Map Locations of contig_53624 (10903 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_53624

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67786 1 243 bp MLOC_67786.1 Available Available None
MLOC_67785 1 1668 bp AK354090 Available Available None





CDS Structure of MLOC_67786






CDS Structure of MLOC_67785






Contig Sequence (10903 bp)

>contig_53624 10903 assembly3_WGSMorex_rbca.fasta
AATCTACACTCTAAAATATGACTACATACATCCGTATGTAGTATATAGTGGAATCTCTAA
AAGGTCTTNNNNTTAGGAACGGAGGGAGTAGTTTATTCCGGCTATGTGATAAAATCGGTT
GTCTCATTGGATCTAATACTCAAATCAATCTGACGGACCTACCACCTGTAGTAAAAGTTG
TGTAGGATCCAGTTTGAATCCTTGCTCTAGTAGTTGGCTAGCTATACTTTCTGGTAGTAT
ATGTTGACCTCTTTAAGCTGGATGTAATAGAACAATGCTGAAGCCAAAAGCGAAAATAAG
TAGAAATATGATGGACAAAGGTGCTGAGAGCAAATGAGGATTGGGGAAGTAGATATTAAA
TGTAGCTGTAAACTCGACATACTCCCTCCGTTTCTAAATATNNNNNNTTTTAGAGGTTTC
ACTAGGAAACTACATACGGATGTACATAGACATACTTCAAAGTGTAGATTCACTCATTTT
GCTTCATATGTAATCCCTTAGTGAAATCTCTAAAANNNNNNNNATTTAGGAATGGAGGGA
GTACATCGTAATACAGTTGCAAGCACCAGGTGGCAGTTACATGGAGCATGTGTTAATTCG
CAAAATGAAAGCAGTTTACCCAACACATTAGCAACATAAAATTATTTTTGCACTCTACCG
AGTTAGAATGTGCCTAATATTTTAGCAAATTAGAAAAAGCCCAGTTTCATCATTTTATTT
TTGCTGCTTCATGTTATACTGATATTTAAGCTACATGCATTCTTTCTTACAACCCTTGGA
TGCATATTGAATTATGAATGCCCAAGTGTCCCATATAATATCCACCAGTTATACACACAT
TTAATCGACTATATATTACTGTACACCTCTTTTTCTTAATTCTTTTTTCAGATAGTTTGG
TATTCATATGTACTCTTCTTGGTTTCTGTTGTCACAGAGCATACATGGCTTCAAAATGCC
AAGAAAGCTCCAAATGTTCCTCTCGGAGACATTGTAAAGTCAAGGCTGAAACAGTTTTCA
AGGATGAACAGATTCAAAAGAAGAGCTCTAAGGGTTTGAATTCCTTTTCTCGTGAATTGG
ATTTTGTGTCTTCTGATACTATATTTTCTCAAGTCTATGTTGAAAATATGTTGTACTGAC
AAAAATTACTTGAATAGGTTATTGCTGACCACTTGTCAGCTGAAGAAGTTGAGGACATAA
AGGAGATGTTCAAGGTGATGGATACTGATAATGACGGTATAGTGTCATATGAAGAATTGA
AGAGCGGGATCGCAAAATTTGGTTCTCACCTTGCAGAATCTGAAGTGCAAATGTTAATAG
AAGCTGTAAGTAATATAAAGGATTTCACTTACTTGCTAAAATGTTCAGTTAGCTTGACCG
AGCAGCTATTTCTTATCACAGTCCACACCGAATCACATTATTTCTGCTAAAATCTTTTTG
TGGTACATAGTTCTTCTGTTGTTCTATTGGCAATGCAGGAAAAATATATTGACATTTATT
