morexGenes - Barley RNA-seq Database

Contig contig_54117
Source Contig contig_54117
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54117 (6438 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_54117

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68056	2	2269 bp	MLOC_68056.2	Available	Available	LOC_Os09g38620.1, FRAME:-3, EVALUE:0.0, 13109.m03850 protein NADPH reductase, putative, expressed
MLOC_68057	1	139 bp	None	Available	Available	None
CDS Structure of MLOC_68056

CDS Structure of MLOC_68057

Contig Sequence (6438 bp)

>contig_54117 6438 assembly3_WGSMorex_rbca.fasta
TTTCACTAGATGTCTACATACGAAGCAAAATGAATGAATCTATACTCTTAAGTATGTCTA
TATACATCTGTATATAGTCCATTAGTGAAACCTCTACAAAGACTTATATTTAGAAACGGA
GGGAGTAGTTAGGAAGCACTTATTTGGAAGGCTCCCAACGATCGCTCCCACACTCCGCCA
CTTGACACGTTTTCAGCCATCGTGATGTGTCGCGTTTTGAGTGTTTCCTTTGAATTTTAT
TTTTTGTTACTTTTCGCACACGTTTTTGGTTTGTTAGATTGGTTTTTTTATGGGGGGTTG
GTGTTCCGATTTGTCACGTGTCTTTCTTAGTTTTTCGACAAAGAATTTCAAGAAAATTGT
ACAAAAAGGAACACGTTTTCTGGGTTTTATTTTCAAAAGGCATGGTTTTGCTTTCGCGAT
AAGCATAATTTTGCTTCCGCAAGAGGCGCGGTTTTGCTCTCGCGAGAGGTATGACCGTGT
CTCTCGAAAACGGGAAAAAATGTGTTTTTTGTTGTGTTTTTTACGAGAGGCACAATTTTG
CTTTCTTGGGGGACACAGTTTTGCTTTCGCAATAGGCACGCCGTGCCTCTCGTAAATGGA
AAAAAAATGTATTATTTATTTATTTTTCTTTTGCGAGAGCCACGGATTTTTTTCCATGAA
CGTGCCTCTCAAAAACAGAAAAAAAAATGTTTTTTCGTTTTTTTCGTAAGAGGCACGATT
TTATCTTCATGAAAGGCATAGTCATGCCTCTTGGAAAATGAAATAACGTGTTTTCTTTAT
TTTTCTATCACGAAAGAGGTACGGGTTTTTTATAAAAAGCAAATTCGTCAAAACCTATCA
ACATGGGATCTAGTTCTAAAGATCTCGACGTTCGTATTTGGATCGTCAAAGTTTACTCTA
CCCACGATCTCATCGAAAGAAAGGGACAACTTCGCCTCTATCAACGGGGAACCCAACAAT
GAAAACGTTCGAGATTTGGATGCACGGTTTAAGAGATAAAACGTTTTGAAAAATTACGGA
TCTACGAAAAAAGAGAAAACTCCAAAGTTACGACAAGTGACACACATGCAGTGCGTCACT
TGTCACAACCTGAAAAGGTGTACGATCTTTTAAAAGAGTACTCTTTAATTAATAGTTTCA
ACAATGTACTCTTTAATTAGTGATTTCGACACAATGTATAGGTGGCTTCTAAATTTTCTC
AAAAGGTGGGTTTTAAAAAACTTGATAATATAATTCATTTTTTTTTTGGCCTTTAATACA
CTGTTGGATTCAACTTAGTTATTCGACCATACGAATTCACAGCATATAAGTTTTTGACTT
GTGCACGGAATCTAACATACAACTGCTCAGGTGATCTTTGCTTATTTGGACGCTGAGGGA
GAACCGACTAGTAAGAGTATGTTTGGATGGTATCCAAAATGTACCCTACATTTTTAACAA
GGCGAGCAAGTATGCTTACAACTGTTGCTGCAAAGAGTAACATAACTGATTAAATTAGCT
GAGATGCGAATGGGCACCTTTATTTAGCTTTAATTTCAGACATCACAAACAATCGATGAA
TAATCATCCTCCGTTCATCAACAAATAATACTACATCCGTATCTGGCCGGGGCGTCCTAT
ACAACAACAAAAAATCCCACTACTACAACTACTATATAACGGCACCAATCATATTCGAAA
TCGAAGCCGCATTTCTCATGTTCGATCGACCATTTCTCTAGATTTCCTACGTTGTGTTGA
