morexGenes - Barley RNA-seq Database

Contig contig_54104

Source Contig contig_54104

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_54104 (2541 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_54104

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68046	1	295 bp	MLOC_68046.1	Available	Available	None

CDS Structure of MLOC_68046

Contig Sequence (2541 bp)

>contig_54104 2541 assembly3_WGSMorex_rbca.fasta
CAAAGGGTGCAATCACCACCACAAACAGCCCTGCTGTGAAGAGCAAGTGAGAGGCAGTAG
CATACATATACAGTTCGCTTGTTCATGTGAGCTACCCATACTGAAATACTCGTGTTTTGG
TTAGTGTTGATGAACTGAGAAATACCATTTCGTTGTAACTTAAAATTTACCTTCTTCCCT
GGACAACCGCCCCGGTGGTTTTAGGGAATTTACATTTTTGCTTGTGTTGGAACAGTTGTA
ATGTCGGAATGGGATCACACCTTCAAATAGAATAAAGTTACTGGTTATGCCTATACATAG
TTTCTTTGGTTTGTACTATTATTTACTCTCTCCGTCCTAAAATAAGTGTTGAAGATTTTG
TACTAAACTAGTACTCCCTCCGTTCTTAAATATAAGTCTTTTAAAAGATTTCACTAGTGG
ACTACATACGAAACAAAATGAGTGAATGTACACTCTAAAGTATGTCTATATACATCCGTA
TGTAGTTTGTTAGTGGAACCTCTAAAAAGACTTNNNNTTAGGAACGGAGGGAGTATAACT
TTTATACTAGAGTATCAACACTTATTTTGAGACGGAGGGAGTACATTATACTTGAGGGAG
TACATTATACTTGAACACTCAAGTCTGTGGTTTCTGTACATATTGCATTACTTGTTTCTC
AGATTAATCCTTGAACAACCAAGAACATGAGCGGACACATTATGTCATACTCCCTCCGTT
TCTAAATATAAGTTTTTTTAGAGATTTCACTAATGACTAATGTATACTCTAAAGTATGTC
AATATATATTCGTATGTGGTCTGCTAGTGAAACCTTTAAAAAGACTTATATTTAAGAACG
GAGGAAATATAAAAGTGGCCTGCTAGTTAAAATCTGGAATAAAAAATCTTGAAGATTTGC
AATTGTTATTTTGTTTATTTATTTTTACTCATAACATGTTCATTCTGAACTCCACCTCCT
GGTTACATTCATCACGGGCGAATCCTCGGATCCAGGCACAGGTCTTAAACAGGAATTTAA
AGATAGCCACAAGTTGGCTACAACACAAGAGAAGAGAGAGGCCATACAAAGATCGCCAGC
ACGAGCGATTCCAGGTCGTTTGTCGGCCACAGCACGAGCACGAGCGCTTCCACGACTCGT
CCACAGCATGTAAACATCATCGCCAGCACCAGCGTCGAGGAGAAGTCTCTGCTTTTGGAT
GTGGGGGCTCGGAACTCGTCTGTGCTTTCCAGCTGGTGAATGAAGCAGTCCACCCTTGAT
GCCAGGCCTATGGGCAATGCCCGGCAATGAGGTGGATTTTTTTTTAAAAAAAAAAAAAAA
GGCAACGAGGTGGAAATCGTACGATTTTCTTAATGAGCAGATACTCCATAAGCACACATG
TGGAGAGCAGGTTTGGAAACGACTGCCAGAGCAGAGCAATAGGGTGGAAATCATGTCCAA
ACAGGACCATCTCCATCGCCAGACACAACAGCCCATCTAAGCACAAACAAACAAAGAGAG
CATCGCTTCTGAACCTTCACATGCTATGCTGAACTGTTGTTGCCGTTGAGTTTGAGAAAT
TTTGGCCAGTTCAGATGCAACGAGTGACCTCCAGCTTAAAAGAGCTGGACAAAAAGATCG
CCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATA
CTACAACGACTTTGTTGTTCAAGGGTAAAACATAGGTAAGTGAAGATTCAGATATCCAGT
TAGCTATGTAACATGACACACTTCCAATCGTCCTCTTGAGCAGACGACCATCGCTAGTTA
GTTCAGGACAGCCTCAGTTTCTACTTTCTAGGTACTATCCTACCATGGTGGTGTTGCCCT
GAGCACTGAGATGGACATCACCATGGAACCAGACGAGGAAAACCCCCTCCATGCTTACCC
ATCTGAATATTTTGTGTGGAACATGCAGTTGCTAAGAACTGTACCTCTGCTGGGGAAGCT
GCGAAGATGGCAGGGCAGGAACGAAACATGTTCAATCATTAATGCATCCATGGCGGAAGC
ACTGCCACTGCACAGGTCACAGCACTGCTGCCCTTGGTACTTTTCACGCTGCTAGCGCCA
TGACGTGACGACTGACGACTGGAGGAGGGCCTGCCGTATGCTGTAGCACCGGCAGCAAGC
AGCTGCAGCTGCGTTGGCGAGAGCGGAATATCGAATTGGACATGGACGACGCCGACAGAG
GGCAGACCATACGCGGCGGGGAGCACATGGTGGTGGCCGGCCACTTGAAAGCTCCACGGG
GCCTCATCCTCACGCCTGAAACCTGGCGCCTGATTGATATTTGACTGTTATGTTTGGTTC
GTATCCTCCGCTACAGCCAACGGGAAGCTATATACTCCCTTTATCCGGAAATACTTGTCA
TAACATCAAGGGCGTAACGCCCCTCCTCTCCCGTGTCGCCCTGCGTGCGATGGGGAGGGC
GACTGCACAACGCCCTCAGAAGGCCTCTCCTCCCCGCCCCCTTCCTCGATGCCGTCACAG
GGCGCGGCCGGGCAAAGCCTG