morexGenes - Barley RNA-seq Database

Contig contig_53803
Source Contig contig_53803
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53803 (7847 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_53803

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67871	1	942 bp	MLOC_67871.1	Available	Available	None
MLOC_67870	2	1605 bp	None	Available	Available	None
CDS Structure of MLOC_67871

CDS Structure of MLOC_67870

Contig Sequence (7847 bp)

>contig_53803 7847 assembly3_WGSMorex_rbca.fasta
CATCGGTCTACACCATCTGTTCCCTTGCGGTCGGCGGCGACACCACGATTTTTTATGTGG
CGTTTGGTCGCCTCCTGTTTCATGTTGTGGGGTTGAACCAAGATGTTTGTGAGGGCAAGG
GGATCGCCTACTTCGTGAAGATCTACCCTGAGTGAGGCAAGTCCTTCGTGGACGTAAGCC
ATGGTGAAATATACAAGGTTGCTTCTCCGTGGACCCTTCGTGGGTTGAGCTCTCTGTGGA
CTAGCGCGGCTGTTATCCTCCGTGGATTGAAGTCTCCATCAAAGTGGATGTATGATAGCA
CCACCTATCAGAANNNNNCCAAAAATCTTCGTGTCAATCTTTGCGTTTGATCTTCGTGTC
CCTACACTCTATTTACATGTGCATGTCTTTACTTTACGCTACTATACTCTTAGACTTGCA
CGTATATGATTTGATTGACTTGCTATAATTGCCAAAACATGCCCACAACTAAAATTGGAA
AAAGGCTAAGTTTTTTATTTGGTCAAGTAGTCTAATCACACCCTCTAGACATACTTTGGA
CCCTACAGCCTCTTGTGGTCGCTGGTTTAAGAATGAGTCGTTGTAGGTGTCGCCCACTCT
CGCCGAGTGATGCGGTTGTTGGGCTTGCGTGCGAAGTTGGCTCGTGCATGGTCTTGTGGT
GTTGTCCTCCTATTGCGTGCCTTCAACAAAAAAGTAGTCCAAGACTCCAGAGTGCAAAAA
TACACAACAAAAAATAAACCTCCATCGGGACTCAATCTCGCGACTCCGCGCTTCCGCACA
TCGAGTCTAATCACTAAGCCAACTAACTACTAATGACTATTTACAACATGAACCTCTTAA
GAACAAAAACATAGAAGCAATATTTATTACACATTGCATTGTAAAGTTTGAAATTTTCAA
TTATTTGAAAACACGTTCACATATTTCAAATGAAGTTCACGAGCATATAAAAAAGTTCGC
GTATCCAAAAAAAATCACCAAATCGAAAAGGTTCATGTATTCAAAAAAAACCTCACAAAT
TCATCGATTTAAAAAAAATCATCAAACATTAAAAGAAGTTCGTTGGTTTAAGGAAAAAAG
TTCATGCAAAATTGAAAAAAATTATCGAATTCTCGAAAAGTTCATCGAAAAATGAAAATA
GGTCATCGATTCGAAGAAAAAAGTTCATCAAATTTAAAAAAGTTCATCGATTTAAAAAAG
TTCATCAAATTTTAAAAAAAAATCATCAATTTTCGAAAAAAATCCTCAAAATGGAAAAGG
TTCATCATTTTAAAAGAGTCCAAAAAATTGAAAAACATTCAGCATATAAGGAAGAAAAAA
ACAAAAAGGGAAAAAGGGAAGAAAGACAGAAAAAAAGAAAAGAATAAACAATAAACAAGG
GAAAAGATGTAATCTATCACTTCCGCCGAAGTGGACGAGTGGTTAGCGCATTTTACAAAT
TACAGCTAAACAGGAGGTCGGTGGTTCAATAATCTCCACGGGCGCTATTTTGTGCGGCTT
AGAAAGCCGAATGACAAAAGGGTAATTGGACCGGCCCAGCAGGAACTGCAGGCATCCGTT
TGCAAACGGACGCTTAAGCGCCCAATAGGATTTGCCTTGTGCTGAACCTTTTGTAGGTAG
