Map Locations of contig_53891 (10466 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_53891

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67910 4 2110 bp MLOC_67910.1 Available Available LOC_Os12g40790.1, FRAME:-2, EVALUE:1e-138, 13112.m04245 protein zinc finger family protein, putative, expressed





CDS Structure of MLOC_67910






Contig Sequence (10466 bp)

>contig_53891 10466 assembly3_WGSMorex_rbca.fasta
CTATACGAAGTTAGTGATATCATGGTGCTTTTTCTAACCACAAGTATGAGAAAAAAGGTA
ATAGCAATGTCCATTCTCTCTTTTCTCTCATTTTTTTCATTCGGAGTCTCATCCCGACTT
GTGGGGCAATCATTGTCTCATCACATTTCTCGACAAAAGAACAAAAAAAACAATGTTCCA
AAAAGAGCAACTTTTTAAAAAGCACTTCGGAACATTGATTATATTTTCTATCCAAACCTC
CACAATTGTTTTTTCATCACATAATTTTGCATGTTAGTAAAACATTCAACAATGATTATC
TAAAAAAGTCAGAAACTTTCAAAATGTTTAATCTTTTTTTAATAAACTACTGTTCATATC
AGGTGCATATGCACCCAGGAACAGAACAGCACTTCTCAAATTCTTTGGCTTCTGATTTCC
AATCGAGATATAAATCGGACCTATTACTGCAAATGAATAATACTCCAGTGGAAGCGACGA
GGCGCAAATCAAACTAAACCATCAGCCATTGGCATGACGCTCCGGTGCAGCAAAAATTTC
ATACAGCCCACCATTCACCCCTTCCACGCGAAGGTTGAGAAACATATCATCACTCTATCC
AGCCTCAAGCCTCAGTCAACTTTCGCACAGTTTCAAACAACAACAAATTTCATCTGTATA
TAACAAGGGTATGAACCGAACTAGGGGAACAACAAATAAACCCTGAGAGAGAATCCAACA
GCATCAGATCAAGACCAACAAGGTGGGCTGGCTGCAGACCGAGCCAGCCACATTCTTTTC
AGTATATGTCGACAGGGAGAGAACCCTTTTATCTGTCGAGGACCTCTTCCCAAGGCAAGG
CGCAACCCTCCTTGCGCATCAGGAGATCGCCTGGAGCAGCATGGTGCGCTCAAGACTTTG
GCCGCCCATAAGTTATCACCATCACATAGTCTCCCCCAGAGGAGCCAACCGACGTCTGCA
AATGGCGCGACGGGCCAACCCTCAGCCACCTATCCATCAGGTTGTGCACAGGTTGTATAG
GGTTTATTGACTGCCCACAGCAGCTCAGTTCAACCTGTAAACACCAAGATCAGGTACTGT
TCAGACAAGCTGTGGTTCTGGACTCGAGAAGAATAGACTTAAGATGGATAGCTAGCAGCA
GTAAAGTGATAAGAAATGCAGGTAAACATCAGGTGAGTTTGGACTTCTACTTCTAAGATG
AAACTTCTACTTTTAAGAGCGACCCAATATCTACACTGATTCCACTTTCGAAAAATGTGT
GTTCTTCTACAAATTACGCTCATAGTTTTGGACAACTGGTAAAACATTAAGCAAAGGGCG
AAAAATAAACCAACAATACTGTAAAAGGTAGAACTCTCACCTCAGACTCACTTCCAAGAC
