morexGenes - Barley RNA-seq Database

Contig contig_53954
Source Contig contig_53954
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53954 (6924 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_53954

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67949	1	2954 bp	MLOC_67949.1	Available	Available	LOC_Os03g15320.1, FRAME:-3, EVALUE:0.0, 13103.m01794 protein glyoxal oxidase-related, putative, expressed
CDS Structure of MLOC_67949

Contig Sequence (6924 bp)

>contig_53954 6924 assembly3_WGSMorex_rbca.fasta
CTACCGGCGTCGTCTGCCTCACCGTCGTCACGCACGACGGCCTATGTGGTCTTGAACGAC
GTCGTTGAGCCCTCATGCACGGCATGAGCGACGTCCATCTTGTCGTCGACTCCTGCCTCA
TGTTCTCGGTCGCTCGACGACGACCTTCGCGCTGGAGGCACATGCCCGACGTGGCGCAGG
CGCGCACGCTCCTTCCTCCGATGCCGGTAAGAGGCGACGGTCTCCGTGGTGGAGGAGTGC
TGCGACGAATAGTTGTGGAGCAACCTCGTCCCGCAACTGATGTCCGTTCGGCATCGAAGG
AATCAACGCCTGGTAAGTGCATCCATAACCTGGACCAGCCCAGCCCTGGATCAATTAACT
GCATGCAGCAAGGAAACTGCCAGGGCGTGGTGGCCTTCAATCTATAAACGGCATGCAAGA
ATACAAAAGGAAATGGAAGGACGTGATGGCCATGTCGTATCAATTCGCTGCCTAATTAAG
GCAATGGACGGCCGGACGCCGTTCGTCGGAGGAACGGCGCGTGCGAGGGGCAGCGATGGG
TAGATGGAGACGAAGTAAGCAGTGGCGGTGCAGGGATAGGCCGGGGAAGCGCCGTCAAAG
CCACGTGCGAGTCGTCGCTCTCCAGCGCGCGGGAGCGTGCATTTCAAATAAGCGACGTGC
AATGTCTTTTCGTCTCATGCGTTGAACCATTTATAACGTGCGCGTGTTTTTTACGCCTCC
GCTGACGCGCCCGGAGCAGCTGCACGCGTAAAAGAGTGTATTTTTTCAGCGCGGCGTTTA
TATAGTGCGGCTATTGAACATGCTCTAATTATAGTAAAAGGGTTGACGTTTTCTTTTCAA
AGAGGGAATGGATGGGGGCTGGGTTTTTAACTTTGACAACTTTATTTAATTAATCATATC
TTTTACAATAAAAGGGACCCAGAAAAATCAGGAGTTTTCTCTTTTTTTCTGTCTAGACGA
AAATCAGGAGTATTCTTGATTTCCTGGGGTTCAGCCCGACCAACAACGGCTCCCATTCAT
CGGACCACGCGGCGGGCCAGCCGGCTCCCGTTCACCCAACTGCACGACGTGAAGACATCT
CGGCACGCCGGGTTGTTTTCCCTGGGAGTCGCCGGCATAGACAGACAGCAGCCATTCCTG
GCAGTACCAAGCTGCCACGCACTGCACGCCCGCACTTGGCGCAATGATTCCCGTGACGTC
CCTAGCCACCGGCCGCAACCATCCCGGCCGTCACCCCGCGCGCACACGCGAACGGCGCGC
GTTCTCAGCTTCGAAGTTGCCGGTCTCTCCCACAGTCCCAGAGCAGGAAGGAACGCCGCC
