Map Locations of contig_54005 (9650 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_54005

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67973 2 245 bp MLOC_67973.1 Available Available None
MLOC_67972 3 1466 bp MLOC_67972.1 Available Available LOC_Os07g36460.1, FRAME:+3, EVALUE:6e-82, 13107.m03745 protein helix-loop-helix DNA-binding domain containing protein, expressed





CDS Structure of MLOC_67973






CDS Structure of MLOC_67972






Contig Sequence (9650 bp)

>contig_54005 9650 assembly3_WGSMorex_rbca.fasta
GGGCCTCGACCCCCAGATTGGAAAGGACCGCATCTTGGTCGTTACATGGTGCCACCAAAG
AAGCAAGACAAGGGCAAGGACGTGGTGCCGGCCTCAGAGGTGACGCGCGTCCACAGCCCG
ACCACGAACGACGATGTGCCAGAGGAGCCCCCGAGCGACAAGCACCGGAACTACGACCAC
TACCATAAGGTGGGAGGGCCAACTAACTTCTACAAGGTGATCATGGGCCCCCGGCTCGAT
GCGATACCTATGTCACTGGACTTCATGAAGCACTTCCTGTCCCGGGAGTTCAAGATGAAG
ATGAACACCGGCTGCTCGTGGAGGGTCGTTGTCTGGCAGTTGAACGACAGGGTCACCCTC
GACCAGGGTTGGGTCACCTTCACCGTCGTTCCATTACATCAAGATAGGCTTCATGGCGAC
CTTCAAGTTGCTTACTCCCGACATGTTGAAGGTCATCGTCTTCAATGACGATGGCATTGA
AGTGGTGACTAGGTGCGGGTGGCAGGACGATGCCTTCGCCATGAACGACTAGGACAACCC
CTCGTATGCTCCAGCTACTTTAGTTTAATATCAAACTGCTTTGCGTTTGAACTGATTTGT
TTAAGTGTGACACAGTATTTATAACTACTTACTACTATGTTATGTTATATGTGTTCTTCC
TAACGACTTTGTGTGTTGGTAACCTCACCACCGCGTCGAAGAATCACACAACATGTGTTG
CATGCAAGCACACATTAGGCCTTGTGTTTGCATGTACACAAGTGGGAAACAAAAAAACAT
ACCTTTCGTGATATCCGATGCACCCTAGAGTGTGCACACAACCAAACTAAGGCCGGTGTT
AGTTTTATGTCTGTTTTATCTTAGTCGGGCCTTGTTGACTCCACGAACCAGTCCCGCTAG
GAACGCCTACAAAACACACCCCTGGTGCTTGAGACTTGATTGCTCTTCTAGATCGTACTT
CAACACCCAAAGTGAAGTACAATACTAACTCCTACGTGGACCGGGGTAAAAGTAATACAC
ACTTGTATTCAAGGGGGTTGGATTATCTACAGCCGGACTTTGCAATTCCGGTCCCTCAAA
CGCCCGCGGACGCGCTGATGCGCGTTCACGGACACCAACCAGTCAAGCCTCAAATTTTCC
TTCTCACAAGTGGACACGTCAAATATCGTATCTCAAATCCATACAAACTAATGCAACTAC
TACGTCGATGCATTACACACGTCGTCCGGCTACATCACTACTAACATGCCATCAGACTAC
CAAAATTTGACATGTTTGGCTATGATGGAGATCATTCACGACTGCCATTGCCCTTCGGAT
CCCTTATCGTCCTTCTCATGGAAGTACCGGTCGAAGACGAGGTAGGGATCGAGCCGGGTA
TGCTTGTCGCCAGAGTTGTCCTCGTCGTCGCTGACCTCCTTCGGTGGCAGTCCAACTATT
TCATGGACCACCCGATTCTGCTCTCGAGAGAGGGCGCACGTGTTCCTTCTTCGTCGTTTC