TGAGCTTCTGCATAATGTACCTTTGGATGGATGATGCGGCTATACTTCCATCTCTATCAT
TAGAAAATACATTAACCATGACCGAGAAAACTGAAAGATGTATAGCTGAAACATAACATA
AGAAACTGCTGATTGCAACAATAAAAATGTAAGTGACCGCACCTACAAGTGGAGAGACTA
AGCTAACAATCAAGCTATGTAAGTTGACTGTATTTTCTATTTTGTTTTATTTTACTTTAT
TATATGCCAAAAATGTTAGATGTGTATTTACAGGAGAAAATTTTGAACTTCACTTGACTC
CTCAGCCAAGTTACTTACGCATTGGACAAACGGACTAAAGTGATCAGGAGGTGGCAAAGA
ACAACTGAACAAGCTTATGATTTGTGACAACTGCATTACTACAAAACCATAAAGGAACGC
TTAGATGTGCAGATATGCTTATCTCCAAATCTATGAGCTAGACAAAATCCACAATTATGA
ACTGATCACCAATTTCCACTGCAAGGATATATACTTTGAAACTGGAACTAACTAAGATTT
TGCAAGTGAATGCATAGTTGCAGCGTACTATCGCCTAAGACCATGGCATAGTATCTCTGG
ACATAGTTTTCTTCTATCCAAGTTATTAGCATCATTTCCTTACTATTTTACAGCTTTCAT
GCTATTCCATTAGAAACATACCATAAAAGTTAATACCTAAGTGCCAAGAACATCCATATG
AAACGTGGATTTAAAGAACTGTTGTGATAGATAATATCATCTGCAGCAGAACTGAGGAAC
ATGAGCTTACTTTATTCTCAAAAAATGGGCAGGTATCTGTGGCAAGGGTGGGTCACCTTT
CCTGAAAATATTTGAATGACAGAAGATCAAGGGGGAGGTGGGGGACACCTAAGATAATGC
TTTCACTGAATTGAAGATAATTGATACTATAATCATGACTTACTGCTCAAACGAGGCAAT
CAATGAGAACCATACAGGGTTTAGTGCCGTACTATACTGGTCCTTCTGGATAGCTGCAGC
AACAGAAGTTGCATTCTTCGTCCGGCCAGGCCCTTTCTTTTTAAGCACTACTGACTGTGG
AGCATCTTTCTTGTCATCTTGAAATCTGGTCTTCCGTAGATTCTCCACAGGCTTCTCTCT
GCTAGCCTGTTCACTACTAGGAGATCCATTGGGCTGATCTCCCTTAACAGATGAACATGA
CCTGAAGGACTTTGTTTTGCTTGCAGCCTCTACAAGACAGTTTAGAGGTTTCCAGAGATC
TGCCTTATCCAAGTCCTTATCATCACCTGCTTTATCTTTATTAGAGTTATGACTTGACGT
GTCTGCAATCGATGATGCCTGCAAATAATAACCTCAAATCACTGCTACTGATGAGAAGAT
GAACAGAATCTACGTAGCTCATGCAAAAACACAACTGCAAAGTAAGAGAAAAAAATATGT
AACAGCACATGATTCGGTCAGGATGCTACAGTCTTTTTTACCTTCCTTCTTGTTTGAGGC
ACTTTGCTCAAGCTGTCCAGCAAGCTTAAATTATCAGGATGCTTATTGGCGCTGCCATTA
TCCCTTTCTACAGGATCAAGGATAGGACCAAGGCCACGTAATGCAGCCGCAGCCTTCCTA
GTAACGGCTCTTGTTCGGCGCCCAGTCAAACCCGTTGTTATTCGAGGTGTATCAACCACC
AATGAAGAGATAGACCTCTCTTTCCTTTTAATAGGCAGTGAAACTGGAGATTCTTTAGCA
TCGATCTTATTTCTTTTTAAAGGAAATATTTTTGACCTCACGTCTTGTTTATTGTGATCG
