Map Locations of contig_53788 (9375 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_53788

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67858 3 5289 bp AK356898 Available Available None
MLOC_67856 2 1706 bp MLOC_67856.1 Available Available LOC_Os01g65660.1, FRAME:+3, EVALUE:0.0, 13101.m07097 protein amino acid transporter, putative, expressed
MLOC_67857 1 127 bp MLOC_67857.1 Available Available None





CDS Structure of MLOC_67858






CDS Structure of MLOC_67856






CDS Structure of MLOC_67857






Contig Sequence (9375 bp)

>contig_53788 9375 assembly3_WGSMorex_rbca.fasta
GCCGTCGCCGCCGCCGCCGCCGCCACAGCATCAGGGGAAGACGTCGAGACGGGCGAACAC
GAGCGCAAAGGTGCGCCGCCCCTCCCTCCCTGTGCTCCCTCGTCTCGATTTTCCTGCCTG
GTTTATAGGGGTGTTCGTTTAGCGTGCACGATTCCTCCTGGGGGTCGGATTGATCGGCCC
CGCCGGCTTTTGTTTGTCCGTTGCAGGGACGGTATGGACGGCGACGGCGCACATTGTGAC
GGCGGTGATCGGCTCCGGCGTGCTGGCGCTGGCGTGGAGCGTGGCGCAGCTGGGATGGGT
GGCAGGGCCGCTCGCGCTGGTGGGCTTCGCGTGCGTCACCTACTACACCTCCACGCTGCT
CGCCAACGCCTACCGCGCGCCCGACCCCGTCACCGGCGCCAGGAACCACACCTACACGGA
CGCCGTCCGATCATACCTCAGTACGCGACCCAACCCCCTCCCCCGCTGTTCCTCCACGAG
CACACCAAAAAATTCTCACCCCAATCAATGCCTGAAACTCAAACTTTTTTCCCCAGGCCC
CAGAGAGGTGTTCATGTGCGGGATCGCCCAGTACGGGAACCTGTGGGGCACCATGGTCGG
CTACACCATCACCGCGACCATCAGCATGGTGTGAGTATCGTCAAACCAACAACCAAAAAT
TCAGTCCACCTCCTCCTCACCACGAATCAAACTATGACAAAATTATCATTCAGGGGCATG
CTGAATCCTGTTCTTTTTCTCTTTGTGCGCTCTGTTTGCGAAGTGCGATCAGGAGGTCGG
ACTGCGTCCACGAGAACGGCCAGGGCGCGCGCTGCGACGCGCCGGGGACCGTGCTCATGC
TGGCCTTCACCGTGGTCCAGGTGGTGCTGTCCCAGTTCCCCGGCCTGGAGCACATCACGT
GGCTGTCGATCGTGGCGGCGGTCATGTCGTTCGCCTACTCCTTCATCGGGCTGGCGCTCT
CGGTGACGGAGTGGGCGTCGCACGGCCTCCGACCCGACGGGAGGATAGCAGGCGCTACCG
CGGCGTCGTCCAGCAAGAAGACTTGGGACGTGCTCCTTGCCCTTGGGAACATTGCCTTTG
CTTACACTTTCGCAGAAGTGCTAATTGAGATCCAGGTAGGCATGGATGATGATGGATTCA
GATACTCAAACTTCTAGAAATGATATGTTTGCTCAGACTTCAGAACTCTGAACTGATTGA
CACATCAATACAGGAAGGTTTTTTGTTTCAGAACATTACTCAAGTGGGAATGCTTTTGTC
ACTAACTTCTGACTTGTTTTGTTTGCAGGATACACTGAAGTCCCCACCATCTGAGCACAA
GACCATGAAGAAGGCAGCAATGTATGGAATCGGAGCCACCACCATATTCTACATCTCTGT
