morexGenes - Barley RNA-seq Database

Contig contig_54050
Source Contig contig_54050
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_54050 (6441 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_54050

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68007	3	2818 bp	MLOC_68007.2	Available	Available	LOC_Os01g39890.1, FRAME:+3, EVALUE:4e-143, 13101.m04081 protein transposon protein, putative, unclassified, expressed
CDS Structure of MLOC_68007

Contig Sequence (6441 bp)

>contig_54050 6441 assembly3_WGSMorex_rbca.fasta
ACTAGTACCAAACAAGGCCTTAGGGACATTTTGTTTGATTTCAGATCATCGTGTTAAGGG
ACGATATCAGATCTTGCCATCTTTGTCTCTCCTCTAGATTTGATCCATAATTGTAATCAA
GGTTTTAAATAGCTGAATGTAGTACGAAAATTGCTTTTGGCTCCCAAGCATCATTAAGGT
CTTTTCGTGGAAATAATTTAAAATTCAAACGTTTTGGTTTTAAAAAAAATTAAAAAAAAT
ATGCAAGTAAATAAGGATGTTATATATATATGTGTAAAATTTTAGAATGAAAAATGTTGA
AATGCGATCTATACAAAAAAGATAAATTCATGACCTTAGAGGATGAATAGTATCATGTGT
TAAAAACCTTTATATTTGTCTTTCTTGCACAACTCTCATTTCAACGTATTTTTTTCTAAA
AATTTACACACATGTGTGTTACGCCCTCACATATCTTTGTATTTTTTTCATATTTTTTTT
GAAATGTAAAAATATGAATTTTCATAAATTTTAATTTCAAATTTAAAAGTCTTCATGGTG
TTCGGCAGCCAAACGTCCATTCTTAATATTAATACTATAACTATTTGATCAGGGTGTCCC
TAAATAATAAATATGTACAATAGTTCTGTAAATTTATAAAAAAATGGCTATAGCCACGTC
GTAGCGTGAGAAGACGTCCATATGAAATTTATCACTTTTTTTTGTACTACTTCCTCTCTT
CTTTTTTTTAAAAACCCAGTGCAAACTCTGCCACATTAGAAAAAAAAATACCATTTTCCA
GTTTTACTCTCCCACCCGATCCACTCGCTCGCTCTCGCATGGCTCACTCGCTTTATCCGT
CACCTCTCACCATTTTCCAGTTTTACTCTCCCACCCGATCCACTCGCTCGCTCTACGTCG
CCGACGACTCCTTTTTCTCATCGCTGACCTCTCCCTTTCCTCATCGCGCGGTGGCCCGGG
GATGGTGGCAAGGACGCCAGCCGTCGCGGCGGCACTCCGAAGGCCGTGGTTTGATGAGCC
ACCTAATGCCATCATTCCATTACTTGTAAGAGACAATGTGTTGATTCCTAGCTAATAAAG
TTGTGGTGAGATGTTAAAAAAAAGTATTTACACAAAACATGAAGAAAGTTGGCATTTCGT
CTTACAGACCTGTTGCTGTTAATAAGTTTATTGTGCAAAAACATTACCCTGCAGGGTGCA
GGAGAGCGTCCCATGCACCAACATAGGAGTATTGATCAGGAGCTTCTCAACTCGTCTGAG
TACCTTCTATTCTTCTCGGGCGAGTGGAACCCGTCTGTCCCGGGACCGGCCGGGCGGTCC
GGCCGGAGAGCGTGGTACCTGGTCGCCTCCCGCCTGAAGGAGGCGCCATTGTCGCTCTTG
GACCTCGCCAGCCGAGTCTTCGCCTCCAGCCTCGGCGTGGAGGGCGCCTCCCCGGCGCGC
GCACGGGCGTGCAAGTCCACGGTCGTCACGCTGCTCAGCGGCGTCCGGTCGCACGACGAC
AGCGGCGTGCTCTCGTACGAGCTGTCTCCGCCGAGCGCGTCTTGATTGCTGGAGGACAGC
CACCGCATCGCCTTCTCCAGATGATCGTCGTCCGGCGCGGCCTTCTTGCTCTTGCGGTCG
TGGCCGTGGCTCCTTCTGCTGCTCGCTAGCAGCTTCTTGATATTCCTCAGAAACTTGAGC
TTGCCATGCCCGGCCCGATTCTCGGGCGCGGCCGCGGCCGGCGACGGCACGACCGGACTC
CGCCCTGGCTCGTGCTGATCTCCAACATGCTGCTGGTGACTTTCGCCGTCGCCGTACATG