GCTCTGAAATCAAGATATCAGAAATGAATAGAAGAAAAGGCACAACTTTAGAATGTAAAA
TAGCATTCACAATAATAAAAATCCCCCAATTCAGAAGGGCTACATGATAAAGTGCCTATC
CTAGCAGGAAATGAGGGAAACAGATACTCAATTTAAAGTCAGTAAACATTACATACTCGA
TCTCATTGATCCCTATAGAATTCTATTTAAAAAAATATAAAAATGACCTCACAAGAAGCA
AAACCAGAAAAATAAACTATGCAAACAGCAGTAGCATCTTACACGAAAAGCAACTCATTA
CTACAGACAGAGTTACATTTTGCCAGTACACAGATCAATATAAATGGTTTTCACCATAAA
CAAATGCTTCAGAAAAGGTCTTGAAACAGAGGTATAACGACAGCAAAGTTTTGGTATTAG
TGGCACTTAAAATGGTACCAGTTGACTATTGAAAACACAAAATGCTGCCAGATAAGAACA
CTAGAGGTCAACTGTGGATACATATATTTATAGGTAATTTTTATATCATGCTTAGTGGAA
TATTCTGTTCCACAATGAATTGTCGTAGTACGAACCTCAGACGGAAGTATATTTCTAACA
TCATATAAGAAAGTTCACCAAATTGCAGATGTACAGTTCATTGGAAAGGACGCTCCTATT
ATGCAGGGGTAACATACATATATTCCAGCTTATTCAGGAAGCTGGGTAAGCCGTTTATAC
TGCAGATTTTCTGATTTTCTACGCTTCTACTGCTATTGACTACCTTCAGTCTGTGGTTAA
TTTCAACTATCTGTCCGATGTTTCAAGATCAAAATTTAAGTCTGACATCTTTTTATCCAA
TGGAAATCGATGCTAACAGTAATAAATCAAGAGAACTTAGCGGCATTATGATACTGAAAG
ATGTACAAGAACATTTGGCAAAGGAAACAGTCTAACAGAACAAAAATTTAACTGCGTACA
GTATCTCCCACCCAAAAATATAAGATCAGGAGAAGAATACCTAAGCTTCTCAACTGGAGC
GCAGCCAAGGTCAATTTTACATACTGGACAATGGTCAAGCTCTTCATCATTAAGCTTCTT
ATAGATACACTTTCTACAAACTGCATAATGCCAAGAAAAAAGTTCAAAATAGTGAGGACT
CAAGATGTGTGGATTTCATAGCATTGGTGCTTCATTAGAAAGGGGTAAAGAAACTGCAGC
ATTAAAATTCATTTCTATGGAGAACACAAAGAATGCTCTGAAGTGTGTGTACATCATAGA
AGAAAATCATGCATGCAAATGAATGGAAACCTGACTCTAGCATTGGCCATATAGCATAAA
ATTCCCCAAAACTGTTACAATTAAACAAAGGAGGTTGATCGACAAAAATATCATCAACAA
TGTTTTTAGAACAAAAAACTGGACAGAAGAAACATTAGTAAACTCTTGTATCCTGCAGAT
TTAAGCAAAGCAACAGGATGTGCACTTTTTTCATTCATCAGAAGTAAAAATGGAGATACT
ATTTCTATCAACCAATATGGAACTGTTATTTACTTGACATGCAAACATGCCAATCTCAAA
ACAAAACAAGAAACAGAGCTTATTTTAGAACAAGGCTACAATTGGCTAGATAAAATGGTG
GTGCAGCCATAAGAGATGTTACAACAAGGAGACAGATCCCAAGTGATACTCACACCCTAA
GAAAAATCAAGTAAAAGGAAAAAAGCATAGCAACAGATGTGACTATGTGATAGATCAGGT
TCCTGTATCATTTTACTGCATGGATTTAAAGCTTGAATCATCTGCCCAAGAGATAACAAT
TTCACTCCTAACATCTAGCCAAAGTGAAAATGAAGTAATTACAAACGCCAGAAACAAATC