TGGCTGCGCCGGATACGCGGCATTTGGTTCAGATGCTCCCGGCAACATACTGACGGCCCC
CGGGTTAGGGCCATTCTGGCTCGTCGACATCGCCAACATGTGCCTCATCCTCCATCTCAT
TGGGGCATATCAGGTCAGTACATCTCAAATCAGAAATTCAGGATTGCATTTGCCATAAAT
TTGTCAAGCTCAAGTGCTTGGAATGAGCCTTGCAGCCCAACTGTTCAACAGCTTGAACTA
AATGTTTTCCTCAACACAGGTCTATGCACAGCCCATATTCGCTACAGCAGAGAGGTGGAT
TGTCTCCAGGTGGCCAGACACAAAGTTCATCAGCAGTGCATACACGGTCAGCATCCCGCT
CATGCAACGAGGCTCGGTGACCGTCGCGCCTTACAAGCTCGTCCTACGGACCGTCATAGT
TATCGCAACAACTGTGGTGGCAATGATGATACCCTTCTTCAACGCGGTGCTAGGGCTCCT
CGGCGCCTTCAGCTTCTGGCCGCTAACCGTGTACTTCCCCATAAGCATGCACATTGCCCA
GGGGAAGATCACCAAGGGGCTCAAGTGGTATCTTCTGCAAGGTTTGAGCATGGTCTGCCT
GATGATCTCAGTGGCAGTGGGAATAGGCTCTGTGACCGACATCGTCGATAGCCTGAAGAT
CTCCACCCCTTTCAAAACTGTCAGCTAGAGGATGTACAAGACTTGTAGAATAGCAGTTGA
ATCTGTAGGCTGAATCTCTGTACCGTATCATTTTTCTCTGATGTCCACGTATCGGGATGT
GATATCCGATCAGTTCCGCAAAGATTTGGAGCTAACAGCTTGTCTGGATCGGTTGTAATG
ACCCATTGGCCTGTTTCTACTACCTCTCTAAATAAACTTGCAAGAATGACTAACATGTAA
AATAGGAAGTGCTGTGTTAAAGGACATGCTCCTCTCTGATAAAATCGGGCCCATTCGATC
CAAGTAGTCGAAATTAGACTACGCTGCTATGTTTCATCATTATCTAACAGTGCAGTACAA
TAAGTCATCATCTAACATTTTTACAGAAACTGCAAGCTATATGACTGAATTTATACAGAA
ACTGCTGCAGATACATGGCCTATGAGGCTACCAGATGCTACTACATCTCCAGGTTATTAT
TAACAGCCTTCTAGTTACTTGCTTCCAGCTCACTAGTAATACATTCTATGGTCCTAATCG
GCTACTTCAGAGTGTTGTTGCTATTCTGAGTGTAAAGGTCCTCATCCTGTTGATAGTGGC
ATCTTACAAAGAAAGGTAACCTGCTTTTACTTATTATTCTTGTTCTTTGCCCTCCGAATA
CGGAAGTAGAATCAGTGTCCATAAGCATTTTCACAACTTCTCTCGTCGTCAGTCGCTCAG
AAGGGGCTCGAATAATTCAAATAATGGCAGTGCTAAAGACCTTTATTACATCTTCTGATG
CATAGTTGCCAAATTTTGATCAAGAACCTCTGCGGTATTTTTGGTCAGAAGAATGGGATC
AAACCCAGGACACAGTTTCCAGTTCACCTTCAAACTGGTAGTCTGTCCGGCTACGTCCAC
TAAGAAACTCCGACGGCACACCACTAGAGCTCACGTCACTCTCTTCGTCCGCCTTGAGAG
AATATGGAAGCTCTGCAGTTCAGATATAAGCTGACGTAAGACTTAAAATCTTCAGACTGC
TATCTTAAGGTAGTATAATATGCATCTAAACAAGAATAAGCAATACATCACATGTTAAAT
TTACTACTAATTATACCTGGATAGATCTGCATTAATGACTGATACCAAAAATCTGTAAGA
ATATTAAGAAGAAACCACAAGACAAACTGCATCTATTAACATATACTGATATCAAGTTAC
AGATGCTACAGCAATTATACTGATTTAACTGTCAAACTAAATAGTTTGTGCTTCATTTCA
TTAGACGGCGTTATTTGCCAGGACAGGACAAGACGAATACTGAAGTAGTTGAGTTTGAGT
AGCACTGGAAAATTATTTTCTACAGTCCTCACACAGAAGACTAAACGTTAAACCATTACA