TGTACCAGATGGCGGAAGTATTGTAAACCTTGGTCCCTTTTTGAATTAGTATAGTTCTTG
GGACCTTGAACTGCATCATGGGATAAAGGATATAACCAACTTTTACTTTCATTTCTACTA
GGGCCATTTCTCTATTCGCTTCATATGTTGTTTATGACAGATAAGATCTAGAGCCTCATG
GCTAACAATTATCTGAAGTTTTAATTTATACAGGTTGAACGCATAGAGATCAATGAACCT
GCTAATTCTTTATCATTAGCCTTTATTTTTTGGGGGTTGCTTAGGTCCATAAGAAGAGTA
TAACAGGTCCATAAGAAGAGTTAACACTGTTGCATATGACGTGAGAGTCAACTTGAGTAT
CGAGTAGCCCAAATGGCTTAAACTTGTCTACTGTCCTCAACGTAGTATTAATGCGAACAA
ACTATTGAAGATTTGCATTTCTGATGTTTTGTGGTTGGATATTAGGTGGATACAAATGGT
AGAGGAGCACTAGATTATGGTGAATTTTTGGCTGTCTCACTTCATTTACAAAGGATGGCA
AATGATGAGCACCTTCGGCGAGCCTTCCTGTTTTTCGATAAGGATGGTGATGGTTTTATT
GAGCCCGAGGAGCTTCAGGAGGCCCTGGCAGAAGATGGGGCGGTTGATATCACAGAAGTG
GTGAAGGACATATTGCAAGAAGTTGACACCGACAAGGTGGAGGTTCATTTGCACTTGTGC
CAAAAGGAAGGTGCAACCTTCAGACTGTATCCCTCTCGATACTTAACGCCTGCTTTGATT
GTTTCTGCAGGATGGCAAAATTAGCTTCGAAGAGTTTGTAGCAATGATGAAAACAGGCAC
AGACTGGCGAAAGGCTTCGCGGCATTATTCGAGAGGACGTTTCAACAGCCTTAGCATAAG
GCTTATCAAGGATGGATCTGTAAAGATGGGAAACGAGTGAAATCGCACAACACTTGTAGC
GGGTGCTCTTACTCCGGGCACGCAAGTCCGGCCATTGGCCCCACTAAGCAGAGACCCTCT
TTCCTTCTCTAATGATTATTTTGGCGGAAATTTAGATAGCCCCCACCCCCACCCCCCACC
CACCTGATTGGCTTACTCGTGTAAGTAGCTTTCCCGGTATCGCCGAGTGAGGAGGGGCAC
GCACCGAACCGATGCACCAACAGCTGTGCGCCTGCTTTGCGGCTTGCCTCCTGTCCCGCC
TGATGATATCTCCTTTTGCTGTACCTGATGCTAAGTGTTGTACAATATTTGGTTGCTTCT
TCCCTCTCAGATACAGTCTGTTCGTCTCGATGGATTCTTCTGTATTGGTGGCCAAGGACT
AGATACGCCTAGTAGGCCACTCACTGTTAGTGCAGCTTTGCTTTCAACTGTACCGAAACA
GCATATTGCCAAAAGGAAAGGCGCCATGTAGCTAGTGCAACTTTTGTATAGTGCTGGGCA
ATGTGTGCCGTTTGTTCTATTTACACTACTAGCAGTGCACCAGATTGTCTGAGGGGACGC
TGCTGTGTTGCCGTCTGATGCTGCAGGTCTCACGTACACGCCAAGACGGGATCAGGGTTA
CCCGCAGTTTGTCACGCTAGGATTTTAAGAGGAGTTCACATGGTTATCGTCTTTCGTGTA
CTTGAAGCCATCCAGTGTTGGTGAGTTAAGCCTCGCTGCTCCTGGGGCCAATGATCCCGA
AATCATTGGACATTGTGTGTCATTTCTCCCATTTCGCTGACTAATCATGCATCCTTTACA
CTGAAGCTTCAGCTACCACTGTTTTCAAACGGGCAGGAAAACCGAAAGAGAAAGCGGCTT
GTTTAGACAGCGCATTCGCCTTTAACATTCCAATCTAATAAAGTTTGGAGAACATATTAA