TTCAAAATACGAAAGCAGATGGCTTCCTTCTTTGCGGCCGCCCATGCCGCCGCATCAGCC
GCCTCTACCGCCATCATTTCCTCGGTGATACGGGCCTCAACGACCCTTATCCTCTCCTCC
TCACAGTGGGCAGCCCGTTCCCGATGGGACTTGCAGTCTACCGGACCGGTGATGGGGAAA
GAAAGATTTTCCGGCCACCGGGACCGCGATGATCAGCCCCAGAGGACATGAGTACCCGTT
GAGCTGACACTACGGAATCGCGTTGGATAGATCATGTCGTCGGTCGGGCGCTTTCCTCGC
GGGAGCGGAGGAGTGCAATACGGACCGTCATTGCCCCCTCCAACCCGTAGGGGATGACAC
CCAAGTCGATGGATCCAGACTGGTCGAAGTCTGATCCGCTGCCCGCCGTACCGGAGAAGG
TCGGAGATCGTGGGAGGTGAGTTTGGGTGGCGAATGGGAGTGGAGGGAAATGAAGTGCAG
TGGCTAGGATTTGGTCCAGCAAACGAATGAGGACGGATATATATGAGATCGATGCGGGCC
AGGTCGACGTGTCGGACGTGTCTGGACGTCCATATATCTGCTCTACATTTATGTTGGATA
TGAAGGGTGCTGGTCGGACCGGGTGTTTGAGTCTCGTTTAACACACCGTGGTGAATCGAA
ATTTCATGATCGATTGATGACCCGACGGCCTGTTGCTGTTAGCTCAGATATTCTGGAGCG
AATTGTTTTCAGCACGCCCAAAGCGACCCGCAAACAAATCCAGCCGAGCAGATATTCGGT
AACATAACATCGATCTTTGACGACGGAGGGTGACGGCGGCTGAACGATCTTGATGGATTC
TTCGGACCACAGAAGAGATGGACGCAACAATACATGCGCCGCACTGACACAACACAATAA
CGAAGAACAAACTCAGGGGCAGAGGAACTCCAACGAACGCAAGTATCAACTCAGAGTGTC
CGGTGTACTCGTTGAGATTGAGATGCAATGCCAGAAAGAAATCGGGACGAGATGGAAGAT
AAAAAGTTTCAGAGATCTTGCCGTGTCATTCGTGCAGTACACGAGATATATCTGCATGCC
TTTTGAGAATTCCCATGATCCTGCACAAATGTGCGCGCGCACACACACACACACTGGTCC
ATCCATCCATCGATCCAGCCACATCTCCGGCGTACGTAGCACTACGTCTTTTCGGTTACC
AGATTGCCCAAAAGCTGCAGAGAGAGACTGAGGAGCCCGCCTCCGATCAAATAACGCACT
GCTCGATCTTGCGCCGCAGCATCTTGTACCGGCAAGAAATCATAGGATGTGCTTCAGAGA
TCTCGCTGTGCGCCTGTACCACCCATTTTCGAAATCATGATGCGGATGAGCGCCATGACC
CAATCACACCTGAAACTTTACCACCTTTTCCAGTATAGTAACCGTGAAGAGGGGAAGAAA
GAAGTTGGAGCTCCTGGCTTGCTGCCTCGGTGCAGCCAGTCAACAGCGCAACCAACCGCA
TCAGGTCAGGTGCCGCCGCAACTAACTCAGCTCGCTCACCACCACGGAGGCACGGACACG
AGGAGGGAGGGAGGGAGCACACCATCTCACTTGCGTTGGAGCCCTTCCTTTGCGGTTGCT
TTCCTCCTCACCCTCAGCCCCGTCCTTATAAGCTACCACCACCCGAGGCGCAAGATGCCC
ACAAGGCACCGCACCGGCACCGGCACCGGCACCGGCACCAGCACCAGAGGGGAGGGTGAG
TGAGTGAGAGTGAGTGACACTGCACTGCACGCCGCTGCCCTCTCCTCTCGTTCGTTCGGT
GGGCGACCAGGAGGCACGCAGCTAGACTGATCTTCTTCCTCCTCCCCCAACTAGCGGCCG
GCGAGCAATGCCGCGCCGTCCGAGGGCCTCCCGCGGCGGCAGCGGCGGCGAGGAGGTGAA
GATGGAGGACTTCGTCGAGTCGATGCTGAACCTGGGCGGCGGCGGCGGCGAGGGCGAGGA
GAGCGAGGAAGGGGAGCAGCTGCCGGCGGCGGACGCGACGCAGTACAAGTCCAAGAACCT
