Map Locations of contig_54030 (9810 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_54030

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67994 1 713 bp AK375276 Available Available None
MLOC_67995 1 439 bp AK375276 Not available Available None
MLOC_67996 1 998 bp AK367480 Available Available None





CDS Structure of MLOC_67994






CDS Structure of MLOC_67995






CDS Structure of MLOC_67996






Contig Sequence (9810 bp)

>contig_54030 9810 assembly3_WGSMorex_rbca.fasta
CGGTGTGAAGGAGGAAGAAAGAGAGAGAGTTCGCGCGCGCGCTCGAGTCTGCCGCGCGCG
GAAGTGAGCGCTCCAAATTACCAGCGCGGGATAAGGCTATGGACGGCGCGTCCAACTTGT
TTTAACGCGCGCGCGGCCCGTTGAACCATCCCGCCGCGTCGCGCATGCTAAAAAGACATA
TTTTTAAATGCGGCGCTTGTTTTGCGTTGCTGTTGGAATGCTCTAAGGCCATAATCCGAA
GCAACCCTGCGTACTGACCTCTCGAGGGTCCTCAAAAAGTTGCCATGAAAACTAGTACTC
AACATGGACAATGCATCGATCGGCAGCGACGTATGCTGGGCAGTGAGCACTGCACAGGCT
ATAAATACAGCCATCCAATGGACATACCATGCAGTGCAAGGCGCAGTCGATCGAGCAGCG
ATCAAGCCAAGCTAAGCTTAGCCACGACGAGGATATGGGTGCGCTTGGCGTCCTCCTCGT
GATCGTGATGGTAGCAGCCATGGTAGCAGCAGCGGCGGCGGCAGCAGCTGCTGCAGCAAC
GGCGAGCGGTCCTCGTCCCTTCTTCGTGTTCGGCGACTCCCTGGTGGACAGCGGCAACAA
CAATTACCTGGCCACCACGGCGCGCGCCGACTCGGCGCCCTACGGCCTCGACTACCCGAC
CCACCGCGCCACCGGCCGCTTCTCCAACGGCCTCAACGTCCCCGACATCATCAGCGAGCA
CCTCGGGGCCGAGCCCGTGCTGCCCTACCTCAGCCCCCACCTCGACGGCCACAAGCTGCT
CGTCGGCGCCAACTTCGCGTCCGCCGGCGTCGGCATCCTCAACGACACCGGCATCCAGTT
TGTAAGCTGCTCAGCTACTACCTACCTGCTTGCACATGCCTGAAATTTGCAAACGCAAGG
AGCAGACGAAGGAACGAACACACGAACGAGTTGCATTTCTGCCACCTGCAGGTGAACATC
ATCCGTATCCAGAAGCAGCTGCGCTACTTCGAGCAGTACCAGGGCAGGGTGCGGCGGCTG
ATCGGCGAGCCGGCGACGCAGCGGCTGGTGCGGAGCGCGCTGGTGCTCATCACGCTCGGC
GGCAACGACTTCGTCAACAACTACTACCTGCTGCCCTTCTCCGCCAGGTCCCGCCAGTTC
GCGCTCCCGGACTACGTCCGCTACCTCATCGCCGAGTACAAGACCATCCTCCAGCAGCTC
CACGGCCTCGGCGCCCGCCGCGTCCTCGTCACCGGCTCGGGCCCGATCGGCTGCGCGCCG
GCGGAGCTCGCCACGCGGAGCGCCAACGGCGAGTGCGACCTGGAGCTGCAGCGCGCCGCC
GCGCTCTACAACCCGCAGCTGGTGCAGATGACCAAGGAGCTCAACGCCCAGTTCGGCGCC
GACGTCTTCGTCGCCGTCAACGCCTACCGGATGCACATGGACTTCATCTCCGCCCCGGCG
GCGTACGGCTTCGTCACGTCCAAGGTCGCGTGCTGCGGCCAGGGCCCGTACAACGGCGTG
GGGCTGTGCACCGCCATGTCCAGCGTCTGCCCCGACCGCTCCCTCTACGCCTTCTGGGAC