AAGTTTCACAATATCTCAAGGGCACACACGATATGAACAACTACATTTACTTAACTGATG
CAATGCGTAATAATTAGATAGCTTGAAACTATTTACACAACGATGACTCCACATTGAGGA
CCCGAAAACAATGTGTGCTGTTCCACCAATTACAGGCCAACATTGCAAGAACCCCACGTG
CAAAACAAAAATAATAGGCTAAATCTTACAATGTTACAGGCCATCATTCCAATCTCTTAC
AGCATTAGTATAAATCACGAACTCGAGCTAGATGCTATCTCAGACCAGAGCACGCCAAGT
TACTATAACATCATGGATAAGTAGCACTGGGGAACTAAACAACTATCTAAACAAGATTAT
ACACACCAAAGCAATTGACATATTTGCACAAAGATAGCAAATCAACGTAAATGCATCTGT
TGAAGCGCAGATTGAATCTAGAAGCATAGAGGTTACGGAACGCAAGAACACGAGGAACGA
GTCCCCCAGATTGACGTGCAATCCAGAGGCGCACCCGCGACACGAGTATAACGGCAGAAT
CCAAGGCACGCAAGAACAATGAACAATGCAAGAACCATTAGGGGATGGCAATACGGCATT
CCCGGATCAGGGAATGGCGAGCTCGACGCGACCAAAACCGACGTCGCCGATGGCCAAATC
CGGAGCCGCGAGAATCAAGAACGCGTCGAATCGCCGCCGCAATGCTCGACGCCGCGGGAA
AAAATCTTCGTAAGGATTTATGCCTTCGATGCTATCGCCGGCGGCGTACTAGGTGCGGCG
GTGGAGCGGGGTACTCACATGTGTGGAGGCACTCGGAGATGGTGGTGGCCTCGCGGAGCA
GGCGGTGGCAGAGCTTGCACGTCATGCAGCGCGCGAGCTGCTCCCGCTTCACCATCACCA
CCCCGCTCCCATCCACGGCCACGGGCCGCCGCCGCGGTCGCCCCCGCCCCCTCTTCACTC
CCCTCTCCGGCTGCGGCTCCGCCACCTTCACAGCATCCTCCTTCGCCTGCTCCCCGTCAG
CCTCCTCCATCACCTCCACCTCGGCCACCGCCGCCGCCGCCGCCGCCGCCATCGGTGTGT
CCTCCGGCGGGGTCGGCGATGCGGGCCCGCTCTGCATGGCGTGGGGCCCCAGCGCAGCTA
GCGCCGCATGCTGCGGAGGCGCAAAAGCAGGGACTTTCTACCCGCCGCCACTCCCCTGAG
CGTTGAAATGGGAGGAGAGATCGAAGAAGAGGAGGAGGACGCCGACGAGGTGGAGAAGGG
AGTTGAATATGAGAGAGAGAAAAATAAGTATTTGCGTATTTATCGAGGGAAGGGAGAAGG
AGAAGAAACGGAGGACGGATGGAGAAGGCAGAGAGGTTATTGCGTTGGTTTTATTATAGT
ACTACTAGTAGTGTATAACAAATATTGAAATTGGTTTTCTATCCTTGCTTTTGTACTGTA
TATATTGTTTTCATTTGTTTTCCTTATCTTCTGTTGTATATAAAACACAAAAAATATGTA
TTTGCATTTTTACGGGGTGTATATACATATTTATGTCAAAATATGTATGGTGAGAAAAAT
GTGATGCGGTAAAGTTACCGAAAGCTTTATTTGGCATATATGTATATATGGCTGGATCCA
GCACAGTGTTGACAAAAGCAAATATTTTGTATTTTTTGTAGCACGAAGCTTCTGGAGATG
TAACGGGCAATAAAAGGCGTCCTACCGTTTCCACTGTTTTTACGGAAAATAAATGGTAGA
TAGTCGATGTTTGTTGTCACCCATAATGGCTTTTGCATGAATGCGATTAAATGGGCATAT