GCATTATAACTACAAAAAGAGATGTAAAGATAACTCAATGTAAGTGGCAAGATGTCTCAA
CTTACAGCGAGCTATTTAGCCATGGGTACCGGCAAAGCAGCTGATGTATTGACCCCTCGC
GCATGGAAGGACTCGGCAATCCACTTTGAGTCACTGTCATCACCACTCTCGGTGTCTTGC
TTTCTGTTGATATCCTCAAGCCTGTCATTTTCATATCTCAGACATGCCAATCCAGATAGG
AGAACAACCAAAGAGATCACCATGATCAGCACAGCAAAAAGCCGCCTCCGTGAGAAGCTA
CGATGGTTGTCAATCCATTGGCAAGAGCGTAAACTGGTGGCAGATTGCCTCCACCTTTCT
GGAGTGTCAGGGACACAAAGGTCAGAGTTTTCAGAGAATGCATCATCTTCGGCAATCATC
AGGAGCTGTGGGGGGATTGGTCCAGACAAATTGTTGTGAGAGAAATCAACATAGCTTAGC
CTCAGTGACTGCAATGCATCAGGGATCTCACCAGAGAACATGTTATAAGATAGATTGAGT
GAATTCAGCATCAAAAGGGAGCCAACTGTGTCAGGAATTTGGCCAGACATAGAATTCTCT
GCAAGATTAAGGTCAACCAGGCTGTTGCACAAACCAATTTCTGGTGGTATTGACCCTTCC
AGTGCATTCTGTTCCAAATGCAGGTATGATAATTGCTTCAGGTTACCTATCTGTGCAGGG
ATTTGGCCAGAGAATCTGTTGTTGGAAGCAACCAGCTTCTGCAGCTGAGAGAGATTTCCC
AGCTCCACTGGAAGTTCACTAGAGAAGTTGTTGTTCTGAAGAAGCAGCTGGGTTAGGGTG
GCTGAAATGCTTATATCAGAAGATATTCCTCCAGTAAATCCATTGTTAGCAACATCAATG
ATTACAGCATTAGGCAATCCCCACATGCCATGAGGAATGCTCCCACTGAACTGATTTTGA
CTCACTCTAAACCTCTCTAGTGTCTTGCAAGAAGAGTAAGAGGTGGGGAATTCACCTGAG
AAGTTGTTGCTCAAAGCCAGTAAAAACTGCAGTTTGTTGCTTTGACACAGGAACTTCGGA
AATTCACCGGTAAAATAATTCTCTGATATGTCAATTGCATTGAGTGGTGAGAACCGGCCA
AGGTTGGCAGGGAACTTTCCTGAGAACTGGTTTTCATAAGTTGAAAATGACTCAAGAAAC
TCCCAGTCCCCCAGTCCAGCAGGAAGCTCACCATAGAAGTTGTTCCTGTATATGTGGAAG
ACCTTAAGCTTCTTCAGGCTAGCAATTTCCTTGGGCAGTACACCAGTGAGTTGATTCTGA
GACACATCAAATTCAGACAACAATGTCAGGTGTGCAAGCTCAGGAGGAATTTCACCAGTC
AGGTTGTTTTGGTAGAGCTCAATCTTCCACAGGTTGCGCAAGTTGGATATCGCCTTCGGG
AACACACCGGTCATCTGATTGCGTGAGAAGTCCAGAGTCCCAAGTGATTCCAAGTGAAAT
ACTGAAGCTGGTATCTCTCCTCTAAGGTTGCATTGCCCCAAGAATAGCCATGTCAGGTTC
TTCAGGAGTCCAATGCTTTCAGGAACACCAGCTTCATCGAAACTGTTCTCTCCTAGGCCT
AATTCAGTTAGGCCTGATAACATGCCGATCCACACAGGAAATGCACCAGAAAAACTATTT
GTTGATAAGTCAAGAACTTGTAGCTTGAGCAATGATGAAAGATCATGCAATTGGCCTGTC
AAGCTGTTCATTGACAAATTAAGAACTTGCAAATTTGTGCAGTTAGTCAGTGCAGCAGGG
ATAATGCCTGAGATGGAATTTGCACTGAGGTCCAATGTACGCAACTGGTGGAGAAGAGAA
AATGATGGTGATATTGTGCCTGACAGCGAGGCATTTGAAAGTGATACTCCTGTGACCTCA
CCAGAAATTTTATTGCACGTTACACCGTGAAATTGGCACGGCGAGTGAGATTCATCCCAG