AACAACCCGCTGGATGGCGACAGCGGCCATTCCACTTCGATGCAGCGGCATCAACTCTGT
AGGGCCTAGAGCAGATGCGTCGAGGAGCGTCACGTGAGCCGCGCGCGAGACCCGGCCGGT
TCACGCACGGTACAACAACAAACGAAGTCACGGTATCACCTCACGTTCGTGCGTGGTGAC
AAACAGAACAAAACAATCGGGTCGTGTCGTGCTATACATGATGCATGCCGCCGTGGCCGT
CACTCACTCTATGTGGACCCACACCCCCTCGCTGGGGATGTGCCCGTTCACCACGAACAC
CATGTAGTACCCCGGCGGCGCCAGGACGGCCGTCGCCGGCATCGCCACCGACGCCTCGTA
CGCGCCCGCCGCGCGGTGCAACGCCGTCGTCCCCGCCACGTCCAGGAGCAGCAGCCTCTG
GTTCATCCCGAACGAGTGCGTCGTGAACGACGGCGCCACCATCGTCACCGACACGAGGCC
GAGGCCGAGAGCACCGCCCCCGCCGTCGCCCCGTCTCCTTCTCGCCGGTGCCGCCGCTGG
CACCTCGAACTGCAGGGTCATCGAGTCCCCGTACTTCACGCTCACGGGCGGGCCGGCAGG
CGAGGGGTCGGTGATCTTTGGACGGAGGACGTCGTTGGAGCTGTCCAGGTACTCCGGGGA
GAAGGCCTCCAGGCTGAGCTCTGTCGGGTACTGCACGTTGCTGAAGTTGTAGTAGATGTG
CGGGTTGCTGCCGCCGACCAGCAGCCGGCCGTCCCGGAGGAGGATCGCTGACGAGTGGTA
CAGCCGCGGGATGTCGGTCGAGCTCTGCTCCTCGAACCGGTCTCCGGGCGCGTGGTCGGG
CCGGTACATGACGGGCGCGTAGGCCGGGGTGTTGGCGGCCTCCCACCCGGCGCTGCCGTC
CATGGCGCCGTTGATGATGGCCACCTCGGCGCCGTTTGGCAGCAGGATCATGTCCCCCAT
CACCCGCGGCGACGGCATTCTCTCGATCACCCACGCCGGCGAAGCGTCCGTGATCTTGAT
CCGCCCGCACGTCACCAGCGCCGGGAAGAAGGTCTTCTCCTTGGTCGAGTTGTAGGAGCC
GGCTGGCGCGCCGCCGCAGACCAGCACCTCGGCCTCGGTGGGCGACGGCTTCAGGGGCAG
CAGCACCGACGAGCCCGAGCTGGGGTAGTTCCTGGGGTCGCCGCCGGCCAGCTCAGGGTA
CGTCCGGACGATCTTGTTCTCCCTGTAGTCGAGAAGCACGGCGCGGTTCTTGGCAAAGAT
GAAAAGGTTGCCGTCGATGTTCAGGTGCACGAAAGGGTACAGATTGTTCTCCTCGGGGTC
CCTGGTCTGAACCAGGAACGGCAATGCGATGGCCGAGGCGTCGGAAGCATCGGCCTTGGG
GAAGAACTCGTAGTTGAACTGCCGGCGGCCGCCGACGATGAAGGCGCGGCCGTCGGGGAG
GATCTGGTTGGTGGCGTACCACCGGTTCACGGCGAGCGCGTCCTGCGTCTCGTTCCAGTC
GCAGCCGCCGCCGTCGTCGTCCCCGCCGGCGCACGCGCGCATGGCGCGCACGTTGCGGTA
TCCGTCGTTCCACCCACCGGTCTGGACGAGGGTGCCGTCGGGCGCGACGGTGCCCGAGGA
GCACCAGGTGTCGGTGAAGACGGAGAGCGGGCGGAACGTGTTGGACGCGACGTCGTACTC
GGCGGAGTGCGCGGTGCAGTCGACGGGGAGCACGCGCTCCCTGGGGTTGCGGCGGCAGCG
GCCGTCGGGGAGGGAGAGGTTGGACTGCCCGAAGTCGGTGCGGTCGAAGATGATCACGCG
GTCGTTGTGCAGGAGCTGCATGTGCATCGCCGACACGCCGATGCTGCGCTGCAGCACGTC