CATGATGATCCTTGGTGGTTACGCATAAAGATTATAATAAGTATATATTATTAATATCCG
AATATATGTGCATTAAAATCGTATCTTAGAGTCGGGTAGCATTGTGATGACTAATGGGTT
TCTTTTCTATGGATACTTGATGGGAAAATAATTTCCTAGCTTGTATATGTTCCTTGAGTA
TGCAAAGCATAGTAAAAATAGGTACATTGTTGTAGCAAAAAACATTGATACTTGGCAGCC
AACTATCATTTTGTCTCATTGGTAGTTGTATATCTTTGTTCGGTTTAAAATTAGTTCATT
GTCATGGTGATCAACTCGGTTCTATATGCGTGTAAAAATAAACTAATGGATTCTGTTCTA
TTATAGGTAACTAGCTTATCATATAATAATGGAAATCGAATTCCGTTGCATAACAAATAG
GCGTGAAAAAATGGCAGTTGTATAGATGTTGATATTTTGATTTTATGATTTTAGTGTGTT
CATTATTGTCCTCATTCTTTCTAGTGGTAATGATGTTGTAAATACATGTTAATGGTGAGA
AAATTGTGCCATGGTAAAGTTCCCGAACTAAGCTTCTTATACAGGCTGGATCCAACACAT
ACCGTATCGATAAACACAAATAATTTATATCTTTTGTACCAAAGTTTTTAGAAACGTAAC
GGGCAATAAAAGACGTCCTACCGTTTTCATTGTTTCCACAGAAAATAGATGGTAGATAGT
TATTACTCTCTCCGTTCGTAAATATTTGTCTTTTAAAAGATTCAACTACGAACTACATAC
AGAACAAAATGAGTGAACTTACACTCTAAATTATGTCTATATACGTCCATATGTAATCCG
TAGTGAAATCTTTAAAAAAACAAATATTTAGGAGCGGAGGGAGTACTTTTTATCATTTAT
AAACGCTTTGCATGGATATGATTAAATGGGCATCTCATGGAGATCCTTCCCCATGACACG
TAAAAAATAAGCATATAATATTAATATCGCGATATATGCTCATTAAAATCGTATCATATG
CAAAAAGTAGCGTTGTGCTAACTATTTTATGTATTCCTTCTGTTATCTTTCTGGGTATAT
CTTGGAAAAGTAAAAAAAAAGTAGCTAGAACATGATAAAAAGAGACATCATTGTTCTTCA
ATTGATAGTTACTGCTTGGGTCAAAACTAGTTCACCATGTCATGGTGATCATTTGAGGTT
CTATGTGCATGCCATTTGCATTCAAGACAAAATTGCTATTTAAACCGTCCATGGTTATTG
ATGTCATGAACATTATGAAACCTAAAAGGGTATAAACAATACATCTTGCATGAATAAATA
TGGCATGCACATATAGGTGATGTTTCCTGGACATACTAATATCTTATATGCATTTTTCTG
AGTTCATATGAATTCTTTATGAATTTTAAACGACTTTAATCATTATTTTAGAAATTCTCA
TACGAATTCATATGAACTCAGAAAAATGCAAATAATATCAGAATGTTTAGAAAACATCAC
ATATATGTACATATCATTTTATTCATGAAGAAAGTATTATTTATACCCTTTTATATTTGA
TAATGTTAATAACACCAATAACCTAAGGGAGTTCAAACGGTACTTTTGTCTTGAATGCAA
ATGAAATCCACTAAAGTTTTTTTTGAACATTTTGATATCTTATTTGTATTTTTTACGACT
TCATACAATCTTTTTGTGAATTTCTAAAGTATTGGTCAAGCAACAAAGGGCATTCGGGTG
ACCTAGAAGGAAAACCTAAGGGCAAAACGGAGCATAGTCGGAAAGTAAAGGCAAACCCCA
