morexGenes - Barley RNA-seq Database

Contig contig_53642
Source Contig contig_53642
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_53642 (5799 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_53642

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_67798	1	2114 bp	MLOC_67798.1	Available	Available	LOC_Os09g35600.1, FRAME:-3, EVALUE:0.0, 13109.m03484 protein MATE domain containing protein, expressed
CDS Structure of MLOC_67798

Contig Sequence (5799 bp)

>contig_53642 5799 assembly3_WGSMorex_rbca.fasta
TACGAAGTTATTACGTGCTTGATCATAGAGCCGCATGTTAGTTGGGCCTTGCCCTTATTA
CTNNNNNNNNNNNNNNNNNNNNNNNNGCATATCCTACTACACTGGCAGAGGGATACATTT
GCATATGAAGACGGAGTTGACGATGTTTATAGCTACTCAACCAAAGGTGCTATGTCATTG
GACATACTGCGATGGGCGATTAATTAGGCCAAATCGGTTGATCCAGATCAGAGTGCTAGA
TGGCCAAGTATAGGATTGTCTGGGTCTCCTGATGACGAGTCGACCGTCGTGATGGCATTG
GCGACCATCGTTCTGGAGGACAATGAGGATGAGGAGATGGTGGATGTTGCCAACGAAGAA
TCTGTCGAGCCTCATTATGTTGGCAATGCAGAAGCAGTGGAGATGGTCTTCAAGGCACCC
GAGCTAGGCGACCGTACACTACCCCTGAAAGTCGACGATTACAACCCTCAAGGCTACCGC
CGCTCCAATTTCATTCATGCTCACCACTGCTAGGATGTAGTGCTTGTTGGGACGGATGTA
AGCTCGATTTACCCCCCCCCCCCATGCATATCTAGTGAAAATTGTACTCAATCTCGTTTG
ATGTAGCTCAAATCCCTAATCATATATGCCTAACTCAAGTACCAAATTGTACCTCAGAGG
TGGATTGGATGTATGTTGTGTGATGCGTAAATCAAATGTGGGCATGATAAATCGATTTCA
TCGAGGACAGGGGGTTTAGCGCATTGACGAACGCCTGCCGGTGAGGTGATGAGGTCATTG
ATTGACGTCAGGGCTCGCCATCCAGATCTTCATCCACTTTTCGCTGCCGCTACTCCTCGT
CCACATCTTGTGCTCATCATCGTTGGTGTGAGAGTTTGAAGAGGGGAGGGTGAGCAGTGA
GAGAAGGGAGAGGAGAGTTATGCCGTCACTTTGGAAGCAACATGACGTGTGGAGCGTGGA
CCTCGTGTGCACCTCAGACGCTCGCGTACCTCGAGTTGCATCGCTCGGGACGGGCTATCA
AAAAACAACGGATTTGAGGGTTCCTCCTCAGCCAGGCCCAGGACGGGCTATCAAAAAACA
ACGGATTTGAGGGTTCCTCCTCAGCCAGGCCCTGGGGTGCTTTAACGTTCGTACGGACCA
AAAATTTTATACAAAGCACACAACCAAATAAAGAAAAACTGCACGGGTCGGGTTGGACAT
AATGCATGTAACCAAATGTACCCCTTGCTCTGCGAGCCATATGATGCATACAACTTTAGT
ACCGAATCTTGAACAGAACTAAAGTATGCCGAATCGCAAAAGGGCTATCCCCTTTTTCAA
AAAAAAAATGGAAAAGGGCGTGACAGGTCAAATAAAAAATCAAGTTACGCGCCAGCTGCA
CAGACTTTCCCAGAGCCGAGCAAATATTTCAGTGCGAAAGATTTACTGGGATCCAGTGTA
GAACCATCCATCTCTCGGTAGTCTGTACTGGTAGAGTGGTGGAGTAGTTAGTATATTCCT
GCTACTGGTTCCCAGAACTCCCGAATACCACGTTTCGAAAACTGGCACTGCGTGCTGATT