GAGTCGTTGAGCGGCGAGAAGAGCGCGGGGTCGTAGCCGTCGAGGCCGAGGCTGCCATAC
TGGAGCATGAGCTCCTTGGCCTTCTCGCTGGAGCGGTAGCTCATGCTCTTGCTGAGATCC
ATGGCCGACGGCATTGCGCTGGCAACCCCGTCCTGATCCTGCTGAGCGGACGAGGGGTGG
TGGTCGCCGCTACGGAGGTCGTGGCGGAGGCAGGCGTTGACCCACTTGAGGTAGACGAGC
TCCTCGACGTGGGCGCAGTGGTCGCTGTGTAGCTGCTCGATCTGCCTCGTCAGCCGATCG
TTCGCCTCCCTCAGGTAGTTTGCCTCGTCAACGATGTCGTCCTAAATTCAGAAAAAAAGG
GGGGAAGATGACTTAGCATGTTTAGCCACATAGACAAAGATTGCCGATACTGAAATCCTG
TGACAGTTACACAGAGAGAGAGAGAGAGTAGCACATGGTAAAGTTTTTTTTTCTACCCAC
AATGTGTACATGGGAAATTCAGACTTTGCACTTGTGGGGGAGGGAATGTTCTCAAAAGAT
AGTGACATATGTCTTCTATAAAAATAGTGGCACCATGTGCGCATGGTTTCTCGGTGGGAC
AGGGAGAAGCTGACATAATATTCGCCAATTGGCGATTGAATCTCAAGAATTATAGAATGT
TATAGAAAAATACAGCAACTTATTCGTTTGGAGTTCACATATACTTCCTCCTTTTATAAA
TACAAGTGTTTTTTAAAGATTTTACTACGGATAAATTTTAGTTTAGAAACAGAGGGAGTA
GTTTAGAAAGGTATTGAATAAATATCGAGAAAAAATGTGCCAAAAAGTGTCGCAACTCGT
ATAATTGTGAGTTTCAACCGACTTCCTTCATTTTTAAATATAAGTTTTATTAGAGGTTTC
ACTATCAGACTACATACAAATATATAGAGACACATTTTAAAATGTAGATTCACTCATTTT
GCTTCGTATGTTGTCTTTTACTGAAATCATTAAAAAACTTAAAACTTATATTTAAAAATA
AATGAAGTACTACCTCCGTCCGAAAATACTTGTCCTAGAGATGAATGTATCTAGACTTAT
TTTAATTGTAGATACATTTATTGTATGTATTTTTAGGACAAGTATTTCGGGACGAAGGGA
GTATTAAATAGTAGTGCATCAAACAAGGTAAGATGGTAAAATGTTGCTGTTTGGGTCATA
ATCGCCAAAGCGGTGACCACAACAAAAACTAATTGGTCACCTTATGTTCAGTTGCACCAC
GCAAGAGCCTGATCAGAATAAAACCAATAATTCAGAAGGTTCTCAACGTAACCTTAGCGT
CGAATTAAAGCCGTGACAGTGACATATAACAAAAACAACTTGGCAGATTTTTCAGCCGCC
ACTTTGTTCCAAACCAATGAAGATGAAACGGTCATCTTGCGTTTTGCCAACAAAACAGCA
AGCCAGTATAAAGTAATCCAGACATCCAAAGAATCGGTTTCAAATGTAAACTATTTTGTT
GGATTTGCTATTTCAACACATCTTCTTCTTCTTTGTGTGCAGGAAATTTCAACGCATCAC
GAGCTTAGAAAGGACATTTTGGTTGAGAAAAAAAGCATGTTTTTTTTACTATTTTTTTCT
CTCTACATGAAGATAGCTTTGTTCGCTTGACCAAAGCTGCAAGCCGTTCAACAATCGACG
CATAAATCTGGAGAAATTGAAATGTACTGCCGATTTTCGCAAATTTGAACGAACTGGCAG
AAAATGTTGCATTGATAACAAGAAATTTGGAATGCAGTTACCTCACGAACCAGAGTAACA
GCGGAGGAGACGTGCTCCGCATCCTGCAACCTCTGAGCAAGCTCCCTGTTCCCCTCCTCC
AGCGCGGCCTTGGCCCTCCGTAGCTCCGCCGCCTCCGCCGCCAGCACCCTCTCCCTCTGC
TCGCCGGTCTTTTCCAGCCCCATCACCTTGTCCCGGAGCATCGCCGCCTCGCTCTGAGAC
TCCTCCCGCTCGACCTTCACCCGCTCCTTGAGCGCCCGCAGCTTCTCCTTGGCGCGACCC
AGCTGAGCCCGGACGGCCTCCAGCTCCGCCGCCTGGTCCTTGAGCCTCTCGTTCTCCTCA
CGCAGCGACAAGACCTTGAGCTCCAGGAGCCGCGCCTCCACGGCGGCGAGGCCGAGGCGG
TTCTCGAGCTCTTTCACGGTGGCCTCCTGCTCTATAAGGCCGTCGAGGTCCATCAGCCGG
AGCTCCAGCCTCTGCTCCCGCTCCACGAGCGACAGCCACAGCTCCTTGAATCGTTCGACC
TCCTCCTTCTCCAGCTTATCGTGCTCCGTTTCCCATGCAGAGGTTGCTCCAGCCACGTCG
