Contig Data
morexGenes
Links



Map Locations of contig_53920 (8472 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_53920

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67933 2 4311 bp MLOC_67933.1 Available Available LOC_Os09g38090.1, FRAME:+2, EVALUE:0.0, 13109.m03789 protein expressed protein
MLOC_67934 2 1218 bp AK360530 Available Available None
MLOC_67931 1 628 bp MLOC_67931.1 Available Available LOC_Os09g38080.1, FRAME:+2, EVALUE:1e-66, 13109.m03788 protein retrotransposon protein, putative, unclassified, expressed
MLOC_67932 1 150 bp None Available Available None





CDS Structure of MLOC_67933






CDS Structure of MLOC_67934






CDS Structure of MLOC_67931






CDS Structure of MLOC_67932






Contig Sequence (8472 bp)

>contig_53920 8472 assembly3_WGSMorex_rbca.fasta
TTGTATCGTAACTATAAATTCTCAAATTATAGACATTTTTTATAAATTAAGAGTGTGTGC
CGTGTGGTATTTCTTTCTCCCGTTGCAACGCATAAGCCCTTTTGCTAGTGATGTAAAATA
GATGGAGGCTACTTTCTACATCACGAGAGGGCAAAAACACTGCTTTAACAGTTAGAGCAA
AATTTGCATCACCAAGTGCTATTTTTACATCAACAAGTGGTCCAACAGAAGATGTAAAAT
AGGACACCCACAAGAAGACTACCATGATGTATTTTCCAACACCTATATACATCCGTTGGA
GTTGAAGATTTTTGGTGATGTAAAAATCACCTTTTGGTCTTGTGAATTTTACTCGAAGCA
AAATTTAGTTATGTATTTTACATCACTATTGGAGTATACTCCTGGCATACGTGATTTTCA
CTAGGTGTATTACACATTGAGTATTTTTATGGCATGTTACACATGTTTTGTTAGTTAAAT
TGAAGAGCTAAAAATACATGTCTGACATACAAATGCGGATGGAGGAAATGAACCAAATCA
CGCATGGTCCAAAAGTGCATTATATAATGCCCTTTATCATTCAGAAGTAAGTAATTTATT
TATTTGAGAGCCAATAAAGAAAATCGAATAAAGGAAAAAAGTTTGGGGTATCTGTTCGTG
GGCTTAAGATGCTACTATATCTGACTTTACTAGCCGATCTACCAAGCCCAACAATTCTGC
TAAAAAGAGTACCAAGCCCAATAAAGGAGCCAGTTAGTCCAGAACTCCGACTCCAGCGAC
ACGTCACCTTTTCGAGGCAAAGCAAAACCAAGCCAAGTATCCATCCAATCTAACCGGCAA
ACGCAGCGACGACTCGCCGGAGAAGAATCCCGTCGGGAAATCAATCCATCGGAGGAGCTT
CACGATGGCGGGGGAGGGGAGGCCGGACGCGCAGCTCTTCCAGCTCCTTACCGACCTTCT
CCAGGAGGTACGTACGTGCGCGCGCCGTCTCGATCCGCGTCCGATCTCGATTCCTCGCCG
GTCGGCCGCCGTCGATTGGAGCCTGGCTTGACGGTTCCCTACCAGGAGGATCCGTTTGCT