GTCCCATGTTGTTGCATTTCAAGTATCAAAAATACATATGACAAAAATACTTCCTCCGTT
TCTAAATATATGATGTACTGTATTATTTATCTAAAAAGTGAAACTTATCTAACTTTGACC
AATTTTATATACAAAAATACCAATATCTAGAATACCAAATCAATATTATTGAACTCACCA
TGAAGTATATTTTAATATTTTATATATTTAGTATTGTAAATATTATATTTTGATGTAAAG
TTGAACATAGATAACGTTTGATTTTCTAAAAAGCTAACACACCTTATATTTACGTGCATT
TAGGAACGAAGGGAGTATTGAGGCAACTATCCTACTGCAGGCAATCATAAGTGATGGTTG
CGTCTACCGAGCCTAATGCAGGCAATCTAAATACGAGCTGTCCTTCCTACTCACACACTG
CAACACAGACAACAAACTCCAGGTTCAATCTTTTGTTTCTTCGTCCTGCAGCGCAGATGA
TCACACGGCCAGGGCCAGTATCGAACGTACACAAGGCCACACATACGTACGTGCGGCCGA
ATACATAGACATAGGCATAGGTAGAACAAGGAGACGACGGGTCGTGGCACCGGATGTCAC
AAGCGACAGAGGTAACGTCTCATCGAACTGGACCAAGGACCTGTAGGCGGCATTGGGCTG
CCAGTATGCCGGGATGACCTGATTGGCGACGACCGACCTGCCGGACTCGTCGGTGACGCG
CAGCGAGAATGGCCCCTGCAGCGGGCGGAGCCTGTCCAGGCGCCAGATGGATCCCCACGA
CTCCCTCATCGGCGTCCAGTACCCCGTCGGCGCCCTGTCCGGCAGCCGTGACTCCATTAT
GTCCACCTGCGCCACGTCGCCGTCGCCGTCCTCGTACTCCACCAGGATCGCCAGGTAGTT
GGGGTTGGACCCGTGCTGCACGCGGAACGTCACCGTGAGCCCCGGGTACTGGCACGGCAC
CCTGCAATGTACGCCATTCCCACTGGTATCAGTGTCTGTCACCACACGAACAACCAAGAA
AAGCAAACAAAAGCAGCATGCCTGCCACTAGATTATGGATCTCTAATCCCGTAAAGTTAG
GATGTGCAAAATGGTTCCTTCTGTTGACAACTAGTGAGACGAAAGTGCAGGCAAAGCACA
GAGTTGATATTACTATATTTGCTCTTGTAGCAAGGAAAGTAGCCAACGGTGGACAAGGAA
AGACGGATGCCATGTACTATGTCCTTGTCGGTTAAAGTTAATCATGTTGAGATTAATAAG
TAAGATAAGATGGTGGACCTACGTACCTCTTGAACTGCATGTCGATGATGCCAGCGTGGC
GGAGCTCGTCGTTGCGGCCGTACTTGGCCATGGCGCCGAAGGCGGTGCCGCTGAGGTCAA
AATGATAGCGGGAGACCGGGTAGTAGTTCATGTCCGTGATGATCACCGTTTCCGGGACGC
CGGAGCAGGCACGATGGGCCACGCACCTGATCTGCATTCCACGCAACCATTTAAGATCCA
TGGAATCAATCAAATTACTACTCATTCTACAAGGAAATATAAGACTGTTTGGATCACTAA
TCACAGGCTGACTCTATCACTTTGAAGTACTAGTATCAATAAAAAAAAATCATTAATACG
CAAAGATTGTGTATCTATTCATTGATAAAATGATAGAACGAGTACATAGAAAGGTACAAC
ACACACATGACACGAACGCAAGATGGTGTGAATATGGTGCCCAAAACAGAAAGACATGAG
ATGCTGGCCCAAACGAGCAAACAACGCAGCTAAACTTCCCTAACTTGAGGGGTAGTCCAA
ACCAACAAACCATCCTACATCCACAAATCCATCATCGGGTAAGCCACGTGCACACAAGAC
GATGCCTTCAAGAAGGATATTGACGTTGTGGCTCCATCACCGTCCCATTCGAAGAATTGA
ACATAGGGTTTCTCCTGATACTCAAAGAGGGGCATAGAGAGGGGCCATGGTAACGCCTCC
AAGGAGGGGACGACACCCATCGGTGTCACACTGCCAACACCGGCAAGCCGAGCAGGGATT