GGACGCCGAGCGCCGGAGGAGGGGCAGGCTCAACGGCAACATCCTCGCGCTCAGGGCCGT
CGTGCCAAACATCACCAAGGTGCTTCCTTCATCACATGCTTCCTCCTCTCCTCCACCCAA
CGATTTGGCAGGGCAGAGGAAGTTGCCTCTGCTTCTCCGGGCGTATCTGTCTCGTGTGTG
CGAGCACAAGCAAAGAACGAAATAATCATAATCTTATACAGTACTTACTATAAACTGCTG
CTTCCCGGAGAAAAGTGAAGACTCGGTTTACATTACTGACACTCATTGACCTTGTGTGGT
TTTCAGATGAGCAAGGAGTCCACCCTGGCGGACGCCATCGATCACATCAAGAAGCTCCAG
AACCAGGTCCTTGAGCTGCAGAGCCAGCTCGCCGACTCGCCCGGTGAGGCCTGGGAGAAG
CAAGGCAGCGCGTCCTGTTCTGAATCCTTCGCCCCCACCGACAACATCCATTATCAGGTA
GCAACCCCTGCTATATGAGGCATGAATACCTATACCAGACTAAAAACATAACCGGGCCAG
AACGTCAGTAGAACAACTAGGGTTAATTAACTCGGTCTTTGAGATCAACCATTGCACATG
TATGGAGCCTAATATTTCAGATCAACCAGTTCCAGTGCACAATCTGCATAATATGATTGT
TGAACTCCACCACACTGGTCAATTACTTTTTGCCAATTGATGGCCACTTGCATTTCCTTG
AAGTTATCCAACTTTTTTTATTGCAATATATATGCTTTTAAACATGGCTAAACCAAGGGG
AGAAATTCACACTTTTATTCTGTCTAGTAAAGTAGTCATGTTATTGTTGCCCCAATAAAA
CCCGACTATTTTCAAGATGCCAAGTTTTATTTAAAAAAACGTGATTTTAGAAGATAGTAC
AAAAAGTTTTATTGAAAAAAGTTAGTTGTGATATCCAGCCGATTTCTCGCATGCTAACCG
AGCTGTTCATGTTCCCAGGGTCAGGTAGAGCTGATACCTCTAGGGTCTTGTAAGTACAAC
CTCAAGATCTTCTGGACCAAAAGGGCAGGCCTCTTCACCAAGGTGCTGGAGGCACTCTGC
AACTACAATGTGCAAGTGCTTAGCCTCAACACCATCACCTACTATGGCTATGCAGAGAGT
TTCTTCTGCATTGAGGTGAATCCTCCGTCACAAATTTTGGCTGCAGCAGAATTTGGTAGA
TTCTACGCAACTTCTAGCCTCATTAGTCTTCTGATGCGTTGACCGGCTTCTTCTCCATGT
CTCCATTTGCAGGTTAAGGGTGAGCAGGATGTTGTGATGGTGGAGCTAAGGGACCTGCTG
TCCAGTATTGTAGAGGTTCCAAGCATTTGACCATCTGAGGCCCTTGCAAACAATAACTCA
CGGAATTCATATGAAAGAAGCCATATATGATTCTGTGGAAATGCATCCTCTTTAGAAAGA
AAGAACTCTAGCGTTGCACGGTCTGTGTAGGGAGAGCATACAGAGATACAATGTTGAACT
GACAAAACTGACGGGAAGAAGTCTGAATTTTGTGTTGAAGTTGGAATCATTTCATAATTC
ACCTTTGTATTTTCTACTGTACTAATGGTGTCGGTGGGTAATAAATCATGCATACAGCAG
TCCAACTCAAACTTAGAAAATGGGATTGCCTGAAGCCATTTAGTTACCAGTGACAGTGTG
CCTCCCGAAATTGCAATGCGTGCAAGGACTAGATGCAAAACATCTTTCAACCGGATGTAT
CTATTGTTTACTATCCGAATGTTTTTTTAAGAGACACCCAGGGTTTCTGATATTTAGTAT
TTAGTACTCTGGAATAACAATAGTAGTCACTAAAATGGAAAAACAACTGGATGCTAACCA
AATAATAATAATCAGTGTATGTATATATAAAATGTTACCAAAAACACTTAAAATGTTCCC
AAACGGTTTCATATAAGATAACTTATGAATACTACCTTAATAAAAAAAACTTTTTTTGGG
GGAATCCCTAATATATTTTTCGAATGCATACTTGGATGATATAAATGTGATAAAATTTAA