AACTTCCACCCCACCGAGAGGGCCAACCGCATCATCGTCAGCCAGTTCATGGCCGGCTCG
CCGGACTACATGCACCCGCTCAACCTCTCCACCATCCTCGCCATGGACGCCGCCGCAATG
CCATGATCCATTGCCCTACTATTTTTCTCTATCTTAGTGTGCCAGTAGCATCCGTGCGCA
ATAAAAATTGCTGAATAAGCAGAGTATCTGTCCTTTTAATTCGCTCGAGTAGTCAATAAA
AATAATAAAGTAACTACGCTACTCCTATTTTGTTTATCATCCTCTGCATGATTCCCTATC
ATGAAGATTCTGCCTCCAATCATCTTAAGTATGATCAATCACGGGATAGTGTCAAACAAA
CAAACATATATCAATCTCAAATCATTGCCAAAAACAGCTCTACACTTGCACCTGGAAAAC
ACCTGGGGAAAGTGTATCACTCTGTTCTGTAGCAATGATAGTACATGAACCACTCCCGCA
GTTCTAAGAAATGATTCCAAATGGAAAGACAACTCAAGTGTAATCAATGACACATCGATC
ATACAAACATTCCAAGACACGTGATAATTAATATGGCTTTCAATGTCTACCGCTGAGGGC
GAGGCCATGTCTATGGTCTTAGGCTCTGATGGTGCAAATCATGCCCGAGCTTGAGGAGCT
ATGTGTCAACCTTCCTTTGCCTCCACTGGTGAAGCAGGGTTGAAAATGAAGCACAAAGTT
TCTGCTTTTTCCGGCAGGAAAAAGGAAACAAGAGGAAAAATAGAAATGGAAGAGCATTCT
TTTACATGGAAACAAAACAGAACGAAGCGGCGTTCTCCGATGAAAAAAACATAGAAACGG
AACTTTTCATTTTCATGAACATGAAACTTTTTGTTTTAAACATGGGCACATAGCTAGTTT
ATAGCGAAACGAACACCAAATGAGTAGAATGACCCATGTGTGGCCCAAGTAGTACTACTA
ATGTGAGCATGTCAGTGGAGCACTATGGTTTGAGCTGCACTATTATGCAAATGTTTTTGG
TTGTTTGATGCCTTCTTTTGTTGCCAAAGTTGAATATTTTATTGGTTTTCTTGTGTTTGT
TTCTATGGCTCAAGGGGTCTATTAGTCGTGTTGTACACTCGTTTATGTCTTCGTGTCCGC
TCGGTATTCTCTCTATTTTCGTTTTCATGAAAATTTGTTTTTGTATTCATTTTTTATTTT
TTTATTTTTCCCTTCTTTAATAAAATCTAAAAGAAAACGTGGCTCAGTTTCATTCTTTTT
TGCTCCATTTTTATCCCTATAGTGGATCATATGAATGGGGACTTGCAAGCAACGTTGAGT
GAGGGCCAAGATTCGCCTTTGTCAAGGAAGCGGCTGGAGGTAAACTCGCATTTGCGCTCG
GTTGTGGCTTTCGCGCCAACTCTACCCCCATCGACAAATATTGTCGATGCTCTCTTCACA
AAAGAGCTTTGCGACGTGCTTGTAAGCTTGGAGACTCCTAGATTTGGATTCGGAAGGGCA
ATTTCTTGCCTCCTAACAGGGACAACAATGAGAGGCAAAAGTAAGAAGGTGAGTGTTTGC
CCTCGGACCGACATCCTGAAGGCGAAGCCACTCAGGTGCAAAGGTAAGAAGAGCGGTACA
ATAAGAAAGCCCCCCCCCCCCAGGTGCTAGATGGATGATCTTCGGTATTTTGGCACGCCC
TCATGGTTTGGGTCGTTACCGTGGTTTTCGTGTTGCATATTGCCTTTGGTTGAGGTGTTC
TTTTACCGGGGTTTCATTGCATTATAAAGTGTTCGAGGTTGTTGCGTGTGCAGAGCATTG
GGCACGTTGCAGGTGCGATCGTGGGGTTTCAGGCTTAATTTGTTAGTCCTCTTATGGTCA
GTTTGTATCTTTTTTGAATGTAAATTAGCTAGACTACTCTCTTCTTCTTCATTAATCGAC
GAGATAAAGTTATTACCTCTATTTCAAACATAAAATGGCCAAAATGGGGATTTCATGTCT
CATGTGCATGAGCTGGTACAAGTCTTGTTGGTAGAGGAAAAAGAGCGATAAGGACATCCA
GCAACAATTAGCTAGAATCATTTCCTAGAATGAAGGCATGTACCTCTCACTATCTAGAAA