AGGCCTGCTGGACCACTGGAGATGTAATACTAGGTGACAGGTTTGGCGAGCTCAAAACCA
TTATTCCCCGAACTTTTATCATAGTTAGAGTAGATATTTGAGCATAATAATTGAGTAGTA
GTAGTCGTATTCGCGGAGGCCGGAGATCAGACCTTGCAGCCGTGTCTCAAATTTTCCTTT
TTACATCCACGTAATCTCATATCCATCTCTTATTTTCATATACAAACATGTAAAATAAAA
TGCCTACATATTACATAGTACTATACTCTTGTCGTCATCGTCAGAGATGGCTTGAGCTGT
CCCCGCCGCCTTTATCTATTACCGATGAAGCCGTCTGGCATTGCAGCTGCCTCCGAGCGG
ATGAAGTTTAGGATGACCAGTTGCTCGGGCCACAGATCCACGATCGTCGACGCCTCCTCC
TCCCCCACATCTAGCAGAGGCGCCTCCTCCGTCGGCTCCTACTCCTCCTTCCCCCACAGC
TAGCGGCGGCGCCTCCCCCACAACTAGTGGTGGCGCCTCCTCCGCCGGCTCATGCTCCTC
CTCCTTTTCCACCCCTAGCTCCTCATCTTCCACCCAGCTCCTCCTTCTCTTCGTCCTCCA
CATCTTGGAAGTCCTCCTTCGGATCTAGAGGTAGCCTTGCCTCCCTCTGGATCCGGACCT
GCTCAAGGAGCCAGAGAGGCTGCTGGATTGTGTAGTGTCGACGGCGTGGGGGCATGGCTG
ACGGGCTCGGGTGGCGCGACAGAAGAGAGGAGGTGGATGTGTTGGGGTTTGGGGACGCCG
ACCGGCTTAAATAATGGCTATGGATAAGGGCGGGGAGCCGGAGCGGCGCCACGCGATGTT
TACACTGCGCCGATGGTCGAGGCGCCCGTCGGACTATCGGGTTTTCCCGACGAGCCCGCG
TGAAACACGCCGTCGGGCCGACGTAGCGGGCGTGCACGGGCTCCCCATATCCGCCCTATA
TTTGAGATGAAAATGGGGGTGCCGGTCAGCCCGGGCGTTTGAGGCCGTTTTGAGAGGCTC
GTGTAGGTTGATTTTCGTGATCAAACAGTGATCGGAGGGCTTGCTCGGGCGTTTGAGAAG
TGTTTGAGGGGTCCGGTTATAGATGCTCTAAAGATGGTAAAGTAAACATGACCAAGCTTT
GCTCCCCTTTTTACTACTCCTTATGTGTTGTAATGTAAGACGTTTTTTAATATTAGTGTA
GTGTTAAAGAATCCATATGTCCTCCTCAAACGCGCGAAACGTCCTCCGAGTCAATGTCCG
GTCAAAAAAGCTTGACCCGATAGGATTCCCATTGTCCTTCCTAAATGTCCGGAATGATCA
TCACCCTTCATATTCATCCTAAATTTGGGAACGATACGAGGGCTCGCGAACGCGCCCGGG
CATGTTCAGATAGTCCCTCACGTAGGACGCGACCCCATTCCGGATCACATTTTCTCTTTT
CTTGTTCATTTTTTCTTTCTTTTTTTCCATCAATCACGGGCATGTGACTGGACATATGAG
AAAAAATATGAAAAATATATTTCCACTGACAAAAATGAGAGTTTAAAATGGACACGTCCC
ATAGATATTTAGAGGTCATATTTATTAAGTCCGACTGTAGATGATTTTATATGACAAACG
AGTATAAATTACTGCTCTCTTCTTATTAAAGTGAACTGCTAAACCGTCTTATATTTTGAT
AGAGAGACGGTACTTAGTAAAGATAAAAAAGAGGCCAGTATTTACTCACGTTATCACCAA
ACATTGAAGAGGAGATAAACTGCTCGCCGGGATGATCACGTCTTCTTTTGTGAATCGCTT
TCCCAGTGGTCCCTCAATTAAGATCACACTCAACTCGCTGTTACTGTAATAATTAAGCGT
ACAAACAGCACGAACGCAATCTTTTCTTTTAACGAGGTACTGATCGCCTTTTCCAATCCA