ATTAGAAATTGGTTATTCCAAAACTAGTGTGAAGTTACAAAGGTACTAGACAAACTCAAT
AAAATCTTACTGATTATCAAGTTTAAGTCACAAAGAACAAATCTCTGTATATACAATATC
CCTAAATACTATCCAATCAATCCATTATCTCTGTATATACTATATCCCTAAATACTACCC
AATCAATCCATTATCAATGACTCTATTAGAACAATCGAGACGCAATGCTGAATCTTTACT
AAAGACGTACCTTTCACGAGGTAAAGAAAATACTGAATCTTTTTGTAAATCTTTACCCCT
TATCATGATAAAATCGCATAGGCCATCACAAGATGCCATCTTTTGTAAAGCAACTCGGCC
TCCCCTTGGCATGGGTGAATAGCTCCTGTGCAACACCTTTGATGCGAATTGGAAAGAAAG
CGATGTAGTTGAAGAAAATAGCTCACATACGACGTTTTAGATGGAAATAATAGCCTCTAT
GTGACCAGGTGGTTAAAACAGGGGAACGGTCGTCAACAGGGAGTGCAGTTATGTTAAAGG
AGGGGGTCAAACTGATCAGTGCATCTGGTAATGGGTCCCACTTGGCAGTGCATCGAGGTT
AACGTTTCCCTGTGATTGAACCCGTGCTGCTCCCCTGCTCTCGGTTGCTGCTCCCTTCTT
CGTTATCGGCGGCGGCGGTGGCGGGGACTATCATTTTGGGCTACGTAGTCGGTGGAGCTT
TCGTTCACGGCCACGACGACGTATGTGGTGAGTGTATTCGGCACCCTAGACCCGCTACCC
TCCGTCTCGAGTTAGATCGGACCAAGTGAGCCTTTGTTTTTTACGGGATCTAGATTGTGG
GGGTGGGTGGCGGCGGTTGCGTTGGACTACCCGAACTAGATGAAGTAGTCGGAGACAATG
TTGACTAGGTAATTTGCACCCTTTCCAACCTACGCGATGTGTGCCTCATCTGCTTCCGCC
GCCTCACACTACCCACCATTTACAAATAGGGGTGATGGTGCTCGGACCTTCCAATTCACT
GTTGAATTCTTTTCATCTAAGGCGAAGCTAGTTGATGGTAGCGTGCAGGACATAGAGGGA
GATAAATCTGTGAAATGGGAGGTTGAATTTGCAGAGATTGATCCACAAGAAATATAGAGC
ATGGAAGAGAGGGCCATGAAGAATGTGGTCGAGAAAATTAACCCCAGTTGCTCTTGACTG
AGCTCTTCCCGTTGAGATTGATCCACTGCGTGGTCGTTCCTCCACGTGAGCTCTTCTCGT
TGCTCCCGACTGAGGGGCTGGGGAACACAGGCGTCGGAGTTGACGTCGTTGTGGCTGCCT
CCATCTCGCGCGCATGAGTTGCCCGCAGAGTACCCACTATCCAGGAGGTCCCATGGCCAT
GTCGGTCATCAAAATCTCTGCAGCATGTCCGCTGCTCTCGCACTCGGACTCATCGAAGGA
GTCGGCGCATGATGGGGGGAACAAGGTGAGGGTGGGTTTGTCGGAGTCGAGCATGGCCAC
ATGTCCTGTCGTGGCTTGAAGAGCCACAACGTGCTTGATCTAGTGTTGAAGTCGTGAGCG
TCCGGAGCACTTGTGACGGGCTACACTGGGATGAGGGGGAGCCAAACGGTACGGAACCGA
CGGTTGTCGAAAAAGGACTATGTATGTTGTCATGCTGAAATGCACCGCGCCACGGGCGGG
CAACGCATCCATGTCCTACGGCGCTTCCTGCAGCCACGCGAATCGCCGGCGACAAAGCTG
AGGGGACAGGGGACCGAAGAGGATCTCATTATCGAGTGGCATCATGATGATTGGAAAAAA
TTTGTATCTCCACCTGCGCCGAATTTTGCTAAACGCATAGCCCATGTCGGGCATCAACTG
GCAAGGAAACGAGCCTGACAATAGTATCGAGGGTACGAGTGAGGGGGCGAAGCCTAGCTA
TGGCACAAATGTAACACTCGTGTGTACGAGCTCAACCCCCTCTAGGAAGAGGTAAAGACC
CTACATCTTGAGCCAAGAGGGCAGTATTTGCTTATGGGGGATGTGAATACACAGGGTGAT