ATCATCCGTTCGTTTCCGCCGCAATTGTTACCAGACGTCTCTCAGGTATCTTCCTTCCGT
CTGAAGGTTTTTCACGTAACCCTCCGTCTTGGAGCTGTCCAGAGAGCCCTGCAATGAAAA
GCGAACGACTAGTCAGTTCAGGGAAACCAAACGGAACTTCCAGAGACCAAAATTGGATGT
GCGTTGCGTCACCTGTTCCTGAACTATGGTGTGCAGCGCGCGGTGCACGTCTCTCGCCAT
GCCCTTGGCATCGCCGCAGACATACACATAGCCACCCTGGGAAACTATGCTCCATAGATC
TGCAGCCTGCGAATATTGTTTACACGTGCATGGTTAAGCGAGGAAAACAAGGGATTAATT
GCACCTAATCAACGTCAGGACATCAATAAACAGTGAGTTATCAATCAGGTTATTACCTTC
TCTGCCATTTTGTGTTGGACGTACTCTTTTGTAGGACCCTCACGAGAAAAGGCGACGACC
AACTCGGACAGGGCTCCAGATTCGGTAAAGTTGTTCAGCTCGTCCTCGTATATGAAGTCC
TGGAGAAATAAAATGTTAATCAGACAGTTTTCACATAAGTTAGGTAAGTGTTTTTGATCA
CCCATGAGATCCTCTACTAGATGTAAAATGCAAATGCAGAGAAGTTTTTTCTGACAGGCA
ACAAGGAGCTAAGAGGCGTAAAATGATATTTGGGAAGATATATGTAAGAATTTTAAATGC
CATATGAATTATAGAAGATGACACACGCATGCTGGTGCGGCTCACAAATCATGACAGTTT
CTTACAATAACCGTAGATGAAACTGAATAATCGAGATCATACCATCTGGCGGTTTCTGCA
CCCGAAGAACAGGATGGCACGGCCCAGTTCCACACCAGTCTCTTTTAAAGCTAATCTTTC
CTGCCAATGGCAAATGGATTCAATATACATATTAGCACGCTAAAGAGTGAAAAGCTTGAA
GAATACTGTGGGAGAAACAAGAAGGAAAAGACAAAACGAACCTGTAAGAAGCCCCTGAAA
GGTGCAAGGCCAGTCCCAGGGCCTACCATTATAATAGGCACTGTAGGATCAGCGGGCAAT
TTGAAGTTTGACTGCCTCACAAAAATTGGAGCCCAGCTACATTCTTCGCTCTCTTCCGAT
GGAGTTGAATTCTGTGTTTAGCCATGTAGGATCATCAGAACAAAGTGTTTACAAGATGAC
AAGATGGTCACTGGCAGATATTTCAAATGATTATTGAACAACTTGGCTACATAGTACTTA
CAAATCATTATTATTGTTTTAAAATGATTGCACTCACATCTCAAAGTACAAATAATTGTG
TGGCCACCGATATCATAGTCGATGGTCACTGGCAGATATTTTAAAGAGAGTAGTGCAAGG
TTACGTCATTGAATGCAATGAACTCTATGATACCATCCATCAAATTAATTTACACAGACA
CACAGGGGAAGATCACATCAAAAATGTTGAGAATGAGTAATAAAAGATGATTAGTCGTTC
ACCTAAACATACAGAGAAAGGCCAGTAGACAGAACTAGAAATTTCAGTCCAACATCATTA
AACCAGGGAAAATATGTGTGATTTAACGAGTTCTAGAGGGGTTGACTCGACATGTTCAGG
ATAGATAGAGCAAATGGGATTGAGTTCAAACATCAAAGTGAGCAATAGGGGACAAGTTCA
ATTATCTTGCCAAAGGTCAAAAAGTTTCCATGCTTGTAACTATGTTATAGAAATAAAGTT
CTGCCCTGTGACTATGAAGAGACAGGAGTATACCTTCATCCAAGTGGAACAAACTCCTTT
ATGGATCCTTCCAGTGGGGCTTTGCCCATGAACTAGTGAACATGTTACATGAATTCTTGT
TGGTGCCATTCTGCAATGATATGATATCGTGAATCTTGACTGACTAATCAATGTGCTTAT
GTTACATAGGGAACTAATTTCAAAGACAAGATACCTTGGTGAGGAAGATATTGAGTAGTA
TCTCGGCTGAAGGCGAGGAGCAATAGCTGCAAAGAAGACACCAAGCGGAGGTTTCGCTGA
TGGAAACTCCGAAATAACTTCCAAGAGACTTCTTTGACTAGCGATTATCCACTGAGAATA
TTCTTTCTGACCAATGAAATTCATGCGTGTGAGAAAGATGACACTATTATCGGAGAGTAT
GAACTTGCCCTAGATTACAAACAAACCTTTCCAGCAGGGGATGCTAGATGTCTTAGCCGC
TCGGCCTCTTTGGGATCAGATGCATGAGCAGCCAAAGCAAGTAAAACACTCTGCAGCAGC
CCATCAATAAAATGAAAATATTTATGGATACAAACATAGGATGCGGCGAGAGAACAAATA
