Contig Data
morexGenes
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Map Locations of contig_54097 (4156 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_54097

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68042 1 1949 bp MLOC_68042.1 Available Available LOC_Os01g24600.1, FRAME:+1, EVALUE:4e-156, 13101.m02600 protein fruit bromelain precursor, putative, expressed
MLOC_68043 1 307 bp MLOC_68043.1 Available Available None





CDS Structure of MLOC_68042






CDS Structure of MLOC_68043






Contig Sequence (4156 bp)

>contig_54097 4156 assembly3_WGSMorex_rbca.fasta
ATTTCATTAGAAGTCTACATACGGAGTAAAATGAATGAATCTACACTNNNNNNNNNNNNN
NNATACATCCGTATGTAGTTCACTAATGAAACATCTTTAAAGACTTATATTTAGGAACGG
AGGGAGTAGAAACGAGTCCTAACAAAACGTGGGATCAGATTACAGATGTAAGGCATTTCC
CTTCACTAGCTAATTGAACCATCCTACTGGGTACTCATCTGACACACCTCCATGACCCAT
AGTCGTCTTCAAGGATTAGCTCCGCTGGCCACACCTAATGACTCAGCCTGCAGCCACAGC
GACGTGCTAACCCACGCATCACCAAAGCGCCTATATAAACATTAACCCGGTGCATGCATT
TCCACACAGCCTAAGTTAATCAATCAAAATGGCTTCTTCAATGCCTTGCCTAGTCCTACT
CTTGGGCATCGCCTGCCTGCTGCAGGCATCGCTGACCGCGGCAGACCCGCCGCAGCGGCC
ATCATGGGAGCTGCCGGAATCCGAGGTGAGGTCCAGGTGGACGAGGTGGCAAACCAAGTA
CTCGAAGCGCTACCCGAGCCACGAGGAGCAGGAGAAGCGGTTCGGAATCTTCAAGACGAA
CACCAACTCCATCGGCGCTTTCGCCAGCCAGACAACGGTCAACGGCGGCGTCGGCTCGTT
CGGCCCCCAGACCGTCACGACGGTCAGGGTCGGCATGAACAGATTCGGCGATCTCAACCC
CAGCGAGGTCGCCGAGCAGTTCACCGGGTTCAACAACTCCGTCTTCACCCCAGAGCCTCC
AACCCCGCTCCCCTACGACTCATGGAAACCGTGCTGCGTTGACTGGCGCTCGAGCGGCGC
CGTCACCGGCGTCAAGTTTCAGGGTTCTTGCTGTAAGTCAAGCTAGCAAACTCCTGCTCA
GGTTTATAACTTTACATATTTTGGTCAGTTCTCGTAGAGTAACGACTAACGAACATGTAT
ATGGCAGTGTCATGCTGGGCATTCGCGGCCGTGGCGGCCATCGAGGGCATGAACAAGATC
AGGACCGGCGAACTGGTGTCTCTGTCGGAGCAGCAGCTTGTGGACTGCGACACCGGTAGC
AGTGGCTGCAGCGGCGGCCGCACAGACACTGCCCTGGGCCTCGTGGCTGCCCGCGGCGGC
ATCACGTCAGAGGAGAGGTACCCGTACAGCGGCTTCAAGGGCACCTGCGACGTGGACAAG
CTGTTGTTCGACCACCAGGCGTCCGTCAAGGGATTCAAGGCCGTGCCGCCCAACAACGAG
CGGCAGCTGGCGCTGGCAGTGGCGCGGCAGCCCGTGACGGTGTACATCGACGCCAGCACG
TGGGAGTTCCAGTTCTACTCCGGCGGCATCTTCCGGGGCCCCTGCTCCTCCGACGCCGCG
AGGGTCAACCACGCCGTCACCATTGTCGGCTACTGCGAGGAGTTCGGTGAGAAGTTTTGG
ATAGCCAAGAACTCGTGGAGCAACGATTGGGGCGACCAGGGATACATCTACCTCGCCAAG
GACGTTGTCGGGCCGACGGGCACATGTGCCCTCGCCACCTCGCCCTTCTACCCGACGGCT
TGACCGATGCCGGCTTGCCGGTAGAGTTTTTAAATTTGCGTGCGCACAATAGTTGCTTAC
GTTTAGTGCATCGATCGTACGGGTTGTTAAGAATGATCGATGGTTGTGTGTTATTGTTTC
CCTTATCATTGTGATAATACAAAATAAAATATTGATTGTGTTTATGTATAGTTGAGCAAT
CAGTAAGAGAGACAGCTCATCCCCGAATGTATTCGTTCATATATAAACTTGGTTCGACAA
