Contig Data
morexGenes
Links



Map Locations of contig_53621 (6561 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_53621

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_67781 5 4549 bp MLOC_67781.1 Available Available LOC_Os07g41720.2, FRAME:-2, EVALUE:8e-98, 13107.m04353 protein nuclear transcription factor Y subunit, putative, expressed
MLOC_67782 1 330 bp MLOC_67782.1 Available Available None
MLOC_67780 2 2129 bp AK360169 Available Available None





CDS Structure of MLOC_67781






CDS Structure of MLOC_67782






CDS Structure of MLOC_67780






Contig Sequence (6561 bp)

>contig_53621 6561 assembly3_WGSMorex_rbca.fasta
CGCCGGCGCCGTGGGCCCCATCGCGGCCTCGCTGCACGAGGGGCCCGTGCTGCTCTGGGC
CGGCCGCCTCTGCGTCTACTACGCGCTCATCCACATCGGGCTCGCGGGATCCCCGCGCAG
CCCCTTCCTCTCCCACGGTAATAGCATCTCGCGCGCGCGCCCCGCGAATGATGGGATGAT
TCGTGCGGTTCGGTTCGGAAAGGGAAATGGGTTTTTTGATCTTGGTGTGGTGTTGCAGAG
ATTCGGGGCGAGGACGGCGCCGGGGACAGCGACCTAGGGTTCTCCAAGTGGGCCGACAAG
CTCCGCGGCGGCGCACCAGGTATCCGTGGTGTGGATTCAAATGTTATCGACGATGATATG
ATCTTTTGTGCACCGCTGCTCATGCTGCGTTTAGTGGAGTGGAATGTGAATACTGTGAGC
TGCGAACGGTACAGTTTGGTATCCTGGCTAGTGGGTCTGGGGTGGATTGTGGATAAGGAA
GGATATATTCTATCTAGAATCTGTTGGAGTGAGCTTTCTGCTCGCTACCACGGATCAAAG
CACATGGTGATAAACAGCTTTTCATCTCTGGATGAGGTTTGGTCAAACTGGGGCTGAAAA
GGTGGAAGCATTTTGTGTGTGGGTGCTCCTACTCTAAGGGTTATGACATGAGGGGATTGT
GGGGAAATTTTGTTTGGGATATAGGTAGAAAAAGGCGACGAACTTGCAACTCTGCCATGC
CTCATGTTCGTCAGGGTTTGTTTGCTGTTGACAGGAGAATCAGAATGCCTCACGATAGGA
GATTGCTACTATCATGGAACAGAAACATGCTCGTCAGGGTTTGTTTGCTTTTGACATGAG
AATCAGAATGTTCACCTGTTTGTGGATTGTTTGTATTACTTAGATGTGTGGCTCTAAGGC
GTATTTTGGTTGTCAAATTCAAGCTTTGACCAACAATTAAAGATGGGGGATACCGCTATT
CATGCATGGATGGACGAGTGACCCCGCTGACAACATCAGTAGATGACTTCTCTCGCGGGT
AGTAGTCGACCTTTGTTAAGCTTCGCCAGAAGTATCTTTCTTATGATTGTGATTTTGTAA
CTATTGATAAAACATCGTTAAAAGTTGAAACAAAGTTACAGTCAAAGCTATAATTGGTAA
GTCAAGTATGCCTTGTCTATCCGGACAGAGGGAGTACTGTGCAAGGAACTCTCAAACTGG
GAAGAGTACTACATGGAGGATTTGTGGTCTTGATAGTTTTCTTGGCTCTGTTTTTTAGTA
CTTCTCAGTTTTGTCACTATATTTTTCTTAGTATCTCTTGTGTGTATGGTATGGAGGATA
CTGACAATCGCTTGTTTTTCTTCTTCACGTTGACATATCTAAATTCCAGTGCTTATATCT
CTGTATAAATACTTTTCCAAAACTGTAGTAATTATGATTCCAATTTCTTTGCTTCTTTTT
TGTGATACACATTTAACTATCGAAAGGACCTAAGAACCCATTTTTGGTGTCGAACCTCAC
CTTACGGGGATCAACCTGTTTCTTTTTCTTGATATAATACAGCCTACTGGTAACATGGTT
AACCTTTCAGGCTTCATGTGTTAAATGCTACTCCATCTGTAATCTAATACTCCCTCCGTC
CCNNNNNNNNNNNNNNAGGTTTGTCTAGAAATGGATGTATCAAAATACTATAACATGACT
AGATACATTCATATCTAGACAAATCTAAGACAAGAATTTTGGGTCGGAGGGAGTATAAGA