CGCACAAAAAAAAGGGATATTCACCTTCTTAGGTGAATTCAACAGATCGGCATATCTGGC
AAGTGCAACCCTCACGGTACAGGGAGGGAAAGGAGGTGGCAAAGAGCCCCCAAAAAGTGG
AGTGCCATCCTCTTGGTCAGCATAAATTGAGAAATAAGTATCTGGCGAATAATCTAATAG
CTTTTCTGCCTCCTCTACAGTCTCGGTTGAATTTTCTGCGTACACACCAACATGATCTCC
AGTCTCATATCTGGAATGAAAAATGAGGAATAATCAGCTGTCTAACGAACAATCACATAA
ACTAGTTATTACCTCCTAAAACTGATAGAGCTACATTTTTCAGTATGCTTACGTGAGGCT
AGTTCCTGCAATATCAAACTCCAAATGAATGCAGGACCGGTCAGAAGCTGGTGTGTGAAG
CTCCCGTCGCACAGCCACATTTGCCCTGGAAAAGAAGTGTGGTCAGAGTTCGCTCATATA
GTAAAAAGAAAAGAAGTTTTGCACCCAGTCACATAAAAGCAAGAAGGGCATACCTGCAAG
GATGTTGACTGTCATAGACGACATGACCATTGCTAAGACTGAAAGACTTGTTGATATGTG
TGGCATCCTCTGGTTTGGTAAGCACAATTCTATATTGCGGAATAGCAGCTGTGTAAGGAG
ATTGTGCTGCTGAAGAATTATCTTCAACGCGGAGCAGTTTGTCCAATTCTGGCCACAGTA
GTTCCTTCCTGTAGCCGAACAAACAAACCGTTAGCGTTCGATTTGTAAGACTCTCAAGGT
CTAAAGTTGAGATCAAGATATGTGCAGAAACAGGACCACCATGCACAAAGCCGATAAAAT
GAAAGGCTACCAACTGTCCTGGTTTGAAAAGTTCAGATCGAGGTTAAGCTCATCGCAGTA
CATACCAGGCGTTGAAGTCATCCTCAATGCATTGATCGTCATCTCCAAGGCCAACAGGAA
CTATGCGCTTTCCACCTGGAGAAACATCACCGACAAAAGTTAGCCAGTAGCAGATGACAA
AGGGGACAACAAAACTAGAAAAAAACATGTAACGATGGAGTCATGTTCCAGAGGATTCAC
AACATCTAACTCAAAAACTAATTATACAGGGCAAAACCATTACAGGCCTATTTAGTTATA
TAATTTCTCAAAAGAACAGTGTGTCATAATATTTGAAATTTAGATGAACTGAGCAACGAT
AAATTGAATTGGTCATTCATTCTGCTTTTGCTTACCTTGTTCGGCAAGGAGCTGATCAAC
CTCCTTTCCGACCTTTAGTTGAGAAACATTTGAAAGCAAAAGAGCAGGTAAGTTTACAAG
TCACAAGTAAGAGTGCATATATGCAATCAGATGGATTTAGAGGGCAGGGGGGCAGACCTT
GTTGAAATGCTCGTACTGCCTATTCCCAAGAGCAAACACCCCGTACTGGAGGTTGCTCAA
CCACTCGCCCCTCTCGTTCCCCTGTAGTCCGACCAAACAAAGAAGCCATCAATACCAACC
ACGAGAAAAGCACGCTCAGAGCTGCACCCCCCAAAACTACTAGGTCGGTAATCAAACCTC
AGAGAACCATTTGTAGAATCTGGCAGCATTGTCGGTTGGCTCACCATCCCCGTACCTACA
ACAGCGACAACGACACCCATTAGCAGCAATTTAGCTGTTTAGATCAAAAAAAAAGGTTGC
CCCCAGGCCCCAGCTATAGTAAGTGCTGGTTTGATTAGCAATTGTCTCTGCATAAATAAA
TATTCATGAGGTCCTTGCTTAACAGGTGCAATAAGCAAGCAATCCGCTAGTGTTGTAATG
GATTCGGTAAGAGTTACGGATGGAAATTGGCAGCGGTGGTCCTTACGTTGCCAGGAAGAA
GAAGGCGATGTTCTCCTTCTTGAGCTTCTCCTCGTACTCCTCGTCCTCGGCGGCGTAGTC
GTCCTGTATCCCGACAAAATCAATCTTATCTTATGAGACGAGGGGTGGGGAGGAGGAGGA
GCTTTAATAAGAAGAAGAAGAAGAAGAAGTAGCGTCGGCGGCGGCGGCGAGGTTGTGAGA
TCGTACCAGATCGAGCACCTTGAAGACGGCCTTGTCGTACCGCGCCTTGGCTTCCTCCGC
GAGCGCCTGGCAGGAGCGGAGCAAGGAGTTCAGATTGTTGCACGGGTGGGGAGGAGGAAG
GGGGGCACGAGGGCAGAGAGAGCGCGGGGCGCGGAGACGAGGAGCGCGCGTACCTTGGCG
AAGCCCTCGGCGGTGCCGGTCTGGGTGCCGAAGAAGAGGGCGACCCGCTGGCGGCCGTCG
TCGGGGTCGGGCTCCTGGTCCTTCTTCGCGGCGAGGGGCTTGGCCGCGGCCGCCTGGCGG
GCGAGCGGCGCGGCGCCA