TTGCTCAGGTAATTCTGTGGATCTTCCACACAACTTTTGATGTCAAGGAGTGCATCTCTT
TCCAGACGTAAGGATGTGGATATTCCAACATTGGCAAGTAGGAGAATGCACCAGAAATAT
ATCTGAAGAGGTGAGGTTGGCATCCTGTGTACCTGAAAATAAGGGACCCTAAAAATTAGT
AATGGATCTGATGAAAATATAAATGCCTAGATATTTCCACAAAACTAGACACTCCTTAAA
TTCCAGAAACGAATAAAAGCAGTGTGCAGTTGGCTATCACCATAGTGATCTTTGAAAGAA
AAAAAAAATTAGGACGGTTCATGGAAATTGGAGCGTGAAAAGACTTCAAGACAAATCGTT
GTACTGAATAAACGTGGGGACCAAGCTACTAAAGGGATACAGTTCTTTTTAGCCTAGCAT
CCTACTAGCAAATATCAGTCATCTATTTTCTTGAGAAATATAAATGTACTCTCTGATATA
CCAAATTCTCTTCTAAGTCTCTAAGCACCACAGACTTATTCGGAAACCTATATGCAGATA
TTTTCACATTTACATTGGATATACGCACATCTTTTCTTCTCTTCTAAGTTTCTAAGCACC
GCAGACTTATTCGGAAACCTATATGCAGATATTTTCACATTTACATTGGATATACGCACA
TCTTTTCTTCTCTTCTAAGTTTCTAAGCACCGCAGACTTATTCGGGAACTTATATGCAGA
TATTTTCACATTTACATTGGACATACACACATCTTTTCTATCCTCTCGGATAACTAGAAC
CGGATCTTGGATGTGTTAAATGTACTCTCTGAATACCAAATTCTCTTCTAGTAAGTTTCT
AAGCACCGCAGACTTATTCAGAAACCTACATGCAGATATTTTAACATTTACATTGGATAT
ACCCAATCTTTTCCCAGCCTCTCGGTCTCGGATAACTAGCTAGAAGCGGATCTTGGATGT
GTTCATACTTCATGTCGACACTTGACTCATCCAGCAAGTGGTCGCACACAACGATTCCAA
ACCCGGAGCAGAACACGGGTCCTTATTACCGTTGTCTCTAGCACGTACGGCCATTTCTCT
TTGGTCAAAAAAGAAAGGAAAAAAAAACATATGGCCATTGCCTAGTATTTCGTCACGCGA
CGGCGAAATGTGAGTTCTGGTCAGTGCAGCAGCAGATCGTTGCCGGCCACACAGGATCGA
AGGGTGAGGGTGCGCGCTACTGGATGATGATCTGCAACTATATGGGCTCCCCTGAATTAT
GTTCCACGCCTTCTGCATGCACCATCTTGGCACTTTGCTGAACTATGCTTTGTCCAGTAC
TGATGAACACCAAAACATCGCTGTCAGAAACATGAACCATGCGTATGGAACGCTGATTCC
TCTCTCTCTCTCTCTCTCTCTCTCTCCAATGAACCTAACCACTAGCAGCAATATTGCTCC
GCTGTTCTCTTGATCAGAAAAGCTACCCATGCTGATTGCTTCCAGGCATGGATGGCCACT
AGTCTCTGATACTTCTCTCTGTTCATTATGTTTCCAAGAGCTGGGCGTTGGCTAGATCAT
TTTCTTTGTTCTTTTTACTCGTAGTTAGTATGCTTTGTTTGTTTTGCTCCCTTCTTTGTA
TCACTCTTTATTACTCCCTCTGTTCAGAAATATATATAAGATGTTCTGCATATTTCAATA
TGGACTACAATTATAGACTAAAATAAGTGAACAAGCACTCTAAACTGCCTCTACATACGT
CCGAATCAGAAAAAACTTGCTCCATATAACATCTGGCAAAGGAGAACGGAGGGAGTATTA
TTACCTAAAGAAAATTACCGTAGAGCAAGTGTTCAGAGTTGGAAAACAATATGCTCACGC
GTCAGAGCCAGTGTGCCACGCACGTGAAGTGTGGCACTTACCATATGGGGGAGAGAAAAA
TGTCCATGTAGCAGTTGGTACCGTAAACTAGTTCCTGTCCTGGTATCGAAGGGAGAAATG