GAACCCTTGTCCAGGAGCATCGGGGCGGCTTATATAAAGTTCGCCTGGACACGTGGCATC
CCATTACAAGGACAATAAAGGCTAATAACTACGAAAGTTACTAGTAACAATAGCTCTAAC
TACATCGTTACAAGTAACGTCGGTCCTCACTACGATATTAAGTCCCTCGACCGTCGCAGC
TCCTTCGTCGTCCACGCTTGTCGACGTCCGAGTGCTGGTGCTCGTCCGACTATCTGGAGG
ACCAGCCAAGTGACTCCATACGCCCGAATGCACTTTGAGTTGCATCAACAACCACGGGCT
TTAATGACCGCGTGGGGACCTAGGTGGGCCCTAGATGGCAGATCCATGACCCTACCCCTG
GTAGGCAACCCCATCAAGAGCGACGCTCGTGCACGGAAGGGGGGCAGAGCGAGTAGGCAT
CGACATGCGGGAGAGGGGAGTGGGATGGGACACCGACCAAGATGAGGGAAGGAAGGAAGG
AAGGGGATCGATCGATGCTGACCGCCGCTGCGGGCTCCCGAGGGGAGGGAGGGGAAGGGA
GGGGAGAGACATTACTTCTTGCTCTGTCCGCATCTCAATACTTCATCCGATCGGACACTC
AAATGGATTATTAGTATGAGTCTATGAATTGTGTGGGTAGGAATGTTCTGAACAAATGTA
GATCAAGTTGTAGTGATCGTCTGCATCGGCAACAAACGTCGGGGCAGAGGATGCAATCAA
GTATGCATCTAATCCGCTTATGATGCTAATATATGATACTATGTATTACGGTTGTGGTAG
CATACATCAGTATCATATGAATGATACTAGTATATGACACTATTCATTACAATCAGCCTT
ATTACTCGGCGAGAAGTTGTTCTCTGGACGGGTACAGGAAAAAAAGTTACTACTACTATA
TCACCGTTGAGCGCTGGAAGATTCGCGCCAAGGGATGCAGGTGAAGCCGACCACGACACC
TCCTCCACGTGGCCAAGTATGCAACGTGGGTCCCACCTCCTTAAGGACTCGGCCACTCGT
CGTCCTCCCTAATCTTCTCCCCCTCCCTCCTGTCTCTCTCAGATCTCTTCCCCCCATCGT
GTCCAACCTACCTCCTCCCCGTCCTGATCCTTCCTCCGCTCGCCCATCGGCGCCAGGTGA
GCCAGAAATCCGCGATCCCTCCCTAGGTTATCTTGCTCCGTCCGCCCGAATCGCCTGCCC
TCGCCGGCTGATCCGCGCGGGCCCTCTGGTCTCCGTAGCTGCGGTGGTTCCGTCGCTTCG
ATCGGATCCTGTGTTGCGGGTGTGATTCCGATCTGATCTGCGTGGTTTTGCAGGTGTGGG
CGCTCTCAGGGGGGGTGGAGCTTGACCTGCCGCGATGGATCGCGCCGAGCTCACCACGGA
GCAGGTCAGTTCACGCATTCGGATACGACTGCCGTCCTGATTTAGTTTTTGCCGGCCACG
AGTGTGCAATGAAACTTTTGCTGCTAGCGTCGGGGTAATTGGGATTTCAAGATGTGCTGC
CGGCGCACATTACCTGGGCGCGACGTCCCATGGAAATAGGACAGTGCGAACGGCTGCCGA
ATTCGAGCGAAAATTGATGCTTTTGTAATGTTGTTTGGAAGTGAGCACATGTTTCATGGA
CCTTCTTGACTTTTGGAATTGAGGGGAGAAAGCGGTTTGAGAATTTTAATAGAAGTAGGT
CATGCTGTCTGCTACTCCGAAGTAGCTAAAGGTAGATTCTGTCGTATTGGTATTTCGAAG
TAGTTTAGATTTTCCATATCCATGCAATCTTTTGTGTTGCAACTTTGGTTGGCGTTTTCT
TTGGTCATGTCATTGTGCTACTCTAGGATGCAGTGAATTGACCTGGTACTGTTCAGACTG
CAGCTGTCACGGTTGGTTTCTTGTTAGTGAATAGATGCCCTGTTTCTGTGTGATAATTTA
AGGTAGGGTCTAATCATTTATTATTCAGTCAAAAGGATGGACAACTGATTGTATGACGGA
CAATTTCTGAGCAGGCCCGTAATACTTGCCGTCTGCTCTTTTAACTAGGA