TCTCCATGGCCTGGGTCTAAGCAATCACATTGCCCCGAAACAGGTGGCCCGTGTTGCGGA
GGTGGCGGGCGGAAAGGGCCGACGCAGGGGACACGACGATGACAGCTGACACCGGCAAGC
CAGAACTGGAGAGAATGCATATCCAGGCCGCCGGGACCAAGGCCGTCAGGACACAGGAAA
TCCGAAGAAGCTGGAGGACCGTAGCCTACGGAGCGCCATCCCGACGCTGCATCAGCAGGG
ACACCGGACGAACGCAGGTCCAGGGCTGCAAGGACCGGAGCTGCACCAGGAAGACGCCCA
CCGCGAGGAAAAAATCGCCTGCCGAATGCCAGGACGGCGCGCCGCTGGGGGCACCACGGA
GAACACACCAAAAGAAACACAGCCCCGGAGCCATGGCCGCAGACCGCAGAAGGAAGGACG
ACACCCGGCGCCACACCAAAGGCAGCCTGAGCCAGCCGAGGAGCCATGCCAACACCATCC
CAGGATCAGGCACAGGAGCGTCAGATCTGATGCAGGAGCATGGTGAGGCAGAGGACCTCG
CTGACGCCAAGCGCTGGAAGCAGCCGGTGGCAAGGGGGTGAGCTGGGACGGGGCAGCAGC
GGGCCGGCGGAGTCGCGCCCGCGCCGGGCGCAGCGAACGGCCGGAGCCGACGGGCGGGCG
AGGAGAAGGGGGACTGAAGGCAGGAGTCAGCCCCGCCGCCACCTTCGTGGGAGGCGGCGA
GGTGGAGGGCGGGGCTGCGGGCTAGGGTTCCCCCGCCGCCGCCAGGGAGGGCGACGCGGG
GGTCGCGCTAGCTAGTCCGGTTTCACTTGTTGCTCACCCTCACCTAGTACTCCTATCAAG
CAACTGCAACGCCGGCGAGAGACACTAGCTAAGCTAACCTGGTAGCATGAGCCGCACCCC
TTGCCGTCCTTGAAGAGCGGCTGGTTGCCGCACGACGTCATTGACGAGAAAGGCGGCCAG
TTGACGTTCTTGAACCCGCAAGCGCCACCTGCATCCGTGCCAGTGATTTCATTGCTACGT
ATTTATTGAAAAAACAAGAACCGCAGTCAGCAGCATTCTTTGTCGTACCGTTGTCGTACG
GGCCGGCGCCATTGGGAGCGCCGTACCAGGTGGCCCGGGCATCGAGCCAGCCCCCACCGT
CGCCGTTGGTGCCGCCGCCGCCGCCGGAGCTGGAGTTGGAGGTGGGGATATTGGATGCAG
GGACGTTGGTGGCGGGGACATTGGTGGTGGGGGCAGGCGGAGGTGGGTAACAGAACAGAT
CGGGCAGAAAACCGCAGCCGCAGCATCCATGGGGATGGGCAGCGACCAGGAAGAAGAGAG
CAGCCACACGGGCAAAGGAGAAGGCTGCTGCCATTGCTCGGCCGCTGGTCTGCTGTGGCG
AATGCCGTACTCCAGTACAAGGAAGGGATCCAACTGAAGCGCCGTCTTGTGCTTGCGGAA
GGAAGGAATGGAGAAGTGGACTAATATAATAGCCGTGATTCTTCCCCTCCCGTTCAGACG
GCGGGCGACGCCGCAGACGAGGACGAGCGGAAGATGTGACAGGGGCGCCGTCCGTCGTAC
GAGCTAGCTATGCCACTCCCAGCCCAGGTCCCTAACACCGGCCCGGCCGCGTCGCCGGCG
CATCAGATCCGTCCACAACCTTCGCATACGCGGTCGCGAGGACAGAGAGCACGAGCTTCT
GAAGCCACACGGCCGTGTAGGAGGATGCCGCGGATGGCCTCACCCATCTCCACCCCAGCC
ACCTCACTGCAGAAGAGCAAGAAAGATCGAGGAGGAGGATTCCGGGGTAAGATTAGAACA
CAGTCTATCCAACCATATCCTTGCGTGGACGGAAAAAAAAGTAACTCTGCAAAAACGGGG
GTAATAAATACTGACCTTTTTCACCCATACGAGCAGTGCAGCTTAGAGCAAATTTCATCA
CTTTCGTTTTTAGCTCATATTTGACGTGCTTCAACATAAAAAAATAAAAAAATATCACAT
AGTTTATCACAGAAATCAATACAAATCAAATATAGTTCATCAAATCAATACAAATCAAAA
TAGTTCAACAAATAAAAACTNATAATTCATCACACATCGAGCTAGGCGTTGCCCTCGAGC