CCGTTAGGAGGTCCTTCGTTTCACGGATCTGGTCGGGATTAGAGGGGGGGACGCTTCTGC
TATTGCTTACAATCGTTGACACTACTGTATTTGTATCTCATAAGGCCCATCTCATAATAT
TAGCCAGAATGCCCAAGACCCAAGTACCTGTACTAGCTTACCTGGTCTTCACTCAAAAAT
CGTGAAATCAGCAGTGTTTGTATGTTTGTTTCATCGTGTGCTGATTTGCAAGACAGAACA
GGATAGCCATAATCCCCATCTAGTTCTCTCCGACTACAATTATTTAGGCATGGAGGGAGT
ATTTTGCATTGTTTTATCAGAAACTTAGCGACTATTATGGGTATCTGTGTCTAGCTGTAT
CTGAATATTGGCAATGCCATGCATGTGATGCTTTGTCTCATAATATATATACCAGTTCAT
TGATGTTGTCTCTGTTGATTCGGACACTTGTTATGCAAAAACTGTTAGTTTACTCTTAAT
CCTCAGTTTCCTGGGTATATTTCTTACTTCAGAGAATTCAGCCTCGTATATTTTCCATGG
CAGTACTGCATTTGTCTTGTGGTGATGGACTCTTGAGTATAATTACATTGGTGTCTCCAT
GCATCTGCATCTACAGTACTTGCTGTCTCGAGCTGTATCTGAATATTGGGAATGCCATGC
ATGGATGTTTTGTTCCAAAATTTGTAGTATACCAGTTCATCAATATTGTCTCCTACGATT
CACCTCAGTTTCCAGAGCATATTTTTTACTTCAGACAATTTAGCCTTGTATATTTTCCAT
GGCAATACGGCATTTGTCTTTTGGTTATGGACCCTTGATAAATTAACAGGTTTTCAATTC
TCTTTTGTTAATATATGTAGGTGGAGTCAATGAGCAACCAGGAAGAGGTAGAATTGAGAG
CAAAGATTGAAGCGCTGGGCCTAGAAATCACCAAGGTTCCAGAGCAGGCACCTAAGCAAC
TTGATGAGGTAACTGCAACACTCTTACCACCACATCCTGCTGTTCCCCATTCCATGAATC
TATGTTTTATTATCTCATTAGCTTTGGCCCAACTCTCTCTTCAGTTAGAGATAGCCGCAG
AGCTGGACAGGTTGTCGGCAAGGCTCGATAATGTCGACAAGATGATATCATCTGCCATTA
CATCTGACCCAGAGGTGAAATCGCTTCTGAGCAGCACCTCCGATGTCTGGATGCCCGTCA
TCACCGCGTCCGCCAATGAAAGGCGGGGGTTCACGGGAACAAGCGGCGACAAGGAAGAGC
AAGAGAAATCTAAGTAAATAGCTGGGACTGAAGCCCTTGTACTCCTTTGTGCCTGCGTTG
TTCTGCATTTTCCTTCCATGAGTATATGTTCATAGCTTCCCTCCGTCCCAAAATTCTTGT
CTTAGGTTTGTCCAAAAATAGATGTATCTAAATACTAAAACGTGACNNGATACATTCATA
TCTAGACAAATCTAANNNNNNNATTTTGGGACGGAGGGAGTATGTATCAAATGTTCTTTG
GGGCAATAACAGAAAATAAATACACATGTTGTTAATGTACTTGCTATTCTAATTCGCGCT
ATGGTTGAGGTAATAAAAGTCTGCCAAGCATTCTATCTGGCTTCCAGTTCCCTTTTTGCC
CTTCAGTTTCAAAGCTGCACCTGCACTGCAAAGTTTGTTCTAGAAATGCATTGCACTGTG
GTTGTAGAATGTAGAGAGCATAAGCTTTGTTTGGGGTTCATTTGCCATACTTTGGTTTCG
ACGGACTTTTTAGAACGATATATTGGCCGCAAGAATGTGCTTCAGAACAGTAGTGGTTGA
CACACATCATCTCCACAGTGCACCATCTTAAAAATGCAGCTAATTCAAAATTTTGAATCC