GTATGTAATCCGTGCGAATTAGGCGCATGGAGCAGAGGTCACGAAACTCCATGGGGAGCA
CGGATGCAAAATGTTACTCCATCACTACTACTACTACCACTACTCCATCACTGCCAACAT
TGCAAATTTGGAAGTTTATCTGTACAGCATGACGCAGCAATAAGGAGAATGCACACCATG
GACGACGGGGACAGCATTGTCCAAAGAAAGGGCGGTTTTCTAAGTAAAGAAGGCGCCAAC
AGAGAAGCGGTGTGGCTTGCTTGCTTCTGCTGTTAGGGACACGGGGGAGCTTGACCAGGA
TAAACAAGCTGGGACAGAGGCCAGTACAACACTTATGAACCTCCTCCTCACACGAAAGAA
AAAAAAACTCCTCCTCCTGCCCCACAACCACAATAACAACCCTTTGCACGTGCCAGATGA
TGAAAGTTTAATCCTGCGTCAATGATTAAAAAATCCCAAATTTAAAGAAATTCATTAATA
ACTAAGATCAGCACATTGAGGACCTACTATTAGAGATCACCACGGGAAAAATAAAAGAGA
TTGTTTGCATTGCTGTCAAATCTGCAGGCAACGCTGGCCAGTGGCTTACGTTTAATTTGT
ACACCGGCTACTCTCTTCGCTGTAAACACTCTCGGCTCTTCTCTTCACGCCCTCAATCCA
AAGAGGAAGAAAGGAGCCAAAGATGTAAGGAGATTGCAGCTTGCATTGCTCGGAATCCCC
CAAAAAAGTTGAGTAAAATTACAAAAACTAGAGAGAAAAAAATAATCCTATAGCTAAAGA
ATCAATCGAGGATTCAATGATCCAAGAATCGATGCTAGCTCCTCCCTCGCCCGCTACACA
CAGTCGGCCAGCACGAGCGATGAGTTGTCGGCATCTGCTTTGGCCGCTTCTGCATGCTTT
CTCTTGTCGCCGTCGACAACATCGCCGGCATTGCCGCCGGTGAGCTCGCGCGCGCGGTTC
GTCTGCTCCTCCCAGTCGGTCGCCAGCACGGCGCGCAGCATGAGCGCGGCGCACACGAGC
TGCGCGGCGAGCATGCCGCCCCACATCCCGCGGAAGTCGAGCCGCCCGGGCCGGAATGCC
AGCAGCAGCGCCACGGGCATGCCCACGCCATAGAATGCCGAGACGTTGATCCTCGCCGCC
TTCTCGGGACGCGCGCTGCCGCGCAGCACGCCGCACCCCGTGGTCTGCGGACAATTGCCC
AGCTCGGCCAAGCCCAGCAGCGGCAGCGCGGCCGCCGTGAGCCGCAGGATGGCATCGTCG
GCGGTGAACATCCGGGCCCACACGCCCCGCACGGACACCGCGAATGCGCATGCCACCAGG
CCTAGCACCGCGCCCAGACCGAGCCCGACGCGCGCCACGAGGCGCGCACGCTCTGGCCGG
CGGGCGCCGAGCTCGTGGCCGACGCGCGTGGACACCGCGCAGCTGAGGGAGTGCGGGAAG
ATGTATATGAGCGATGTGGTCTGGATCAGCACCCCCATGGCCGCCACGGCTGCCTTTGGG
TCCGCGAGCACGCCGCAGAGGAGCACCATGATCTCGTACCACCACCACTCCAAGCAGACC
GACATGCAGCTGTGCACGGACAACCTCACCAAGCTCCACCACTCCTTGGCGCTCTCGTCC
TCGGCCGCCGCCGCGGACGCTTTAGTCTCGCCGTCGTCATGGCCGTACATTCCGAAGAAG
CACACGTACGCCACGAGGAAGAGCAGGAAATTCAGGTTGGTGCACACGGCGCCGAGCGCG
ACGCCGCGGATGCCGAGACCGAGGACGTCCACGAGGACGAAGTTGATGGGCACGTGGAGG
AGCACGGCGGCCGCAGCCGCGTAGGTGAGGGGGAGCGTGACGGACTGCGCGCGGAGGTAA
ATGCGGAGCGGGTGGAGGAATGACTGCACGGCGAGGTCGGGGAGGGAGCAGAGGATGTAG
GCGTACGCCGTGGAGGCGATGTCGGGGTCCTGGCCCGTGGCGACGAGGACGCGGTGCATG
GCGACCCAGAGCACGCTGATGGGGACGGAGGCGATGAGGAGCAGCACGACGGTGCGGCGG
AGCGCCGCGCGGAGGAGGTCCGTCCGGCCGGCGCCAAAGGCCTGGCCGCAGACGGGGTCC
ATCCCGCCGGCGAGGCCGGAGAGCACGGAGTAGCCGGTGATGTTGGCGAAGCCGAGCGCG