CTTCATAGATGCTCCACCAAATCATCGTGCAGTTGTTGATGCATCTGTGGGTATCGGATC
TCCTGATGCATGTTGAGGAAGGCAGTTCACGTTGTCGATAGCTCGTGATCAACTTGAACA
AGAGGACCCTGCGTGTAATATGGTTCAGTGTCAAACATTGGCTCTTCCTGTTCGCTCTCA
ATGATCATGTTGTGCAAGATGACACAGCAAGTCATGACTTTCCACAGTTGATCTTTCGAC
CAGGTCTGAACGGGGTACCGGACAACAGCAAAACGAGATTGAAGCACACCAAATGCCCAC
TCGACATTCTTCTTGCAAGCTTCTTGACACTTGGAGAAAAAAAGAGATAACATTGCAAAA
GAGGCGGTAATAAATACTGGCCTTTTTCACCGGTCTGAGCAGTGCAGCTTAACACATTCT
AAAACAAGATTCAAATGCCACTCCACGCTTTCACAAGCCTCCCAGCAAGTATCAATGCCA
TGAAATGAAGGCCGGGTATTCACTCAACTTTTTTTTGCTTTAAATGTAGTATATGAACCA
AACAACACACAACTAGCAATATATGAACAAAACATCACTAACATAACGATAATAGTAATA
TTTTAATGCATCAAACCATAAGGGCATGAATGCGTAAGTACCTTTTGATTGATAAAGTGA
TGATGTCTTTCTTACAATATAACTCCACGGTCGCCTTTTTGGAAGAGATTGATGACAACT
TCATCCTTCACTTGATTAAAAAATTCTCTCTCACTAAATGTAACCAAACAATTGTTCAAA
TATTCATCATCCATTTTGCTCCTTAGCTTATTCTTCACATAGCTCACTGGAGAGAATACC
CTTTCAACACTAGCAGTAGCTACTCGCATAATCAATACCAACTTAAGAAGCTTGTAAACA
ATATGATATTGTTCGTGCTTGTTTGTCTCAACAAGCACAACTGAAAGTTGACACAAATTT
TTTAGGTTTTGAAACCTTTCATCTCTACGCACATTAGTAACATACATGTTTGGTTGCCAT
GGAAGTCTTGCGAGTTCATCACTTGTTAAATCAGAAGCATAAAACTTTGTAGCAAGCCTA
AACAACCTATCTTGATCATAAGCAACAAATAGATGAAGTGGACAGAATGCTGCCATGCAA
GAAAGTAGCTCCATGTTTACCTCATCAAATCTGCCATTCAGCTCACTAATTTGCCTATCA
ATGACACCAACGAACATATCAACCTTGGAGCGTTGGTAATTGATTGCATCATTACATAAA
CCCCTTCTAGGCCGGCCAACGGGTAAGTAAGGACCCTCCATATCAACAACTTCGACCTTA
TGCTTCGGTATGAGCACTACAAACCTCACCTTCATGTTTCTTCAATCTCAGCTTCATGTT
CCAGTTATTAAATCCCTTCTTCCCAAAAGCATCTCCATCGGGACATCTTGTTTTATCCTT
GAACAAATAGCAAATGAAGCAGAAAGCTTTATCTTTTTCCACACTATACTCAATCCGTGG
AAATTCTTTAAACCAAACACGACAAAAACGATGCTCTTTTCCACTTTTATTTGTAAACTT
GAACTTGTGATTTTTTGGTTGACATGACCCCATCTCAATATATCTCCTTACTCTATCTTG
GTCATTGACATCATACACTTAGAAGGGAATCCGCTTTCCACGATCATCCTCGAGTGCCTC
CAAATATGCTTGCATAGGTTCATCATCTTCATTAATAGAATCATCATCTTCTACATGAGG
TGTTGAGGTTTCTCCTCTACTCTTCGGTTCTTGCCATAACACCAATCACAAATTGCTCTC
AAAATGAACAGGAGAAGTACAAGTACTAGATGCAGCTAGTGTTTGATTCGGTGTGGATAC
TTCATCTGTTTTCCTTGCCTTCGAAGCCTTTTCCCACATTGCAAATATGCTACTGTTCTT
TAGTCTCTTCTTCATCTACGTTAGGAAAACAAGGCTGCATATGTTAAATAGATAGACTAC
TTGCATCTAGTAAATTAGACTTAAGCAAGCAACATCAATTGCTACTAATTTGCACCTTGT
GCTTGTGTGTCGCGGCATTGGGGGCGAAGAGGAGGGGTAGACGGGGG