TACTTTAGTCGAAAAGGCGGTGCAGAACGGGGCAATCTGGTCTTTCACATACGTATTAGA
GAGACAAGCTTAGAGCATTATCCTCTAAAATCTGTGCTATTTATCCAATCACATGATCCG
TTGGCTGCTACTGAGGCCAGTAGCTTAGCCTCTTGGCGCGAAACCAACGACCGGGAGAGC
ACCACGAGCTCAAATCGACGGTGGCCCGGCCGTACGTCGGCCCTCCTCCGCCACCCGCTC
CCCTCTCCCGAGTACCTCCAAAGTTGTCACCAGCCATCCATGGCGACGCCCTCCCGTACC
ACCGCCACACACTTCAACCGTCTCTTCCCTTCTCTTCTCGTCTTATCCACACTCACTCTA
GCTGCACCACACTACACCACGTGACCTCTACGCCTGCGCCCGTCTTCACGAGCTGCTTGC
TGGCTAGCTAGGTGGCGCGCTGCCGGCGAGGTGATCGGGTCGACGATCGCGTGTCGCCGC
AGCCATGGCCGACGACGGCAAGCCCCGCGACCAGACCCTCCAGGAGCTCGACGCGCTCAG
CCACACGCTGTACCAGGCGCACAGCAACCGCCGGCACGCGTCGCTCGCCCTCCCGCGCGG
CGTCGCCGGCGAGGATGTCGTAGCGGCGGAGGCGCTCCGGGCCGAGGCCGCGCGCCCGCG
GACCCGCCGCCTGTCCATGACGTCGCCGTTCCGGTCGAGGGGCAAGGGGGGGAAGAAGGA
GGAGGACGATGACGACGACGACGACGACGACCGCGGCGTGCTGAAGGCCGCGGTGCCGTC
CAAGAGCCGGAGCTTCGCCGCCGCGGCCTCCCAGGCGCTGGGCGGCGGGGAGAAGAAGAA
GGGGTTATGGGGCTGGAAGCCGATGCGCGCGCTGTCGCACATCGGCATGACCCGCCTCGG
CTGCCTCTTCTCCGTCCAGGTGGCGGCGGCGCAGGGCCTGCCGTCGTCCATGGACGGGCT
CCGCCTCGCCGTGGCCGTGCGCAAGAAGGAGTCGCGCGAGGGCGCCGTGCAGACCATGCC
GTCCCGCGTGCAGCAGGGCGCGGCAGACTTTGAGGAGACGCTCTTCGTCCGCTGCCACGT
CTACTGCAGCGGCGGGGGCGCTGGCAAGCCGCCGACGAAGTTCGAGCCCCGGCCGTTCCT
CCTGTCAGTGATCGCCGTGGACGCGCCGGAGCTGGACTTCGGGCAGAGCACGGTGGACTT
GAGCGCCCTGGTGAAGGAGTCCACGGAGAAAAGCCAGCAAGGGGAGCGCGTCCGGCAGTG
GGAGATGGCGTTCCCGCTCACTGGCAAGGCCAAGGGTGGTGAGCTCGTCGTCACGCTCGC
GTTCCAGATCATGGAGGACGGCGGCGTTGGGCTCTACAGTCAGCCGGCCACCAAGACTGC
TGCCTCCTCCTCTACGTCGTCGGCGTTGTTTGCCCGGAAGCAGAGCAAGACGTCGTTTAG
CATCGCGAGCCCCAAGGTCACGCGCTCGGAGCCGTCATTTACGCCTGCGAAGGCCACGCC
GTCGCAGGACCTGAGTGGCATCGACGACTTCAAGCTCGACGGACCTAGTGCTCCGGCGCC
CGAGCCCAAGCAGGAGCAGGAGAAGAAAGAACCGGAGCCGCAGCCAGAGCCGGAGGCGAA
AGTGGATGACTCGGACTTCCCGGAGTTCGACTTCGACGTCGTTGACAAAGGCGTGGAGGG
GCAAGAAGAGAAGGACGAAGCGAACGCTGACATCAAGAAAGAAGACAAGGATAAGGAGGA
GGAGGAGGAGAGTTCAACGCCGGCGGCCGGCGATGAGGTGGTCAAGGAGGTCGTGCACGA