CCACCGCCCGCCGCCGCTCGCTGCCGTCGCCAGTGCAATGCCGGCGCATGCGAGGACGAG
GACAAGAACGAGGCCGCGGACACGGCTCCGGATCGGCAATGCGGGGGGATTCATGTGCAT
GGTCGCCCGTGACGATCAGGCCTTGTCCGTATGGTGGTTGACTGTATCCGAATGTTTGGC
TCGTGGGCGTGTATGGATCTGAGCTCGTGACAGTGGCCGCCCTTATATGCACGGACCAAC
GATACAGTGCAGTATTGACGGTCTTTTCCTCCACTTGGAAAAAAAGTATTGACGTTCCTT
CGTAGTCGCGGCCATTATTTTTGCGAGGATGGTTTAATTCTGATATTGATTTTGGGGCTC
GACCCTGTATTAACTTGCTGTTAATGATGTTTTGATTTAGCGGCCCGTTGGGCATAAATG
ACGCAGTCAATCAGTCATCACCATCTTTTCATGAATTCACCAGCTACCACCTGCTAATTG
TGTTGCTCAGTCCCTCCCCCATGACCGGTACCCAAAATCCTCTGCAGATAGGCCCAACCG
TGGGTTCAGGTGAACACTTCGTTTTTACTTAGCAAAAGTACAATGTTTTTCTAGTTAGCG
TTTTGGCTCCTGTATGCATTTACACCTAGATAAATAAAAATATTTTTTTTTAATGAAGTT
TTTATAGATATTCGTGTTAATGTCGCAAGCATGCTTGACAATTTTTATGCGAAATAGAGC
AGTGGTGTTTCGTCGGTGAAAAAACAAAATTAGGTGTGACATTTTCGGGTAACAATTGAT
GTTTAAATTTATTTTTTTGCACATCCTAAAATGTTTAACTTTTTACCTAAAGAATTTCAG
GTACCATTTCAATGTGACAAAGAACAGATAATTTTTCAGATAACATTTCAAAATTTGTTT
TCCATAGGTAGGAGCACGTGCTCCCGGGAGGCGAGTTGCATTTCCGAATATTTTCTCTAC
ATAGTCTATGGATAGAAACTTGTTCCGGAAAAAATCAGTTAAAAGTACGATCGTTTGTCG
AAGAGTACTTCAAAGCCACGCGCACTCTAAAAAACAAAATAACTTAAGAAATACGAAGCT
ACATACACCTTAAAATTCTAATACTAATGATCCCAAGTAGTTCAAGACTCTCAACAACTA
GATGATGTAACCACCAAAAACATAAAATACAACACAAATATTGTTAGCATGACACTAGTG
TATGTGATTAAGGTAGTTCACCTTAGAAGATCCACTCCTTACAAGCACATATGTACCGAA
CTTGGGGGAAAGGGGAGAGGAAGGCTAGGGTTCTAAGGTAGTAGGTAGCCGTTGCCGCTG
TTGTGTCATTTTCTATCGATCTTCGATGCCCTTCCTGAATACGTGTTCCCCTCCTTGTAC
TTCCTATGCGGATTTCAACCACTAGCTATCAATCACTTGTAGATCAATCTTTCTCGCTAG
CCTTGGCGGGTCTTCGGCCGCATCCCCATCTAGAGGCAGAGGACGAAAAAAATTAAGGTG
TGGCAAACTTTGAAGTAATTTTTTATGCAAAACTATAATAGTCAATAGTATACACTAACC
ATGCACATTAATATTTTCATGTAAACCTCAACAGAATAACCAAGGACAAGGAAAATCTAA
ACATGGTTAAATAGAAAAAAATATAAAACATACTGATAACGAATCTAAGTTAGTAACACT
AAATGGTCACAAAAAACTAAAATCATTACAACTGCATATTACAAGCTATTGAAAATGCTA
TTACTACATTTGTAATTTTTTATGAGACATTTTTAGAGTCTATGACAGTGTCGAAAAAAG
TTTTATATTAAGTTAGAGATGGAGTACTAAAATTCAGGGATATACCCCTTCGCTTTGGCT