CTGAGCGCCTTTTCTTTTTCTTTTGCTTTTACGGGACATATTACGTTACAAAGCAAACAC
AATGTCCATTAAGAGCATGGTTAATAGTAATATAGTAATATAGTGGAGTGGATGTACAAC
CCAGCCACCGAAGTTCAAGTCCCCACGGGCGCGAATNNNNGTTCTTATTATTTCAAAAAA
AAACTCGCTGTGGAGAGTTTCCCTTACAGTTTTTCTTCAAAAAAAAAAAAAATAGTATAG
CCACCGGCTGACTATAAGGCATTGCCATGTCACCTATAACTCATTTTATAGCTAGCATGT
ACAATAGTTGGTTAGAAGAGAGTATTATTTATTTATTATAGGGTTCAAGTTTCATTTTCA
CAAAGTGCCTAGGAGCACGTGTTAGAGCTGGTTATTAACTAAAAGCCCGCTTACCTTCTC
TCTCCTCTAACTAAGCAAAAATATACTACTTTATTCCTTATAGCCAGCTGACTNNGCTCT
ATTGTACTTGCTCTAATCAAGATCATTTAATTTATCAGTAGTATTTATCCAGCGTGAACA
CCCCATGAAGAACTGTAGCCCGTGATAATGATACATCCTGCATGATCCGCTCACATCTGA
TTCATGTTCGTGGATGGCGTGGATCATGTTGTACGTTGCCAACAACAACAATATGATGAT
GGACAATGTCCAACAAGTTGTCGTAGTCTGGATTGTAAGATATTATTGGAAGCGTCTCAA
TCTCCTAGACAAGGAGACCCGCCGCTTATATTGATAGATGGATTGGAGTACAAGTTAGGG
AAAGAAAGAAATATGCATACATAAGGAAGGGATAGAGAAGATCTCTAACTATCCTAACAT
ACCAAGACACCGTGGCCCATGTATGTCGCGTGATATATCTCTAACACCCTTCCTTAATCT
AAACCTTTGAGATTTAGATTATGTTTAAACTCTTCAGAGGATCTCGCAGGTAAAGCCTTG
GTGAAGCCGTTTGCAACTTGATCTTTGGAAGGAACAAACCGAATTTCCAACTCTTTGTTG
GCCACCCTCTTTCTGACAAAGTGATACTCAATCTTAATATGTTTATTAGTTGTGACATGG
AACACATGATCAGCAGAAAGATAAGTGGTGCCAAGATTGTCACACCAAAGACATGGAGTC
TGTGTATGATATATCCCTAGTTCCTTGAGAATAGACTTACCACATATGATTTATGTCGTT
GCATTTGCTAGTGCCCTATATTCTGCTTCAGTACTTGATCTTGATACGGTAGCTTGCTTC
TTTGCACACCATGAAATCAAATTAGGTCCAAAGAAAATCGCAAAGCCACCTGTGGACCTT
TTGTCATCCAGGTCTCTTGCCCAAACAGAGTCAGAAAATGCACTAACTAAAGTAGATGAT
GACTTGGTGAAGGTTAGACCCACACCAAGAGTATGCTTCACATATCTCAAGATACGTTTA
GCAGCCGTCCAATGGACAGAAGTAGGTGCATGAAGATACCGACACACTTTATTTATAGCA
AAAAGAGATATCAGTCCTAGTGAGTGTCAAATACTGAAGTGCTCCTACCAAGCTTATGTA
CTTAGTGCCATCCTCTTGACTTAAGGGTACACCGTTGGAGAAGGTTTACAACCCTGCAGC
CCGGCCTTGCTCAAAAGATATATTGCATATTTTCTTGAGAGAGATGAAGTCCACCTTCTA
TGTTTCTCTTTACCTCAATACCAAGGAAATAATGAAGATCTTGTGGACCCTTTAGGGCAA
ATTCTGAGTGCAAATCTCTCAAAAGAGTTGTCACTGCTCACTGAAGGAGCTAGTAACAAT
GATATCATCAACATAAATAAGTACAAATATGATAGTAGGTAACTTATTGTAAATGAATAG