CTTTATGAAGAATTCCATGTATGTTTTTTCTTCTCGAGACGTCTTTATGTCTCTACCAAA
TCCAAAATAGGAACCAATTGAACAAAAGAAGCACCAAATTGTTTGCCCACTGTCTGCAAG
GTTATGCTTGATCCAACATTAAAAGTCAATGTTTGCTCCAACAAGCAAAGAAACCCTCCA
AATGAGCCCCCGGTATAAACAAACAATGGTGGTGTTTTACTGTCCATGTCACTTATAACC
ATTTTGAATTTCTCAACTTTGTCTAGTGGACACTCTATCTTTGTGTTGACTTGACCAGTT
GAAACAGGTCCCTCAAAGGTAAACTCGTTGTAATGCATGTTTAATCCGTCTAGACTATAT
TCCATTTGCTTTACTAAGATAGTTACTATGAACTTTGTGAAGATGAGAGGCTGGGATAGT
TTGGTATTTAGAACTACACTTTGTGGTGAGACCGCTATGCAATGGAATGAGATGGAATGC
TTGTGGACCCAGTTCAAATCTTAGGCGAACAAGATAGAGTTAGATGGAAAATTGGTGCCA
AAAAAGTCTCCAACTAAAATTGGCTGCAATTGTGGGTTATAGAAGTATCTGGAAAATCAA
AATTACTTTGTAGATTTAAATCCTGTGGCTAATGATAAGAAACACCATTTTAACTAAAGA
CAACATGTTCAATAGATGGTGGACTTGGAATTACCAATGTTATTTTTGTTGCCAGTCAAA
AAGTGTAAAGCACCTACTTTCCCAGTGGAACCTTGCTAAATTCTTATAGTGGATTATTCT
TTGTGCTTTTGATCTAGTCAAACCTTCAAATTATGTACATGGACCCATCGTTGGCTGGCT
AGATCACCCATCGAAAACTGAGAGTCTTGCGAGGTAGTGCTCTCTGTTGGATGCTCTCGA
AAACCATAAATGTGGCTGTTTAAATAAGAAAATGGCCGACGATCCTGCGAGTGTCATATT
TAGCATGTGTCGTCATCTCACAAGTAAAAAAAATGGTGTAGACAAAACAAGGGGGCATGA
ACCATTGAATCCGGAGTTGTGAAGATCAAGATGGTGATGCAAGAGATCTACAGGATAAGA
CCTCGGGGCGCTTATGGTTCCTAGGGTTATGAGTGGTTGAGCATCGTTTTATTGAGCTTG
AATCTTTGTATTCTAGCTTTTGTTCTTGTTCTATCTTTGACGCTTATTTGTTGTTTTGTT
ACTTAAGATGTCGGTTATTGAGGGGTATACGACACTTATGTCCTGCTAAGTTTGAGCTTG
GAGTCACCTGATCTTGGAGTAGTAGTGATCAATTTAGCTTGGTGTTGTTTGTACTCTTCC
TCATTTTATTTTTGCTCTTTTGTTTTACTTTTTTTGTGTCTTGTAAGCGTTGGAGGTTTC
TTTAATGGAAATCGATGAGGAGGCTCGTCATTTCAAAAAAAAAGAGTCTAGACAGCCAAT
TGCGTGCGGGCATGAGGACATAAATATCACACCAGTGTGGCCTTAAAAATGTGAGTTTTT
GGTATAAAAACACTGCAACACGCATAGCGAGGGAACACCAACCATTGTCTTTAGAGTTAA
AAATGACGAGCAGGCATATAAAATTGCTAATTGATGTAGTGCCGTTAATTTTGATCAAGT
TGCCAGATGAAAGTCGTTGTTTGTTCAAGAGAAATAAACCCCAAGTTTTTTTAAAATATT
GGTGGACCCTTACTTGGCAGTTACTCACGGATCAAAAAAAATAAGTAAAAAGTACCAACA
AAAGAATACTTGTACTTATTAAACAATATTATAATCATGGTAAACAACACTTGTAAAGCT
ATTGCTACGGTTCAAAAGATAAGACTTCCTTTTGCGAGGAACAGTCCATATGATAGGTGG
TCACAAAGTCATACCCTCTTCGTTTCTAAATATAAGTCTTTTTAGATATTTCACTAACGG
ACTATATACGGATGTATATAGATATATTTTAGAATATAGATTCACTCATTTTACTTTGTA
TGTAGTCTCCTGATAAAATATTTAAAAAGACTTATATTTAAAACGAAGGAAGTAATAATT