TGATTTAGATCAGATCTAAAACATCTTATAGTATTAGTTTACAGAGGGAGTATTCCGTTG
TTTCTGTATCGAGGACGCAGGAGACAACGCATACCCAAATGGTTTGACAAGTGATTCACA
AGGAAGCATCATGATTTTGGTGAACACCAGAATGTTGGATCCAGTACAGTAGATATGTGT
CTTTGATGCCTTTATGGGGACAAGAATCTTGAAAATATTGTAGAAGATGTGTAATTCTAG
TTCATTGCCCATTATATATGGTTTCATACATGAAGCTGATGCATGCTCTTGTTATTCAGG
TGACAAAGAAGGCCAGGATAAATGGAAGCTCGTCAGCAAATGGAAACCCACGACCAAAGG
CACACTCAAGAGGATGTACCGAGTTCCTTCGAAGGAAGAAGGTCGCCGAATTCTTAAAGA
AATTGCTTTGGTTCTATCTGAAGATGACAATTTTGTGGATGCTTCCACTCACAAGGTGAT
TTCATTCTTCAGCCAGGAGAAATACATTTCTCTAGCTGTTTTGTCTGCTTCGCATCTCAC
AAACTGAGATGTTATCTTGTTATTCTTCTAAAATCCGTGCTCTGTTAACTGAATGTCTCA
ACTTTCAATCAGGGTTGTCAAATCAGGAGGGAGAGTGCGCATGGAGAGAGCGTATGCTGC
TACAATGTAAGAGCTTTGTTTGATGAGCTCCCTGGCCCTCACCTAGTTCTGGAGATTACG
CCTTTTCCTGTTGGAACCCTTACTGAGAATGACTACCGCAAGGCCGAGAGGCTTGAAATG
GTGCTGAGGATGAGTGCCTCCCTTTAAACCTGAAGAGCCATTTTCCACTTCCACCTCATA
ACTCCTTTTTGCCCAGATTGTAAATTGTCTACCATTGGGTCTGTAAATTGATGTTGTGTT
GCTAAAAGCTCCCCTTTAAACCCGAGTTCTGCTCAGCATTTTGAGATATTTGAGGCCAGA
ACTCTTTTTCTTTTGTACTCACAGGCCTTCCTTATTGAGGGAGGCATACTGAATTTCCAT
TTGCTAGTATCTGATATGCAGGCGATTTATTCCTAGATTTCACCTTCTGGCACGTGCAAC
ATTGTTCAGATTCAACATCTCTACCCTATTGCCAGTGAAATATTTTTGTGGCAGAAGCTA
GAGTTTGCTGATGAACGTTGAAGTATGAGATAACAATGAACAATAAGATGAACTCATGTA
ACATCCACTAGACCATCATTCACCTATAATTGAGATCACTTTCAGGTTCGTTTGGAAATT
CATGTTTCAGAAACCCAATGTGATTTGTGTTTGTGGCAAGTCACCAAATCAAATGCAAAA
TGTGATACAAAGTTGCAGGTACTGAAATCAGGCAAAGCAGGTTGCAAAGTTGCTTAACTG
CAACAGCATTCCTCAAAAGCTTGAAGCTCAACCACCTCTGAGTTAATTACCAGATACATT
CACAAATCACAACAGGTAAGGAAGGACAGGCCTATGGTGTCTCAACCATGCCCGACTCCG
ATCTCTGAGATCATCAGGGTGTGCCTTATTTGAATAAGTACACACAAAAGAAATCTGATG
AAGATTTCAGTCTCCACATAGAGTGTCATCAGCACACCAGTGCTTTCAACTAGATGAAAC
TCAAAAGGACTAATAACAATGTCTTGGTACTGCAACCACATTTCCGGAACATCTTCATAA
GCCAAGGATGAATTGCCACCGGCGCCGCACCAGAGGATGCTTTGCTTTACCTCATCATGG
AAGCGCGTTGGTGCATGCCGTTCGGGGCCAGCTTCCCGTTGCCGTTCAGTGCAGCGAAGC
TAACCGTGGGACGGAAGCCAAGTGAGGGGAAGCAGGCGCGCTCCTGATTAGCCAGCATGC
CGGTTGTTGAAAAGCTTGACATGTTGGAAGGAGCTGATGCCAAAGGTGCGAAGGTGGGAC
TACTCTGAAGGACTGTATTCTTGCCAAGGACCTTTGTACAGCTTGCACCACCTGAAGCCT
GCTTCTGCTTCTGCTCCTCGAGTTGCTTTGTGTTGAGGAACCGCCCTCCTGTTCCACGAG
CTCGCTTCATGGCATGGCGGTGCCGAGATTCATGAAGGTATGGCTGGATGGAAGGGGCAA
TGTTAGAAAAGGTACTTGCTAGGTAAAACTTATAGTTCTAAGTAGATGGGTACAAGCCTT
CAGAAACTAAAATTCTGAACAAAGGAATGTTGCAATTTGCCTGCCCGAGGTTTCTTATCA
AGGTTTGTTACGAAAGTGCTCAGGTCAGATTAGTACTATGAATATTACCAAGGCAGCCTA
ATAAATCTATGCATTGGTGCAGCAGTCAGCAAATACCAGAGAAAACAGAAGCATTTCTTT
ACAAAAAAAAGTATCAGGAACAAAAATTCTTTAGTACTCCCTCTGTCCCAAAATAAGTGA