TAACTGCGCGCAGAGAGGAGAGGAGAGGAGATGGAAGAAGGGACGCACCAGCTAGAAGAA
GGAAGGCAGGGAAGGCAGGATTCCTTGGCCTCGACCGATCTGGCAGACTGGCCAATGGAG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAACCGGCGGGCGAGCTCTGGGG
CTAATAAGTAGTGGAGCGAGAGGGACGGAGCAGGAGAGAGCGGCCACGGAGGCAGGAGGC
GCGGGCGCCTCTAGCTTTTTGGGGAAATGCTCTCAACTCTCTCTGAAGCCTGCTCCGTCT
GATATCCGCCGCTGTATATATAGCGGCCGGTGGCGGCGGTCGGTTCATTGCGTCTCGGGA
TTCGCACTTGCACCCCCGCCCGTGCGTGGTGGGCGCGACAAGGACGGGTTTTACACTAGA
CGGGCAGCAGACAAGGCGGGACGGGCCCCGTCCCGTCCAGCCCTCCCACCGGCGCGACGG
GGGAGGCAGCCGGAATCTTCTATCCTGTGGTGGATCGCGGGAGGCTAGCTGCGGCGGGGG
CGGCATCGGTGGTGGCCTGGTCTGGTCTGGTGGACGCTGCCATCCATCCACTGGGCGAGA
ATGAAAGCAACGGCCGCGTCGCGCCCGGTCTCCGGCTCGGCCGTGCCCGTACGTGCCGCG
CCCCCGTGCCCGCGCGTCGACGGGGGGCGGATCGCGGACGCGCTGAGTCACCGGCACTAG
AACGCCGGTGGAGTCGAGAGGAGTAGTGCCGAGCTCAACTGTTGTTCCTCTCCACACCGC
CGTGCCTTGGTCTTGGTGCAATGCAAAACGAACGGAGCAGGGCGGTCGATTTTTCTCAAC
CTTTGAATTGATGAAACGCCCGCTCGGTTTCGGTTTCAACGACGGTAGGTAAGGTAGGTT
CATGGACAAGGAGGCGCCAATCATCGAGAGCCTCGGTTGGAGCTAGGGGACAAGGACGCC
ACCAACAGAAATTCGAGTCAAAGATCTGCTGAACCACCTCACTGCCCTACTGTTTAGAAG
CAAATACACAACTAGTAAGTACTACTTCCTCCGTTCCTAAANNNNNNTCTTTCTAGAGAT
TCCACTAGTGAACTACATACGGATGTATATAGACTTACTTTAGTGTGTATATTCACTCAT
TTTGCTTCGTATATAGACGCTTAGTGAAATCTGTTAAAAGACTTATATTTAGGAACGGAG
GGAGTAGTATATGTAAAGTTCAGATGCCAACAAACTGCTCGCGCCAAAGCTGCAAGCTCG
GACGGTATCTGTAGGGCAGATTCTCTCTGCGGGTCATCCATGTACTACTCATACTATATA
GGAGTATATATGTGGTTATCAGATAAGATGCAGATAAAAAAATGCAACCAGCGGCCAACT
GGTTTGTGTGGGACTCTGGGTGGTGTCCTGCACGAGGCCAAAGAACACAGTTTTGTATCG
GCGTGGCTGATCGGATCGCGACGTGAACCCCGTGAACTGCCTTGCCATGCCTGCCAGGAA
GCAGACGATGCACAGGCAGGAAGGCTGACCTGACCTGACTGATTGCAAAATAAATAACAC
TGCCTTGTTTGTGCATTGTTCTGCTATAATCTACTGTACTACGGAGTACTCTGGATTAGA
TAATGTAGAGCGTAATAAGTTAAACCGCCATTGCATCAGCTTGTGCTACGTACTGCGACA
GCCGACAGCGAAATGATCCCCTGCTTGACTTGTTCCTGTGTCCAACGTTAATTATTGCAA
AGCAGTGGACGCCCCGGCCGAAGAACGAACACCGTGCTTTACTTGGGAACGTCTACGTGG
GCCTAAGATGGAGAGATACACTCTGGGTCCATTAGGTATTACTAGTAAAAGGGCCCGTAC
GTTGCATCGGGTGTAAAAAAAATATGCTTAGACAGTTGGAAAAACTATCACTAAAACAAC
ATTGCAATCAGTCAAACAGCCATATAAAAATAATTTTGGTTTAAAATAATTTTTCAGTTT
CTAAATCCAATATCA