TTGCTAGCCTTTTCCCTTTCCTCTTCATCTTTTCTTGGATACGACCATGAAGGATACGAA
GCTGGGTGTTAGCTTTTAAAACGCTAGAACAAATCCACCTAAAGTTATATATGTACGTGT
ATGTGGAAAGCTAAGAAGCAGGCAACCTAGCAGATTAATTGATCCTTTTTGGAACGGTGC
ACGCCGGTCTAGCGGGAACCACACGTACATACCCAAGATGATAGGTAGTAGCTGATAACT
GATTGGATTGGTTCGATCTCAATGGAAAACTCGCCGTCACTAGTGAATCAAAAACTCGTG
CCAGCCGAAAGATGCATATGCATAGGTATAAGAACATTTTAGTACTGATTCAAGGTATGC
GGCTGCCAGACCATGCCCATTGGGGTCCTCCGCCAGTGTCCCCATTGGTTTCTATTAGTT
GTGGGGACGATGGTGCGTTAATGTTAGTCACCATAACACGTGCACAAACTTCATATCAAT
ACATCTATATGGCACAAGTATTCTAATAGATTGAAATAATAGTTTTCTTCTTTTTATTCT
TATTATTACTATTACTCTTGATCATCATCTTCTATTCATTTTTTTGTTTCTTTCTTGGTT
TCTTTAGTTTCTATGCTTCTTTTCGTTTCTTTGTCTATTTCAAGAAAAATATTTTCTTTC
TTATTTCTCATTTTTCTTTGGTTTTCTTTGTTTCTTTCTCTTTTTTTCTCTTCTTCTTAC
ATTTCTCGACTTCCTTTTCAGTTTTTACGATTTTCCAAATACACAATGTACATTTTCTAA
ATACAAGTTTCTAACATTTTTTAATAAGGCGGTATATAATTTTCGAATACACCGTGAACA
TGCATTTCATGGGAATGAACATTTTTTCACACAAAATATACAATTGTTCTATACATTAGA
AACATTTGTATATACATGTTTAACATTTTTTAAGTATATTCTTGTGATGTCTACTTTTAT
CCAATTTATATTCTATATTTTTCATATACACAAAGAACATTTTTTTATAGACGTTTACTA
TTTTTTCATACATATCATATATTTTTGATTTACATTTTTCATAATCATGAGAAAATAAAC
TACATAGATTTTACATTTTCAAAGGTTTGGTTAAAATATGTGATCAACATTTTTGGATAA
ACATTGTATATACTTTGTATACATGAGAAGCATTTTTCTATACATATAACTATTCTGAAT
TCCTTGATTAAAATTTTCTAAATACATTATCAACTTTTGTCATATACATTGTATACAATT
TTTTTTCACATGAGAAACATCTCTTCCATAGACATTCAATATTTTTCAAATGCTTGATTA
ACATTTATCAAAAAAACATAGAATTTTTTGGTAATATATATTTATAATATTTGAAAATAT
AAACAAAAGAAAAAAGGAAGCATAATGGGGAAAATGAAAAATACGAAGACTGCGGCATGT
TGCCTCTTTAGATGGACCGGACTAGTTTTGCGCTCGCCTTCATGCGAGGCTGCCCTGCGT
CACCGTGCCAACTATATCTTGCCTTAAACGAGATGCTAGGATGTCTCCATTCAGCATCTA
CACTTTCGGGCTGGACCAATAGTGGTTATAAAAGTAATTGAGAAGAAAAAGGCGAGATAC
ATAATTCGATCCTAGGTCTTCGGACGACATGAATCGGTGCTAAGAGCATCTCTAGCCGAT
GGAGTAGGAAAGCATCCGACAAAGTAACCACCCGTTTACGAGATGAGAGCGTTTTTTCCA
CTTCGAATAGATCCCGTGAAATCATGTGTCCTGTATTCTTTTGTGGGAACCAGCATATTC
AATGTCTTTTCCTTTGTATCTACATGATTGGAGGAAAAAAATCACGGACCTAAAAAATAA
GAAACGGTTGACGGGGGGGGGGGG