AATCTGTTCACATTCAACATGGCGTGATCCCATATCACAACTAAACATGCAGCTAAGCGT
CAGCTCAAACGGGAAGCAAACGTTTACTGAAAGCTAAAACTTTTCTTTATGATCGGCCTG
AGAGATGTATCTGCCGAATTTGATAAAAATGGGCCCGGTTTTTATTTTTGAAAGATCCAG
ACTTGCTCGCGTTCATTGATTTATGGAAGCAGGAAAATAATGTTGATCAACGACGAAACA
CACCCACCCACCTCCAGGTCGCTCCCACCGGCGGCCAGGGAGTGAACCCTAGCCGTCGCC
AGCGCCGTCCCGCATGTCCCCTCCTCTCCTTGCCGTCGCCGGCGGGGTCGCCGGGCAAAG
CCCGCGTGGCTCGGCGGCAGCAGGGCCCTCCCCTCCTCCAGATCGGACTTGGACAGCGTG
GGCCGTCCGCTCCTTCGGGAGTTCGACGCGGCGCTCGCGTAGGCTTCTCCGGCGTGGGTC
GTCGCGGTCGGGGTCGTCGCGACGGGGGAGGGCAGGGCGCGGCGTGCGACGGGGTCATCT
CTCCTTGTCTGGCGGTGGGAGCTCGACGTAGCGGTGGTTCGATCCCCTTCCGGTTGCGCG
GCTAGGCGGCTCCAGGCGGGCCAGTGGCCTCGGCAACAGTGCAGGTTGGCCTCTCGGACT
CGTCCCTATGGCTCCTTCGGCTCCGAGCAGCGTCTCTCGTGGGTGGCAGCCACTTTTGCT
TCGTCCGCGGGCTTCGGTTCTTAGGCCCGGACGCACATCTCCGACGAGTCGGGGCGTGTG
CGGCCCTCCCCTTCCTGCTATATAGGGCTCATTTTTGCGTTGTCCAACGACGTGTCAGTC
TTTGGTGGACTTCCGGGTGTTGCACCAGCGGTGGGATACCGGATCTGGTCGTTTTCGGCT
GGCTCGGGCTCGATGGTGTCTCTGGTCATCGATGAGGTTTCTACTAGCTTCTCTTGTCAT
GTCGTGATGACTTCGTGGGAGGTGTGCGGGTTAGCGGTGCGGTGCTTTGCGTGTGGGTGT
GGTGTTTGGCGGTGCTCGGCGCGAAAGTTCGCCGGTCTTACCGGCCGGCGGCGTCGACGT
CCGTGGATGTTGTGATACCTCCATGGAGGAGTCATTGTGGAGTCCACCCCGTACACGCCC
TCGGTTCTAGCTCTTCGGGTGAAAGCCTAAGGCCCAGTCGGGTCGGGCGACGGTGTCGAC
ATCGTCGCTTCCTTCTTTGGGGCATCATCCTGAAGAGCTTTGGATCTCGTTTGCGCGCTC
CTTGGGCTGGACGCGCGCGACATTGCGTTCGACAGGTGTTCGTCCGGCAATGGTGATACA
GTGCAGCTTATTCGGTGGCAACGATGGTGGCTGCGGGGGAGTTGGTTTGCTGTTGGGCTT
TGGTAGTCGATCTCTTCCGGCGTGTTCGAGGGATTTCTGTGCCTCACTTGTCTTCCTGAA
GTCGGAGCTGCAGAGGAGGTGTCTCCGCGGTGACGATGACATGAGACGGATGGTCGGTTG
TGGTACCGGCTCGTCGCGGGGCTAATGCTTTTTTCCTGTAATGCTCGTGGTTGGAGTCGG
AGCTGCCTGGTTGTCCGTGTGTGCGGTGTACTGTTTGGCTTTCGCCGGCGCAGGCTTCGA
TGCTTGTCTCTTCGAAAACATGTGTGGGTTGCCAAGTCACCCAGTGGGCCTTGTTTTTTC
GGGCGTGTTGTATCCGATTTCACCCGGTTTTTCGTTAATTAACTCGGCAATTCTCTTCAA
CCTATTTTAGTGAATAGGTCCTTAAGGGACCGCGTTTAAAGAAAAAAGGTTGATCAACGT
TCGAAGGAAAGGAAAAGGAGCCCCTAGGCACATCAACAAGCCTATATCTACCCCGGAAAA
AAAGAAAAAAAACAAGCCTATATCTCATCTCTTAAAAAACAAGCCAAGCAAAGCCTGTTT
GGCTGACGGCGGTAGCCAGGCTGTGGGCAACGGCTTCGACGAAAGGCGCGGAAGAGTGTG
TGAGACGAAAAACAATTCAACAGAGATCTTCATGCATCGGTGTAAGGCTAGAATGATTTG
TGCGCACGGATAGATGTGTATAGGGACGTTCACCGGAGGATGGCTAGAGTGATAAGGGTC
ATCTCCGTTCTTTGGTGCACTGCATCCCAGGATGACCAAAAACGCTCACCGTTGTTGTTG
CCGGCAGATCACAAGGCCAATGGTGGTCGGTGGTGGCGCCTTGGACTTGGATCGGTTAGC
CGATGTTGGAAGTATGCCCTAAAGACAATAATAAATTAGTTATTATTATATATTTTTTAT
GATAATCATTTATTATCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACATGTGTGG
ATACATGTATTTGTGT