TGTAAATTTAGTATTAAGTTAGTACAATTTTTGTACTAAACCAGCGACACTTATTTCAGG
ATGGAGGGAGTATATTATATTACCTTCCGGGCTTTCACCAGCTTATTTTGGGCCTCCAAT
TTAGCACGTATCTGTCTCCTCCTAAGAATTGCATGGTATTGCTTCGCATTAACAAACATT
GGCTCTTCTGCTGCAGGCTCAACAGGGAGCGGCACACGAGAGTTTGTTGCAGCATTTAAT
TGGGGATGAACCTGGGTAAATAATACACAAATCGTTGATGTAGAACCATTAGTCTTTTTC
CGATAAATATGACGAGAAGGGGGGGGGGCATTTTTTAACAATCACATGAAACTATATGCC
ATAAATATGACCACTATCATGTGCATTGGCAGGATCAAAATATGATTTCAGTTAATCATA
TCCATTGGTTTCCACTATTTCTGATGCGATCAATAAAGCTCAAATCCTTAATGTGGAAAA
CAATGAAAGAACTGTCTATGCATTCCTCTTTCATTTGAGAAGACACTTTTTGTGTTTATG
TTGCTTCTCAACAGTAATTGAACTCAGCAATAATTAGGTAGGAAGATTATCTTCACAATG
AGGCTAGGGCCCGGTCATGGGCAGCCCAGCCCGAAAAACCCAGGCCGGGTCGGGCTTGCC
ATTCGGGCTGGGCTCGGGCCTTGTTTTGCAGCCCGAAAGATAGTTCAGGCTGGGCTCGGG
CTTCTCTTTTTTTGTATTTCGGGCCGGGCTTGCACGTGCGTACACCCAAAAACAGCGTTC
GGGCCAGGCTTTCGGGCTTCGAGCCTGAAGAAACAGAGCATTTCGGGCTTCGGGCCGGGC
TCGGGCTTGAGAAATGAAGGTCGGGCTTAACAAGCCTGGCTCGAAACCCGCCCCGGCCCA
ACATTTGCCCGGGTTTAGCTAGGCCATAGCAGAATGAATGAGATCTCCAAAACTCAACAA
ATCGTAAACAAATTTAAAGAACTCATAAATGAACCACGGAGATATAAATGGGATAGGTAA
TCACCTTGAACAGTAAAAGCTCTGACAGGATTTAGAGTGGAAAAGGATAGAGCAAACTTA
CAATAGCGTGTGAGGCATATCCTGGAAAGACCCCAGCGTAAGCATCAGCAGGATAAGGAA
TATATGCCTATAACAAAATAAAATAAAAATAGCTGGATAACTGACGGCAGCATATGAGAT
AGAGAACAATTCCCATGATGACATGAACTTACAAATGATTGGCTACAGGCAAGCATTGGA
GGGGGAGCAACAGTATCTGGGTTCCCCAAAGATAACAGTGACTTTATCATGTGCTGATCA
GGCTTCCCATGATCATTGTCATTGTCTGAAACAAAAAGCAGTGTTACTGTTAACATGAAG
ATATGGTCACATCAATTCATCTCACTGTAAATGGGGCTTGGGCGATGTGAACATCATCGG
AGAGAGTCACTAATAAAGCAAACGACCCATCAGAACTTAGTTTACAGAGATAATCTTCTC
TTCATCTTTTGAGAAAAGACAAATTATGAGTTTAAGCATTGGTAAGAAGCATAGTAATAG
GAGTGACGGAAAATTAAAGCTCACAAAATGGATACCTAGATTCAGAAAAGAAAAATGCTA
CTACATCATAAGAGTTGAAACTGCAGCGAAATTCAGATTACTAGTGTGACAATGTGATAA
TACTACCAGATTGTGATGAGGGTCTTGAGACGTGTTGCTCATTTAGACTACTGTCAGTCA
TTGCAGGTGCTTCTTGTTGTGACCGGTCAGACTTGGTTGATGAGGAGTCCTGGTCGTAAT
TCTTATCAACTAATTTCTTCGAATGACAGCCATTCCCTGACAGGAAATCCTACGTGTGCA
GAAGCCAGCATATAAGTTTGTTATTTGTGGCGTAACAAGCCCCAAAACACAAGTTTCACT
ATAAATAGTAACTACTTACATAGTTGGAAATAGGATGGCCAGGATGATCCTCCATTGTAC
GCACAAGTTTTAGCGTTATATGACGGTATCACTTAGCTCCAATCAACATTTCTCTGCAGG
AATTTCTAATTAGCTTAGTTGAAATTGCGCCTTAAACAACCTTCATGATATATTGCCAAC
ATTAAATTAAACATGGTAAAAAGAGAGTTGTCAACGGCAACCCCTATCACCTTGTTTATA
ATCATTAAACAAGAGTTTGATTTATCCATAATCACTTGCAGTTCATTAGGCAATCAATAT
TATAACACACCAGACGAACAGTCACATATATGTATGAACATCTGAAATAGATAAAAAAAA
AATTAGAAAAGGAGGTTCAAACCCCCGGCCTCTGCATCAATCGATGCATACGACCATTTT
TATTAATTATTCAACATAGGTCTAACAAGAACATACATCAAACCATCTGAAGCCACCACT
CACACCTACAAAACTCGATAA