTTGTGCCCTGCGTTGATTTGCTAGCCCAACACCTCTCAAATAACATGTGGCTACAGT
ATTGCTAACAGGCACGCGTTAAAATTATCCTCGATAGTTGCATATGCTCTCTTCGTTTTC
CCCTGCAAGGGGGTCTACAAAGGAGAAGGAATCAGGTGGAGTGGGGAAGTTGTTGTTGCT
AAAATGACACTGTTTTGCAAAGAGGGTATCGGGAAAATCTATGGGGATATATCAACATGA
GAATCCACATAGATTGGGGAGGGAAAGGAGTGCTTGGGTGTGTTTCTTGAGGAGTAAAAA
TCCAAAAGGAGGGAGAAACTCGTCGCGAGCTCAGGATGAACCTAAAGTAGAATTTTAGAT
ATGGTGGCCTCAAGCTCACGCTTGCATGTTGAATAGTCTTGTCACAAGACATCTCGCTCT
TGCATGCTCATGGCTTTGCTCGTGAATCATTCCATTGTGAACCAATTATGTCCCGCAAAG
ATAGTTTAGCATGCTTGTGATCCGTCGCGCCATGTGGCAATGAACCTACGATCATGCCAT
ATTTGCGTCATAACATACCTGCTTGAAACACACTAACTAAAAATGTAGGATTGCAAAAAT
CACATGACTTTTTATGCCATTTAATTTGTTGAATAATAAATGTTGTTCAATATGAACTCT
CGCAAAAAACAAAAACATAAATAAATAAAAAGTGCTATATGATACCACATATGAAATACG
GAGTATATAGGAATTCAAGACACAAGTAGAAAAAAGACATAAGGTAAGACTCCATCTGTA
ATTTCCACCAAACTTCCTAGGGGTTGCCCAATTCATAAATAATCCGTTGAGCCATTTCTT
TATTCCAAATGATACGGTAGGAATTGTATGGGAATACAGTTCTCCAAATTCTCAACCTTT
TCATTTTTTTCAAACTAAGGTATAGAAGTTGGATAGAAAAACATTTTAACTGTTCAAAAG
GATAGCATTACATTTACTTCATGAATATCCATTGCCTTAAAAAATGTGTGTATTGATATA
TTTTGACAAAAGGACAAAGTCCATGTATCAAGTAGCACATATCCCTACAAAAGCACCATT
ACACAAGTAAAAAAAATGGATTCGTAAGGATGTTGAAGTCTTGTTCCTCATGCATCCATC
GAGGACGTGTCATGAGCAAAGATCGTTGGCACCTTCGGGCCTGTGTCTTAGTGGAGTCAA
CTCGTTAAAATCCACGCCCTTCCAAAATGAAGGGCGGTGCTCTGCGTCGGCGTGCTGGTC
AAAACTTTCGCCCGGCCGCGCGTGGGCCATCCGATACGCCAGCTGCACGCGGACCGCACC
GTTATATCTTCATGCAGCAAAAAAAATTGATACAACAAATTTTATCCACGATGCAGCAAT
TTTCGTCCACGGTTGCAACAAAAATATAGTTGTAGCAGAAAAATATCAACGTGGTCGTAA
CAAAAAGCGAAGCTGATGATGCGTGGTAGGAAAACAATATAAGGGTTGTAGCAAAACAAT
CCGGTAAACTCATGTTGCAACTCTGACGAACGTGTATGCAACTTTTTTGGTGAATGGTTG
CAGCAAAAACTGATATCGGTTGTAGCAAAAATTAACACGGTTGTAGCAAAAAAAACACCG
GTTGTAGCGAAAAATCCGACGAACTGAGGTTGCAACTAAACGTATATACAGCTTTTTAAT
GGACAAATGTAGCAAATTTAAACACCGGTTGTAGCAAATTTAAACGATCACCACAGGGAA
AAATGTTGCATGGCCATATGCGCGGGTCGCGCGCGAGGCGCGTGGGCAGCAATCGACCGG
CGCGTTGCTTCCGTCGGCGCGCCGAAGGGAAACGTTTCCCTAAAATGAATGGCAGGGAAT
TCATCAATGTAGACTAGAAGATGCCGACGTCAGCAATCTGCATAGTGAATTGTCGTCCCT
AAAAAGAAAACACCGGAGAGGACATGTAGAACAGACCACACACGTCCACATAAAGTTTTT
TTTTGAATGTCGGCAGTAGAACTGCCACATTCATTGCTCAGAAGAAGGTGTTACAAGAGC
CCTCCAAGGAGGAAAGCACCGGAAAAGGCGGCGCAAGAAGAAAAGAAAGAAAAAGAACCC
GTCGACAGCACCACAAACCCACACTCTACCCACAATCGAGAACACCACGATAGCCCATCG
TTGAGATCTCCAAGGCGATGCCTCCAAGGAGGAAAATGGTGTTGAAGACACTGTCGTCAC
CCGATCTGGCACTGCCTTATCTTAGGTTGTCACCCGAAGATCTCACGCTAGTTGGTAGGA
AGAGGCGACGACTCCACAACGATGCCTTCAAGGAGGGAGACGACACCCGTGGGTGCCGTT
ACCGCCGGCAACAACCAAGTCGATGCATGATTTTCATCCGGAGTCAGGACTTCCACCAAC
AATCCAGGGGTCTGAGGCCACCAACAAGAGGTAGCGGCACAAGCCCATGCAAACACTACC
AAGGACGACATGGTCAAAGCCGCTCGTAGAAAACTCGGCGAGCATGCACCAACCTGGCTC
GTCTGCACTGTCGCTCGCAGAACATGGGCGAGCCAAGTCGGATTAGGCTCTCTTCTACCT
CCATGCGCAGAATTGGGCGATCCTTCGCACTACAGCGCACAGGAAAGGTCGAAGAAGAGC
TAGACATAGCCGGTCCGCACCGCCGCGTGCAGGAACTAAGCGGGATCCAGCCAAACTCCG
CAGCTTTTGCTGCTGCGCGCAAGCACAAGACCACTCGTGCTGGAACTGGTCTGTCGAGCC
TCCTGCCACACCTGACAAACTGGACGGCGCCACAGCTCCAGGAGCCGGACGTGGACGCGC
TTGAAGGAGAGACACCACCATCAATCCCCGACACCACCACTACATCCACCACACGGAAAA
GGCAGCCGCACGAGGCGCGCAACGCAGCCATGGTTCCATGGCGCCTGAAGCCACCTTGCG
CCATGCACTACGCCACAAACTGGCAGAGGCCAGATCTGGCCCGACCACCTGCAGTGCCCA
GCCTCCCCATGACACGTGAACGACCAGCAGCCGCCAGCCTAAGCTAGCCGCAACGCGCCC
CCGACACGGGATCTCAGTCCCGCCAAATCCGCCGCACTCCCCAGCACTGCAATCATCACC
CCGGGTCGCCGCCTCGGCTTCCTCCGCCGCCTCTTGCAGCCATGACAGGCCCCGCCATGC
CCCCGTGGAGTGGCGCCCGGCTGAGCACCACGTCCAGCCGAGCACGCCCAGCCACGGCCA
GCCACCACCATGCACCCGCA