TGATGTATCAAACTTGGAAGGAACAAAACCAAGCATTTGCAACTTGGAGCTCAAGCGAGA
ATACCATGTACTGGGAGCTTGTTTTAACCCATATAGAGATTTATCAAGTCTGCATATATG
AGGCGGGTGATTGATATCATCAAACACAGGAGGCTACTGCATATATACTTCCTCTTCCAG
AACACCATGAAGGAACGCATTCTGCACATCTAGTTGTCGGAGACTCCATCCTCTAGACAC
ATCAATGGACAAAACAAGGCGAATAGTAGCAGCTTTAGCAACAAGGTTAAAAGTGTCCTC
ATAATCCAGGCCATACCTCTGCTTAAACCCCTTTGCAACAAGTCTGGCTTTATAGCAATC
GATAGTACCATCTGATCTCCTCTTTATTCTGAACATGCATTTACAGCCAATCACATTTTT
ACCTGGTTGAGAAGGAACAAGATGTCAGGTGTGATTTTGTTGAAGAGCTCGAAATTCTTC
ATCCATGGCCTGCTTCCACTTGGGATGAGCCAAAGCATCATTGGCAATGCGTGGTTCACC
TGTAGGAGTGGTGGAAACCAAGCCATATTTAGTTTTATAATTGACTGGTTGAATAACACC
GGCATGCAGACGTGTACGGGGAGGCGTTGATGCAGGCACAGAGGGTTCAACAACGTTGGC
GGTTGGTGAACAGGAGGCAGGGATCCCGAGCTGCCAGAGCCGCCACACACGCCAGAAGAC
GTCGGATCGTATGTGATGGAGATTGTTGGTGAAGCTCCACACATAGCCACAGAAGAGCCA
GGACTGGAGAGCACATCATGCGTGGATCCCGCATCGGTTGCACTAGGCACGGAGGCAGAG
TCACTCGGGCGACGTCGAGCGTAGACACGACCATACCGCTTGGTCGGTTGATCGCCCACA
CCAGGTTGTAGCAGAGCAGTCGTATCACCTGGGTCGACCGTGGAGCGTGGTGTAACAGAC
GGTGAGAGGTGCAGGCCAGGCGAGGCTGGAGGAGCTCGAGCAGCCTGGGTGGTCGCAGAT
CCCAAGGTGGAGTCGGTCCAGGCCGGCCCGGTCAGGAGCGTCGAACCCGAGGAGGATGCA
CCTGGTCTGCAGCAGCTCCAACAGAGACATCCATAGTGTTGTTTGAGCTCAAAGTTGGGC
TGTGTTGGCCATGTTCATCGCGGATGTTCCCTGAAACAACAAACTCACAAATAGCAGGAG
ATATATTAGTCAAATCTTGGTTAGCACAGTCATCGTTACCCACGCGTGGAACATCGGAAA
GGTGCGGAGGAAGAAGGATAATTTCTTTCCTAAGGACATCACCAACATTAGGATGGAGTT
TTTCAAAAGGGAATTGAGTTTCATCGAAAACTACATCGCGGGAAATATACACGTGGCCAT
TGGAAACATCAAGGCATTTTACACCTTTGTGATGCGCATTATATCCAAGGGAAGACACAT
TGTTTTGAGCGAAACACGAGTTTGCGAGTGTTGTATGGACGAAGATTTGGCCAACAAGCG
CAACCAAAGACTCGAAGGTTGGTGTAATCTGGTAAGACATGAAAAAGACGTTCAGTGGGA
GTTTCATTGGATATAGTACGACTTGGCCACATGTTAATAAGATGAACTGCAGTCAAGAAA
GCTTCATCCCACAATTTAAGTGGCATGGATGTCGCAGCTAGGAAAGACAGTCCTACTTCA
ACAATGTGACGATGTTTGTGTTCTCCAGAACCATTTTGTTGATGAGCATGTGGGAAGAAT
ACATGGTGAGAGATACCTATCTTTTGAAAGAAAGAGTTCAGTCTCTCATATTCACCACCC
CAATCTGACTGCATGGCAATAATTTTGCTATCAAATTTGCGCTCAACAAGTGCTTGAAAA
TTATGAAACACTTGAAACACACCAGAACGTTTCTAAGAAGGTAGATCCAAGTGTATTTGA