AGGGAGCCGCCGGCGAGCGGGAGCTGTCCAAGGCGGCCAAGAAAGACCATCGACACGAGG
GAGCGCAGGTAGAGGAGGATGCCCGCGCCGACGATTGGCGCAGTGAGGCAGAGGATGGAG
GCCACCTCAGCGAGAACGCCGTCGCCGGCGGGCACCGTGGTCGTCTTGCGGTCCCGCAGC
CTGGGGTAGGCCCTATCCGGCACGAGCAAGGCCTGGTGGAGGCATTGCGCCGGCTCCGAG
CAGTGGCAGGTGGCCATGGCTGCCCGGGCTGGTGTGCGGCGCCAAGTGTTTGTGCCGGGC
CTCCGGTTAATCTGTTCGCAGCAGAGAGGCAGCCGGCTTGGTGGGGGGGGTGATGTGGGC
TGCTGCGGGGGAGTTGACGCTATATATAACGGCTGGGCGCCCTGACGTGCATCGAATTTC
CTGTGGGCCAAGGAGGGAAATTGGAAAATTCGAAGGGGGAAGTGATCCAGCTAGGAAAAG
GGTTGCAGTTCACGATGAACACTGAGTCGCACTTGTCCTCGTATCAACTCAAACGTGCGG
TGCTCAGTGAAAGGCTTGGAATGTCGCCGCACAAAAGGCGTGGAAAAAATCAGTGCGTTC
AAAGCTGATTTGGACTGTATCACACAAACTCTCTGCTCACTGACTACTACAGTATCTAGC
ATTTGGTCCACGTGACAAGATCGTCTCTTGCGGGAGAGATCACTGATTCGCAAAGTTGCT
GCTTTGGGAATCATCTACAACTTTATTACTACATTAAGTTCATATTATTGATTGCAATTT
TTTGTAGATACAGCTTACTACCAAGCTGACTGCTTGGTAAATTCATATAATTGAGTGCTC
CCTTTAATTTGTTTCTATTTACTCCGTATGTTAGCTTTGATTGATATCGAACTTTTATCA
AATTTGTGGAAAACAATATGCATATTTACAATAACAAAACTATATGACGTGAAAACGTAC
GCAATGATGAATGCAATGATATTGTTATGGTGATCTATGTGTTAATATTTTAAAAAGAAT
TATTTTGATGAAAGTATTTAACGTGTGATGTTATACAAACCTAATATGCAAAGTAAATAA
AAACAAATAAATTATATACGAAGAGATGGTGATCAAGTTGTTCGTTCTAAGGACAAGAAA
CCTCACAAGGATTCGAACAAAAGGTTCACCCTGGTCCAACACGTCAGAGGTGTTCATTAT
GTGAGTTGTGAGGGCATGATACCACACACTGATACCGTTGTGGGATTCTCCCGTGTCCAA
AATACTAGAACATGTGCTTGTTAGGTCGCTTGTTAGGGCGAGAAATCCCGAGTGATAAGA
ATGTGGGATTCATCCCATCAACATATTGCAACGTGTGTTCGTTGTACCGATGCGTTATCT
AGGCCATATAAAGTTGTAAAATGGAAATGGATTAATTATGGTGTAATATATTTTCATTAT
CTTGTATTTATCCATGTTACCAAAAATTAATCAAAATAAATAAGAAGAACGACTATGGAG
GTCGAGAATGACTTCTTTTCCGCGAGAAAAAAAATAAATCCTAGAACAGTATCAATGTGG
GATTCACCCAATCCAATAAATTAGATCGTATGTTGGTCGTGCCATCTGTACATTTACTTT
GTGTATAAGTGCAATATTCTCAAATATATTCAAAAAATCAAACAAAATCAATTTAGGAAC
AATTGCAATTAATGCAAACAATATGCTACACAAAGTCAACACCAAAAGTTATGTGCTCAA
CATGTGAGGTTGTTAATCAATAATAATTGGTTGTTGGATGCCTATCGTGCCAAAGATCTA
TTTATCTCACATCAACAAACATATATGACTTTACCATGAACCGAATGTGCACGGTGCCAA
ATATGTGTTACCGTTTCAAATGGAACTATGCACACCCTATGTTTTCACTTGTCCGGTGAA
AATTATTGGAAGCAAGGATTGCATAAACAAGTTCTATCTCCTATAAGAACCAATGTTCAT
ATCTGTTTGACAATAGGGTCAATTATCTCACTAGAACAACCTAACCATGCATATACTTAG
CTTTTTTGCACAAAAAAAAGGCACCCCCCCCCCCCCCCC