AATGTATGGCAAGGACGAAATTGTGATGTCAACTGTAAAGCTACAAGTTGTAAACATGTA
TTGACCACCAGCTTCATTAAACGAAAAAGTGGCCATTGAAGCACAACTCGGCAAGGGTTT
TTAGCATTACCAGGTGAAAGGCTGACCTAAATAAGCTCTGCACACCAGCAATACGGTAAA
AGAATATGGATAACTAAATTGAGGTTATCCCTTGTCTCTCAAATCTTATGAAAGAAATTT
TTGAGAGCCATCTTTCAAAATAAGCCGCTCTCAAGCTTTTTCGATGTATATAAACGTGTG
TAAAAGTGTTCTCATATTTTGAGACGGGAAAGTACTCCCACCGTTTTTAAATATAAGTTT
TTTTAGACATTTTAATAGGGAAATACATACGGAGGAAAATGAATGAACTTACACTTTAAA
ATATGTCTATATACATCTTAATATAGTTCTCTATTGAAATGTTTAAAAAGACTTATATTT
AGAAACGCAGGTAGTAGTGAATAGCAGACATTGGAATAATTAATATGGTTTGCTTAAGCT
GAAATCCTGACCTTATTCAATTGGAGCGTGTACTTTTTTTTTTTTAGCGTGCACGGTTAT
TAGCTACACGCAGCATGCTTAATCGGACGAGCCAGTTGACATTTGACTTTTCCGGGTCAG
ACTATTCTGGCTGTCACAGTCAGAGTCACACACCGGGCGCTCTCCCCCGTCCGGCCTCTC
TCTGACAGCCTGACCCCACAGCGAAGTCAGCCCCTACCTCAGCCGCGCGCACGTCAGGGC
GCGCGTCGCGATCCACTGCCCAAGACCATCGAGAAGCTAGCAGCGAGCCTCCGCGTCCAC
ACGTTTTCCTCCTGTGCTACAAAATGGGAAGATCAACGACGCATATCCATCCTCCTGGCG
CCGCTCTGTCAACGACATCCGCGCCGCGTTGCTGTCGACGTTTCCAGGGTCCTATATAAG
CGCCTCCATTGCCATGCCTCACTCCAACCACGTACGCCCACTCCCTCCAAGCTCTCAGGT
CTCTCTCTCACTCTCTCTCTACGCCCAGGACCAGGACACATAGCCATGGCTGCTGCGGAC
CAAGACTGCGCCGCGACGTTCCATGGCCGTCGCGGAGGCGACGACACGGCGGCGGCGGAG
CTCCACGGCCGGATGATGTCAACGGAGCAGGAGCACGGCATCATCGTGGCCGCGCTGCGG
CACGTCGTCTCCGGGTACACCACGGCGCCGCCGGAGGTCGTCGTCGCCGTGGCGTGCGGC
CGCTGCGGCATCGACGGCTGCCTCGGGTGCGACTTCTTCGGGGCCACCGAGGCGGACGCG
GTGACCGTGGGAGCCTCAGGAGCGGGGCAGAGGAAGCGGCGGAGGAAGAAGAACGTCTAC
CGCGGCGTGCGGCAGCGGCCGTGGGGGAAGTGGGCCGCGGAGATCCGCGACCCGCGCCGC
GCGGTGCGCAAGTGGCTCGGGACGTTCGACACCGCCGAGGAGGCCGCGCGGGCGTACGAC
CTCGCCGCGCTCGAGTTCCGCGGCCCGCGCGCCAGGCTAAACTTCCCGTGCTCCGACGAG
CCTCTGCCTGAGCACGGGAGCGACAATGGCGGCGGTGATGCTGGCGCCGCGCCGGAGAAC
GAGACTCTGACAACGCCGTCCCCGTGCAGCATGGACGCCGGCCAGAGGACGCCGGGGGAA
TGGCAGCTGGGTGCGGACGACCGAGCCGGCGACCAGCTGTGGGAAGGCTTGCAGGATCTC
ATGACGATAGATGGAGAGGACCCATGCTTCGCGCCATTTTCGAGTCCAGCATAAGTGTAT
TTGGGATCTTGTGTATAATGGTGATTACTACTGGTAGTGATAGAAACAAGCTGATAGAAT
AGACTAACTGAGAACCGTAGTGATTTATTCGTTCAATTTCTTGAGACAAAGCACAGAGTC
GTTACATTTTTTCTTCGTTACATTTGTTAAGCATCAGGAAGTTGTCTCTGTTTTACTTAC
ATTGTACTACTACGAGTACTATTTATCGCCTAGGGAAAGCCTCTCACTCATAATACGTGT