GGTGGCATGGTGTGAACTCTTGCCACCAGAACTGGCTCATCGTCCCCGGCACCGATTGAC
GCGCTGTGGATCACGTTTTCCAGATATTCATCCTTTGATACGAAGGGCAAACAATTAGTT
TAGTTTGATTGCATGTACTTATTTGCCATGATCGAGAAACGGAAGTTCTAGCCAAGGATC
ACGACTTACATCCGATGCCACAATTCTGAGCCCATCGTCCGGCGTAGGCAGAGCACGAGG
TCTGGTTGCTGCAGACAAATCGATGCAAATCAAATCACATATGATATAAACGTGAGCATG
AGGGTCAGCTACGATCAACTAATGAAACAAGCTGCATACCAGAAGTTGGCCTAGCTGCAG
CAGCAGAAGCAGCCAGGCGTCGCCGGCGAGGCTGCTGATCTGAAACAAAGAGCGCAGCCG
CGTAAAGTGCAACGGCGGCAGCGACCATCACGGATCCCTTCGGCGTCCCTTGGCCACTGC
TCTTGCTCCATCCAAGAAGGCGGCTAATCAGCGCGGAAACAGGGAAGCTGGCCAGAGTAC
GATCGAAGACCGCCCTCATGGGATCAAACCGGAGGGAGAATATGAGGCCAGCTCCTCCAT
TCCAGCCTCCCTCCTGGTGGTCCATGGCGTCAAGCGAGCGCCATATGTTGGGCATGCTCT
GCTCTCCAATTCGCCATGCCCAGGGGGCGCCTAAGCAGCGACCTTGAGGAGGTCCCATGG
GGCATTTATGTCCAATCTTGGTCAATGAAATGGAAAAGGAATGGTGGTGCTTGGAAATAA
AAAAAGTTAAGATTTGATTCCCTGTTGCATGGATGGAAGGTGGCTAAAGAGAAGAACGCA
TCAAAGTGGCCCACAGGAAGGAAGGAGCAAAAGCAGAGGCCAGAGTCTGTTGAGTATTCA
TCTCTCCTACATTGAGAGAATTTGGGAGGATGCACTTTTTGATGGGTGTACACCAACGAA
ATGGAGGTTTAGTTGGTGCTTGTATTGGGTTGGCGCTGTGATTTTGGAATCATCAAAGTT
TCCACGACTTAGTTGCTTATGTGTATTTTTGTCGTCTGGGAATAGAACGGATAGTGTAGA
CATAAGAGTGCGTCATGATATACAAGAGCGGTGGCAAAACCATGGTCTGCAAACCATGGA
TGCGATACCGTTTGGTGGCACAAACATCTTCATACTTTGATAGATACTCGCTCGGTCCTA
AATATAAGTCTTTTAAAGCAACTCCAATCAATCGACTCAAACGGACGGGGTGTTTGTTTG
TTTTTTATCTGTTTGGATTGACTGTCCGCTCCGTGTCCGTCCGGTTTTCTTTTTAGGTCG
ACCGTGTGTCCAACACGGGCAATCCAATTTATGTATGTACATTTAGATTAAACATGTCAG
CATGTCAATGTCCAAGTGTTCATGTCGGTACCATGCCAGCGGTCGGCATACATTGACAGG
CTACATAAAACCACCACGCAGGTCATGCTGGCACACTTGCTCGTGACCGACACACATGCC
AGCACGCCAAAAGGGGCGGGAATTCAACCACGCCATGTCGGCCCGTGGTCATGCCAGCAC
ACTTGCCGGCATAAAAAAAAGGGACTCTGATCTCCGTCGCGGATCACAAGTGGTCGAACT
TGAGCATTTCAGTCTGCATCTTCTCGAACCATAGTCTCTTCTTCGGTGACATGGTGTTCA
GATCAACGTTCGTGATCTCCGCGCCCGTCATCATGCTTGCGAGGACTCCTTCTTTCGCCT
GGGTCCTAGCATTGGTGGCCTCGATCTCGATGCTTGCTTCGCCTCCTCCAACTCAAGCAT
CTTGGCTTGCCTCTCCTCCAACTCAAGCCTCCTCCTTTGGATTTCCATGAAGGCGTGCAT
TTGCTCTTCATTTTTTTGCCGGCGCTTCTCTTCCCTCAAGTCCTTCTAGATTATCATGTC
CTCCACCTTTTCAAGCAAGGCGGTCGACGCCGCATCCCGCCGGTCCTCCTTCTTCGAGTT
GGTCTTCCCCCGCGACCGGGGCTTCTCGTCGTCACCATGGTTCTACACAACTTCTTCCCC
CCCCCCACGCGTGAAGAGGGCGGCATATTGGGCCTTGAACTTCTCCACCCCATTGATGAT
AGTCTAACAATGGGCGAGATGGAAGGCTTTGTCATCGTGCTGAACCTTCAATGCCTCCAA
AGCTTGGAACACCTACAATTCAAACCAAGCAAGCATATGTGAGCAAATGGACATGCAATC
CATTGGAAAAATGTGTGGCACCAAAAGGGAAAGGGAGGGCATGCCTATCATGTCTTGCGT
GCTGATGACCCACAAGTATAG