TAAAGTCATCAATAAAACACACATAATAAGTATGTCGACCAACAAAGGAGGGTGTTGGAC
CCCATACATGAGAAAAAATGAGTTGCAAAGGTTTTGTAGACACACTAGTGGACACTGGAT
AAGGCAACCGATGACTTTTAGACTTTTGACATGAATCACAAATGGTTTTAGAATTTCTCT
CACCAACAACTGGAAGATTATTTTCACTAAGAATTTGATGACCAGTCGGAAATGAAGGAT
GACCTAAGCGATTGTTCCACTTTTCAGCAGAAAGCTTAATGGCCCCGTAGACTTGTTTAT
TGTACTCACAATACTGGGAAGCAATGCATAGAGGCCTTGCACGCAGACACCTCTATGAAG
AATTTTCTTCGTGAAATTTTAGAAAGACATTGTTATCAAGGGCAGTGCGATGAACAGATA
ACAAGGTTTTGGAAGCATTGGGTACATGCAGTATGTCATTGAGCTCAAGATTTGTTTTGT
GGGGTTTTGATAACTAAACGGCCAATATGACTTATCTCCATACCTGCACGATTTGCGGCG
CTGTAGACTTGATCATGGCCACGATATTTATCATGCATTGTCAGCTTCTCCAATTCACCG
GTGATATGATTTGTGGCGCCCGTGTCCATGTACCAATTGGTATCGACGCCGTATGAGACA
TCACTACAGCTGCAATTTTCTTTTTCTGGGCATTGTTGTCATCGACATAGTGACAATCAC
AATCCTTTGTAATGTGATTTGTTTTCTTACAGATTTGACACTTATTCTCATAACCTTCAT
ACCCTTGGAAGGGGCGACCCCAATTGTTGTTCCCGGGGGGACGCCGATTGTTGTTGTTGT
CGCCAGCGTGGTTGTTCTGATGGTAGTGGCCACCACCACCACCACCTTGATGGCCTCCTC
CCTGGTTCTGTTGGAAGCCATAGCCCCCGCCAGAGTTAGGGTGAGGGTTCTGGTAGCCAC
CGCCACCGCCATTGCCGCTGCCAGCGCTGTGGCCATTGCCACCACCAGCGCCTTGGTCGT
CGCCGTCTGGGCCAGAGCTACCACCTCCGCCGCGATCGCCGCCCTTGTGGTAGCCACCCC
TGCCGCCACCACCACGACCGCGCAAGGCGGCGTTAGCGAATGAATTGAAGCCGGAGTTGC
CATGAAACATCTCAACTCGCTAGTTAAAGTTGGTCACGAGAGAGAAGAGGGCGTCGATGA
TGATGGGCTCGGTGCGGACGTCAAGTGTGAAGATGATAGGTTGGTAGTCCATGTCGAGGC
CGTCGACGATGAAGGAGATGAGCTCCCCATCCCCGAGCGGCTTGGCCGCTGCCGTGAGCT
CCTCGGAGAGGGAGCACAGGTGGCCGAAGTACTCCGAGGCCGAGAGGGAACCCTTCTGAG
CGTTCGAGGGTGCGACGCAGAAGTTGTTGAAGCGGGACAGCGATACCGTAGAGAACATGG
TGGCCAAGGCAGTCCAGATCGCATGAGAGGTCTCAAGAGACGCGACCTTGACGAGAACCT
CCTTGGACAGATTGCGCAGGAGATAATCAACAATTTGTTGATCTTGGACAAGCCAGGGGG
CATAGGCAGGGTTAGAGATGACCTGATCCTTGCCATCTTTGTCTTTGACGGTGATCGTCC
TCGGAGTCTCCTCAATGGTGTTGTCGATGTAGTCGTACAAACCAGGGCCCGGTATTTGGG
ATCGGGCTTGAGCTTTCCAGAGAACATAGTTCGTCCGAGTAAGCGGCTCGGAGTATTGTA
GTGGAGGCTGGATGGGGGTGCGACGGAGGAGGTGGAAATGGCGATTAGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGCTGGGGGGGAGGGGGGGGTGGGGGGGG