TGGGTAAGTTCCAACTAGGGGAAAAAAAATAATTGTCCTTGTTTATTGTATTGTTTTGTC
GTATCGTCGTCATTCTTGTCTAGAGGTGACAACATGTTTGTTATGCTGGTTTCCTTCGGT
TTTTCATTCTTCCGTTTGTACTAGATAATTTTGTTTTGATTTTCCTTTGGTGTACAAAAA
TAAAAGAACACACACACACACACACACATATATATATACATACATTTCTTCGGGGGTTTG
TGTACATATTTTCGTTCGGTATATATGGTAAATACCTTGGATGATGAGGAAATTGTGACA
TGGTAATTTTACTTCACATTTCTGTCACACCTTGCATTTTGCCTCTTCTGACTAAGTCAA
CATAGCTAAAAAGTTAGGACCAATTAAAAAAATTATGTGCTTATGATGCTTGACTTGATT
GCTCTTGCTTGTGTGCATGTTTATGATTTCAAATTCACAAAACCCTCCTACTCTCTAGAC
TCATCTTCTTGCTCCAAATCCTTCCCCAGTGACCATACCATGTGTATAGGACTTAATTTG
CAAAATATTATTTCGACCAAAAAGCACGTCTCCTGATAACATAAAAAATCCTTTGCTGGT
GTGGTAAGAAAGTCTCCTCAGGTGATGGAGGTGGATGTGACCTGTGAGGCTGATGCAAAC
GTTTCCAATGATTATGGAGTTGAGTCACGTGACTCCTCGATGGATCTTGAGGTGATCCCT
ACTCCCCCTTGGTTACCTAAGAGAACTTGCACTTTAGCCTTCGAAATGTGCTCAACAAGA
CGGAGAAGATTGAAGACAATGCCATAGCTGCTGCAAACAAGAGGGACATCGAAGGTACTT
CTCGACGCACCAATTCCTTTGACACTTTATCTAATCCTGAGTTGATTATGACTGCTGTTA
AAGTGGAGATTCATATACCGGATGCTGATTTTGCTAATACTGATATCCTTAGAGAACTTG
AGAAATTTAGAAATGTAGAATCTAATGGTGGAATAGATGAACACTTTGAAAATAATATGG
TTCTTACCAATGCCAAAGGGGGTAAAACTCCTTTTAATCTGAATTGGGGGGAGGAAGACA
ATGTAGACTATGGTGAATTCATGGTTGTGAAGTATAGAAAGGAAAAAGACAGTAAGCATA
ATCCTATGGTGATTAGGCCTATCACTCAAATTCAAAAATACTGCGACTCCGTGAAAAAAG
ATGAGGGTAACCCTACTCTGCCTCCTAGTAGGGTAACCAAAAAAGGGGAAAACTCATGTG
TTAAATGAATGGTATATTGTGGAATTGCAGAGGAGCAGGTAAGAGAGGGATGGCTACATG
TTTCTCTGATATTATCAAAGACCATTCCCTTGACTTCGTGGGCATTCAAGAAAACAAGAA
AAAAGAGTTTCCTCCTAAATTCTTGGAAAGGTGGATCCCTTGGACGGGTTATCATGGAAT
CATGTTCCCTCTGTGGGTAGATATGGTGGCTTCTCTGTGGGGTTAGAAAAGAGACTCTTG
AAATGGTTTCTTGGTCGATAGGAAGAACTCTTATCCATGTTACTATTTTTTATGTTAGTA
GGAAGTGTATTTGGGCACTTGTGGTGGTGTATGGGGCGGCCCATGATGATTGTAAAGATG
AATTCCTGAATGAGATGATGCATACTTGTTCCAACCTTAGGATCCCCAATATTATAGGTG
GTGATTTTAACATAATCCGAGGAATTGAGGAGTGATGACCCACAAGTATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAGGAGCAGAAGGACCTGACAAG
TAGTTTTCACCAAGGTAAAATCTGCA