CAGCGCAAGCATGTGGCGCCTCAACGAGCTCGAGGCCATCACCAATCAGATCAAGGCGCT
CGAGTCACTGATGCTCGGCGACACGCCGGAAGAGGAGGCCGACAAGCCGGCAGAGCAGCA
GGAGGACGAGGCGGCGGTGGAGGGGCTGGAGGCCGACGAGGAGGAGGTCACGAGAGAGTT
CCTGCAGCTACTGGAGCAGGGAGAGGACAATGGCAAGTCAGCGGCCGCTCCTCAGGTGTC
ATCACTCAAGTCCAACGCGAAGCCGGGCTCCAGCGCCGACGAGGCTTGCTACGTCTCCGA
TCTCGGCAAGGGGCTCGGTCCCATCGTGCAGACCCGCGACGGCGGCTACCTGGCAGCGAC
GAACCCGTTCGACATCCCAGTGGCGAAGAAGGAGCTCCCCAAGCTCGCCATGCAGCTGTC
CAAGCCGTTCATCCTCCGTGGCCAGAAGCTCCCCGGCGGCGGCGCCGAGGTGTTCCAGCG
GCTGTGCGCTGGCGGGTGCGAGGCCCTGTGCGCGAAGCTGGCTGCACTCACCGCGACCGA
CGAGGTGGTCGGCAAGACGGCAGAGCAGATTGCCTTCGAGGGCATGGCGTCGGCGATCAT
CAGTGCGCGGAGCAAGGAGCTCGGCGCGAGCTCCAGCGCGGCCGAGTCCGTGTCTCTGCT
CCGGACAATGTCGGCCGCGATGAGCGACGGGCGCAAGGAGAGGATAGTCACCGGCATCTG
GAACGCCCATGAGGCGCCGGTGACCGTGGACGAGATCCTGCCGTTCTCACTCCAGAAGAT
CGAGACGATGGCGATTGAGGCGCTAAAGGTGCAGGCCGGCATCGCCGAAGACCAGGCCCC
ATTCGACGTGTCCCCGGCCACTGATGCACCGGACGCTGGGCATCCCCTGGACACCGCCGT
GCCGCCGGAGGAGTGGGCGAGCGCGTGCGCCGGCTCGGACGCGGTGACCATGCTGGTGGT
GGCGCAGCTGAGGGATCCCATGCGCCGGTACGAGGCGGTTGGCGCGCCATCCATCGTGGT
CATCCAGGCCGGACGCGCCGCCACCGGCGCCGACGGCGAGCCGAGGTTCAAGGTGGCCAA
CATGCACGTGGGTGGCATGCGGCTGAAGTCGGCTGACCGGCGTAGCGTGTGGGACGGCGA
GAGGCAGAGGCTGACGGCGACGCACTGGCTCGTCGCATACGGGCTCGGCAAGGCCGGCAA
GAAGGGACGGCCGTCGGGGTCCGGTGCGGCGAAGGCCGGGAACGACATGCTCTGGAGCAT
GTCGTCGAGGGTGGTCGCCGACATGTGGCTCAAGCCGATGCGCAACCCGGACGTGAAGAT
CGCAGCCAACTAGCTGCCGCTGAGGTACTCCTCCGCTCTGCTACCGAAACACTTATATTC
CACACGTCCAATTATTTACTGAATTCCTGCACTGTAATTTGTAACAGGAAAAATGTAACC
GTCGATGTTTTCTACCTACATTTGGTTATGAGAATGCTGTAAGTAATTTTTGAAATAAAT
AATATAAGTATTTTTGTACAGGACACAGGAAATGGGAGCCAACACTTGCAGAACTGCAAT
AGTAGTTCTAAACATAGTTTAAAAAACCGAACCAAAAATCGAACCAGAAATGAAATCGGT
TCAGATTTTTATCGGTTGGACCGCCGGTTCACCTGTTAGAATGTCGGTTCTTTAAGCCAA
AGAAATAATAAATATTGAAAAATATATGTGTTAATATAGTGTGAAACAATGATCAAATAA
AATTATTTTCATGTAATGAACAACAAAGTAATATACCTGAGTTAGTTATAGGGTCGTGGG
AAGGCCTCGCGTATTGCTCACACAACCTGGAATCGAATCCCACTTCTTCCAATTTCTATT