CTCATTTATATCATAAGAATCATAGTATAAGTCACGTATACGTCGACCTGACAAAACTGA
ATACATAACCAAAACAATAGACTTTGCACAAAAGAACACCAGCCAAGAAGTAAATTACAA
ACAACAGTGAGAAAATCTTTACTCGATACCAACGTCTGTCACCTGTCTCTGACACTACCA
CAACAGTCAGTAAAGACAAAAAAATGATGAATCACCTCTACACCCAAGCGCGGCGCGGCT
CCATCACTGATATGCAGCTTTGTGAGCCTTTAAGGTTTATAATTAAAACAAAAAATTGAG
CTTTATAATTTTGTCCTCTCACATGATGGCAAATTTAGGAAACAAAAAAATACAAACGTA
ACTTTAGAAAAAATGTTGTATAGGTCATGGCAAAAAAATTTGGGGGAAGGGGGGGGGGGG
TTATTGGCGACATGGCAAATGTATGCATTTTGAAAAAATGAGCACATGCATGGGCAACAT
AAAACTTTTTTTTTCATGAGAAACTTTCAATCTACTCATCTCCAATCATGGTAGTACAAA
ACACCAAAGGTAATAAAATTATTCTCATACATTTTCCATGTTTTTTGTAGAGAGATAAAA
ATCTAAGTTTTGCCACTTGAGTAGAACAAATGATGTCAATATTGAAAAAGGGTGTGTCTA
GGGCACATCTAGATTTGACATAGGTGTTGCACATATAAATGACTAAATCAAGTATGAGAA
GGAAAAGAAAATGCCCACACGAATCTCCACATAAGATCAATGATATAGGACTTAGATGTG
AAATACTTATCTCATATCTAGACGTGTTTTACCAAAACCTTTAAAAAACATAGTACAAAA
TGATATGAAAGAAACTTGAAAGATTGCTCTATAGATCATGGCAAGTGTAGGAAAAAATGT
TCGATTTGATAGGAGATTTGGGAGAGAAAATCTCATTGAAGATGACGTGTATAAATGTTT
GCCATTGTAATCATAAAATTGCCATAGTTTCCCCACGTGCGTAGAACACTTGATGGCAAT
ATAAGAAAACATAGGTATGACAAAAAACTGAAGAAGAAAACTTATCTATAGGCCATGGCA
AATGTAGGAAAAACATTGTACTATTTGATGGGAAATTGGAGAAAAATCTCATTCGACATG
GCGTTTGTAAGTGTTTGCCAGTGCAATCATAAAATTGGCAATTTTATGATTACAAGATTA
ATGATAATGTTGTTATCTTTAAATCTGCCATTAAATTGTAGATTATTTCTTCTAGTATTT
GCCATATGAGTACTACACACGATGGCAATGTGGTTTAAAAAACTACAACTATGGAACTTC
ACAAGCGTCTTTTTCTGTATCAAATACTCGTATGGTTCCTTCACAAGATGGCTCCTTTTC
TGATGAAGAGATTTCCAATGCTTTATTTCAAATTAGACCTTTGAAAAAGCCCAAATTGGA
CAACTATCCTTCTCGATTTTACAAAAGGAACTAGCGTTGTTTAAAGGAGGAAATTTTTGT
GGCGGTTCGGAATTTCTTTGAGACACTGACACATGCCCCATGAGGTAAATGTCACCTCTG
TTGTGTTGATCCCTAAAGTTCAACGCCCTTCTTCCTTGAAGGTGTTCCAACCTATTTCTG
TATGTAATGTGATTTACAAGATAGTTTATAAATGTATGGTTAATCATTTGTAGTCACATC
TTACTGAGCTAATTTCGGGGAGTCAAAAAACGTCTATTCGTCGAAGCCTTATTTTGCATA
ACTCCGTTATCGCTTCCACCATATACAAAATTCAAATAATTGGGGTATTTCTTTTTGCGC
TTACAAGTGGGATTTATCAAGGCCTATTATCATGCTGACTAGGACTTTCTAGAGTGAGCT
TTATAGGTTGGGGATTCTTCCACCCCCTAGATATCTTGGTCATGGAATGTGTTCGCTCCG
TGAAGTACTCTGTGAAATTCAATGGGTGTCTGTTGGAACAATATTTCCCATCTCAAAAGT
GTTGGAAATATGTCCTAGANNNNNNNNNNNNNNNNNNNNNNNNNTATTTCCTATTTCAAG
ATAATCGTTTCTTATCCATGTTATAATTGT