AAAATATTTTTATGGCTTTTTCTATTTTAGTGAGCCGGTTTTCACTAGTTTCCAAAAAAC
CGGCCGGTTCACCTGGTTTTCTCCGGTCCGATAGCAGAACAATTTTATTAGCTTAAAGAA
TCGATGAGACTGTCGGTTCCAGTTTTTTCCGGTTGGACCGCCGGTGCGGTCCGGTTTTTT
AAACTAGGGTCCTAAATGTTACCCCTAGAAATACTGTAGATGGCTACTTGCAAGAGAATT
TGACCACCAAAAAGAAATAAGGAACAGTAACATCACACATAATATTATGGTTCCAGTCTT
TCATTCTTCACAAAATTATTTACAATGGATCTATAATCGATCGTTTGCTTACACAACAAA
ATGACATTTTTTCTCACACAACAATCTTCGGATGGAGATACTACAAAGCATCCTGAATAC
ACCACCAGGCTGTATCATGTGTGCCAGAGGGGTGCTGAAGTTCATGGACTTATGGTTGTC
TAAGATGCATCTAGAACATACAAATCCTTCGTACGGTCCAGTTAGTTGTTGTTCCCTACA
ACTACAAATCACACGCACACTCGCCATAATCAGAGAGAACTCAGAACTGTGGGTAAAATA
CTTCTGAGTGCCTCTGGGAAATAAAGAATGTATCGGTAAACTTTTGAAGAACAGGTCATA
TCATGTGTCAACATTTTCCAGATCACGAGGAATCCCTCCACTGGGTGGCCTGAAATAAAC
ATATCAGCACAGAGAGCTTTCAAGAATGTACAACAGAAAATACAGTCTGTAGATAAGAGC
TACCAACAACAGAAAATACATTATGTACATAAGAAGATAAGCAAATTGTTTCAGACATCG
AAGTGCAGACTTACAATCCAGTAAATATCTTAATGGTATCGTAGAAGAACCATTGCATGG
TCACGACAGGCCCTACAAGGGTAATTCGAATGGGCAGGCTTCTTGTGAACAGCCCACGCA
ATCCAATGCTTTTTATAGCCTGAAAAGGATTCAATGTGATTATTAAAGGAACAGAGTGTC
AAGACTTGGAATTAACTAATTTGTTGGGTGGGCAGGTACAATCGCATCCTTACATGTATA
ACGTTTTTAGCCTTTTTGTTGTACAGAGAAGAAACGATGTTATCTGCAGGATTTGAAACA
ACAGTACCAACAGCACCAGAAATATATCCAGCCAAGCACGTGGCACCAAGCTGCTGCGCT
GTTGAACAATCCCGTTTCTTCTTTTGAATGACTTTCTGGTATAGGAAATCCACGGTATGC
TCAAATGACGAAAACATTATCATAGAAACTGCAGGAAATAAAATTTACGATAAGATAAAC
CTGTACATGTCAGAAAAAGGTGATGCACGCATGGACTAATTAACTTGGGAAAGGTTCAAT
TATAACATAAAGATAACTTTCCATGTATCAGAAGCAGACTGACTGTCATTGTTCCTAGCT
CACTGAGTAGAACAAATGACCACCACAAGACAAAAGGTGGACACAATTGTGATATAAATG
CAACCTGTGTTTGCCTCTCACGCTAAACTCATGGAGCCCCTTTTTACAGTTGAAGCAACA
AGTACTCCCTCTGAAATAAGACTGTTTAGCACACTACGTATGTTGCTAAATGGTCTTACA
TTTCTTTACAGAGGGAGTACCTTTTAATTCACTCTGATAAAATCGGGAACCAAGCAAGAT
TTAATTCACTCTAATACTGCATAGCTGCAACTATTTTTAGAAGAACATACCTGCACCATA
TATCTACTCCCTCCGTCACGGTTTAGAAGGCACAGTTATACTTGCGTGCATTTCCAAAAT
AGACAAGGTTTAAGGCGCGAAAGCAATTACTTCTATTAATTAGTAGTAGTACTACTCATG
CATGCGCCCTCC